MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-4-gf3598d2f7b6b) initialized Starting run at 05:37:05 UTC on 2023-09-06. Successfully read inputs file ... Castro git describe: 23.09 AMReX git describe: 23.09-4-gf3598d2f7 Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014321685 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.381865482 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.395841022 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328790409 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328587207 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357141172 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33121193 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310289196 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309554874 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31144847 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310740794 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.070406466 seconds Ending run at 05:37:09 UTC on 2023-09-06. Run time = 3.66476076 Run time without initialization = 3.441464944 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.664 ... 3.665 ... 3.665 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3208 2.3573 2.4033 65.58% Gravity::make_radial_gravity() 21 0.3233 0.3301 0.3384 9.23% Castro::estTimeStep() 21 0.03576 0.1009 0.157 4.28% Castro::initData() 1 0.03841 0.08711 0.1522 4.15% check_for_negative_density() 10 0.06263 0.111 0.1428 3.90% amrex::Copy() 193 0.06423 0.07839 0.0894 2.44% FabArray::ParallelCopy_finish() 41 0.03527 0.05146 0.08466 2.31% FabArray::setVal() 143 0.06078 0.06793 0.07842 2.14% Amr::writePlotFile() 2 0.06651 0.06882 0.06934 1.89% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04907 0.05031 1.37% Castro::normalize_species() 62 0.04101 0.04165 0.04316 1.18% FabArray::ParallelCopy_nowait() 41 0.03681 0.04132 0.04257 1.16% StateData::FillBoundary(geom) 41 0.03583 0.03853 0.04198 1.15% FillPatchIterator::Initialize 41 0.02778 0.03218 0.0339 0.93% Gravity::interpolate_monopole_grav() 21 0.02811 0.02843 0.02896 0.79% Castro::construct_new_gravity_source() 10 0.02219 0.02441 0.02707 0.74% Castro::computeTemp() 63 0.01881 0.01983 0.02094 0.57% Castro::initialize_do_advance() 10 0.0122 0.01761 0.02058 0.56% VisMF::Write(FabArray) 2 0.01268 0.01333 0.01567 0.43% FabArray::Saxpy() 20 0.01122 0.0127 0.01363 0.37% Castro::initialize_advance() 10 0.004108 0.01005 0.01334 0.36% FabArray::setDomainBndry() 41 0.00913 0.01172 0.01284 0.35% MultiFab::contains_nan() 20 0.009657 0.01059 0.01112 0.30% Castro::construct_old_gravity_source() 10 0.007521 0.009639 0.01026 0.28% Castro::initMFs() 1 0.006368 0.007519 0.009887 0.27% Castro::enforce_min_density() 62 0.007293 0.007558 0.007984 0.22% StateData::define() 4 0.005229 0.006155 0.007915 0.22% Castro::construct_new_source() 50 0.00586 0.006243 0.006438 0.18% main() 1 0.003685 0.004549 0.004869 0.13% Gravity::get_new_grav_vector() 11 0.002965 0.003733 0.004585 0.13% Castro::swap_state_time_levels() 10 0.003082 0.004103 0.004337 0.12% Amr::coarseTimeStep() 10 0.001177 0.001977 0.002691 0.07% Castro::buildMetrics() 1 0.001484 0.00177 0.002288 0.06% Gravity::get_old_grav_vector() 10 0.001619 0.002079 0.002285 0.06% Castro::finalize_do_advance() 10 0.0005091 0.001013 0.001253 0.03% AmrLevel::FillPatch() 41 0.0006914 0.0008291 0.0009892 0.03% Amr::InitAmr() 1 0.0002687 0.0003663 0.0005009 0.01% Amr::timeStep() 10 0.0001892 0.0002366 0.0003862 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002869 0.0003005 0.0003343 0.01% DistributionMapping::LeastUsedCPUs() 1 7.647e-06 0.0001671 0.0002641 0.01% Castro::do_advance_ctu() 10 0.0001389 0.0001693 0.0001909 0.01% Castro::clean_state() 62 0.0001289 0.0001537 0.0001702 0.00% Castro::enforce_consistent_e() 1 7.77e-05 9.302e-05 0.0001462 0.00% FillPatchIterator::FillFromLevel0() 41 8.83e-05 0.0001149 0.0001427 0.00% Castro::finalize_advance() 10 9.033e-05 0.0001012 0.0001273 0.00% StateDataPhysBCFunct::() 41 8.406e-05 0.0001069 0.0001174 0.00% Castro::do_old_sources() 10 6.465e-05 9.215e-05 0.000104 0.00% Castro::construct_old_source() 50 5.275e-05 7.299e-05 8.984e-05 0.00% FabArray::ParallelCopy() 41 6.304e-05 7.551e-05 8.578e-05 0.00% Castro::do_new_sources() 10 5.118e-05 6.277e-05 7.882e-05 0.00% Castro::Castro() 1 6.032e-05 6.937e-05 7.865e-05 0.00% Amr::FinalizeInit() 1 4.399e-06 1.424e-05 7.775e-05 0.00% FillPatchSingleLevel 41 5.414e-05 6.732e-05 7.328e-05 0.00% Amr::writeSmallPlotFile() 1 2.78e-05 5.433e-05 6.708e-05 0.00% FabArrayBase::getCPC() 41 4.428e-05 5.446e-05 6.688e-05 0.00% Castro::advance() 10 3.565e-05 4.757e-05 6.355e-05 0.00% Castro::construct_old_gravity() 10 4.085e-05 4.928e-05 5.734e-05 0.00% Castro::apply_source_to_state() 20 2.959e-05 4.366e-05 5.534e-05 0.00% Castro::subcycle_advance_ctu() 10 4.336e-05 5.021e-05 5.409e-05 0.00% Castro::construct_new_gravity() 10 3.333e-05 4.101e-05 4.661e-05 0.00% Amr::defBaseLevel() 1 2.569e-05 3.201e-05 4.155e-05 0.00% Castro::expand_state() 10 2.282e-05 2.864e-05 3.945e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.714e-05 2.514e-05 3.399e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.767e-05 3.155e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.546e-05 2.806e-05 0.00% Gravity::swapTimeLevels() 10 1.162e-05 1.537e-05 2.77e-05 0.00% Castro::check_for_nan() 20 1.995e-05 2.223e-05 2.684e-05 0.00% Castro::post_timestep() 10 1.378e-05 1.56e-05 1.871e-05 0.00% Amr::initSubcycle() 1 9.215e-06 1.201e-05 1.782e-05 0.00% Gravity::set_mass_offset() 10 9.857e-06 1.111e-05 1.28e-05 0.00% Castro::computeNewDt() 9 8.692e-06 1.036e-05 1.196e-05 0.00% Castro::post_init() 1 3.075e-06 4.605e-06 1.077e-05 0.00% Castro::create_source_corrector() 10 7.464e-06 8.555e-06 9.558e-06 0.00% Castro::FluxRegCrseInit 10 6.28e-06 7.669e-06 8.685e-06 0.00% Castro::retry_advance_ctu() 10 6.502e-06 7.46e-06 8.25e-06 0.00% Castro::post_regrid() 1 1.818e-06 4.155e-06 6.969e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.24e-06 5.205e-06 6.288e-06 0.00% Castro::computeInitialDt() 2 3.65e-06 4.735e-06 5.296e-06 0.00% Amr::InitializeInit() 1 1.993e-06 2.623e-06 5.283e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.359e-06 3.067e-06 0.00% Amr::init() 1 2.191e-06 2.488e-06 3.007e-06 0.00% Amr::initialInit() 1 1.465e-06 1.733e-06 2.391e-06 0.00% DistributionMapping::Distribute() 1 9.84e-07 1.249e-06 1.458e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.664 3.665 3.665 100.00% Amr::coarseTimeStep() 10 3.366 3.366 3.366 91.85% Amr::timeStep() 10 3.353 3.354 3.355 91.54% Castro::advance() 10 3.337 3.338 3.338 91.09% Castro::subcycle_advance_ctu() 10 3.258 3.264 3.275 89.36% Castro::do_advance_ctu() 10 3.258 3.264 3.275 89.36% Castro::construct_ctu_hydro_source() 10 2.486 2.489 2.493 68.01% Gravity::make_radial_gravity() 21 0.3412 0.3471 0.3544 9.67% Gravity::get_new_grav_vector() 11 0.2224 0.224 0.2256 6.16% AmrLevel::FillPatch() 41 0.1869 0.2065 0.2251 6.14% Amr::init() 1 0.2226 0.2228 0.2229 6.08% Castro::construct_old_gravity() 10 0.2037 0.2071 0.2138 5.83% Gravity::get_old_grav_vector() 10 0.2031 0.2065 0.2132 5.82% Amr::initialInit() 1 0.2082 0.2084 0.2086 5.69% FillPatchIterator::Initialize 41 0.1585 0.1757 0.2008 5.48% Castro::construct_new_gravity() 10 0.1963 0.1975 0.1985 5.42% Castro::initialize_do_advance() 10 0.1593 0.1724 0.1822 4.97% Amr::InitializeInit() 1 0.05885 0.1087 0.1779 4.86% Amr::defBaseLevel() 1 0.05885 0.1087 0.1779 4.86% FillPatchIterator::FillFromLevel0() 41 0.1178 0.1318 0.1639 4.47% FillPatchSingleLevel 41 0.1177 0.1316 0.1638 4.47% Castro::estTimeStep() 21 0.03576 0.1009 0.157 4.28% Castro::initData() 1 0.04194 0.09109 0.1559 4.25% Amr::FinalizeInit() 1 0.03032 0.09972 0.1498 4.09% check_for_negative_density() 10 0.06263 0.111 0.1428 3.90% Castro::expand_state() 10 0.1036 0.1172 0.131 3.58% Castro::computeInitialDt() 2 0.002302 0.0717 0.1217 3.32% FabArray::ParallelCopy() 41 0.0773 0.09294 0.1216 3.32% Castro::clean_state() 62 0.1147 0.1176 0.1212 3.31% Castro::do_old_sources() 10 0.09246 0.09601 0.09934 2.71% amrex::Copy() 193 0.06423 0.07839 0.0894 2.44% Amr::writePlotFile() 2 0.08474 0.08485 0.085 2.32% FabArray::ParallelCopy_finish() 41 0.03527 0.05146 0.08466 2.31% FabArray::setVal() 143 0.06078 0.06793 0.07842 2.14% Castro::initialize_advance() 10 0.05877 0.06998 0.07649 2.09% Castro::do_new_sources() 10 0.05891 0.06478 0.07355 2.01% Castro::computeTemp() 63 0.06688 0.06921 0.07132 1.95% Castro::reset_internal_energy(MultiFab) 63 0.0474 0.04938 0.0506 1.38% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04907 0.05031 1.37% Castro::normalize_species() 62 0.04101 0.04165 0.04316 1.18% FabArray::ParallelCopy_nowait() 41 0.0369 0.0414 0.04264 1.16% StateDataPhysBCFunct::() 41 0.03594 0.03864 0.04209 1.15% StateData::FillBoundary(geom) 41 0.03583 0.03853 0.04198 1.15% Castro::construct_new_source() 50 0.02838 0.03065 0.03345 0.91% Gravity::interpolate_monopole_grav() 21 0.02811 0.02843 0.02896 0.79% Castro::finalize_do_advance() 10 0.01143 0.02117 0.02792 0.76% Castro::post_init() 1 0.02713 0.02761 0.02781 0.76% Castro::construct_new_gravity_source() 10 0.02219 0.02441 0.02707 0.74% Castro::post_timestep() 10 0.01545 0.0159 0.01631 0.44% VisMF::Write(FabArray) 2 0.01268 0.01333 0.01567 0.43% Castro::Castro() 1 0.009699 0.01124 0.01403 0.38% Castro::apply_source_to_state() 20 0.01126 0.01275 0.01368 0.37% FabArray::Saxpy() 20 0.01122 0.0127 0.01363 0.37% FabArray::setDomainBndry() 41 0.00913 0.01172 0.01284 0.35% Castro::check_for_nan() 20 0.009677 0.01061 0.01114 0.30% MultiFab::contains_nan() 20 0.009657 0.01059 0.01112 0.30% Castro::construct_old_source() 50 0.007582 0.009712 0.01035 0.28% Castro::construct_old_gravity_source() 10 0.007521 0.009639 0.01026 0.28% Castro::initMFs() 1 0.006368 0.007519 0.009887 0.27% Castro::computeNewDt() 9 0.009078 0.009086 0.009092 0.25% Castro::enforce_min_density() 62 0.007293 0.007558 0.007984 0.22% AmrLevel::AmrLevel(dm) 1 0.005252 0.00618 0.007949 0.22% StateData::define() 4 0.005229 0.006155 0.007915 0.22% Castro::swap_state_time_levels() 10 0.003082 0.004103 0.004337 0.12% Castro::finalize_advance() 10 0.003001 0.003453 0.003877 0.11% Castro::buildMetrics() 1 0.001606 0.001921 0.002506 0.07% Castro::post_regrid() 1 0.00155 0.001664 0.002146 0.06% Amr::InitAmr() 1 0.0002786 0.0003783 0.000518 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.334e-05 0.0001736 0.0002714 0.01% DistributionMapping::LeastUsedCPUs() 1 7.647e-06 0.0001671 0.0002641 0.01% Castro::enforce_consistent_e() 1 7.77e-05 9.302e-05 0.0001462 0.00% FabArrayBase::getCPC() 41 7.227e-05 7.992e-05 9.353e-05 0.00% Amr::writeSmallPlotFile() 1 2.78e-05 5.433e-05 6.708e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.767e-05 3.155e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.546e-05 2.806e-05 0.00% Gravity::swapTimeLevels() 10 1.162e-05 1.537e-05 2.77e-05 0.00% Amr::initSubcycle() 1 9.215e-06 1.201e-05 1.782e-05 0.00% Gravity::set_mass_offset() 10 9.857e-06 1.111e-05 1.28e-05 0.00% Castro::create_source_corrector() 10 7.464e-06 8.555e-06 9.558e-06 0.00% Castro::FluxRegCrseInit 10 6.28e-06 7.669e-06 8.685e-06 0.00% Castro::retry_advance_ctu() 10 6.502e-06 7.46e-06 8.25e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.359e-06 3.067e-06 0.00% DistributionMapping::Distribute() 1 9.84e-07 1.249e-06 1.458e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 37 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-4-gf3598d2f7b6b) finalized