MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-4-gf3598d2f7b6b) initialized Starting run at 05:21:27 UTC on 2023-09-07. Successfully read inputs file ... Castro git describe: 23.09 AMReX git describe: 23.09-4-gf3598d2f7 Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014895043 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.3685167 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337492734 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341945527 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340942271 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355993218 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34037301 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316531429 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313603474 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313966023 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317485189 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010103768 seconds Ending run at 05:21:31 UTC on 2023-09-07. Run time = 3.564744498 Run time without initialization = 3.362489416 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.563 ... 3.564 ... 3.565 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2848 2.3481 2.3854 66.91% Gravity::make_radial_gravity() 21 0.327 0.3329 0.3436 9.64% check_for_negative_density() 10 0.03241 0.07362 0.1409 3.95% Castro::initData() 1 0.04599 0.08636 0.1347 3.78% Castro::estTimeStep() 21 0.02652 0.08445 0.1331 3.73% amrex::Copy() 193 0.06566 0.0783 0.08776 2.46% FabArray::setVal() 143 0.06264 0.07253 0.0854 2.40% FabArray::ParallelCopy_finish() 41 0.03445 0.05847 0.08233 2.31% Castro::reset_internal_energy(Fab) 1008 0.04715 0.04909 0.0508 1.42% Castro::normalize_species() 62 0.0424 0.04359 0.04577 1.28% FabArray::ParallelCopy_nowait() 41 0.03497 0.04046 0.04206 1.18% StateData::FillBoundary(geom) 41 0.03575 0.03819 0.04195 1.18% FillPatchIterator::Initialize 41 0.02793 0.03293 0.03711 1.04% Gravity::interpolate_monopole_grav() 21 0.02849 0.02961 0.03136 0.88% Castro::construct_new_gravity_source() 10 0.02212 0.02516 0.02953 0.83% Castro::initialize_do_advance() 10 0.01202 0.01813 0.02127 0.60% Castro::computeTemp() 63 0.0178 0.01938 0.02075 0.58% VisMF::Write(FabArray) 2 0.01308 0.0138 0.01643 0.46% FabArray::Saxpy() 20 0.01075 0.01306 0.01414 0.40% Castro::initialize_advance() 10 0.008393 0.01127 0.01411 0.40% FabArray::setDomainBndry() 41 0.008942 0.01173 0.01277 0.36% MultiFab::contains_nan() 20 0.009892 0.01104 0.01228 0.34% Castro::construct_old_gravity_source() 10 0.007123 0.009672 0.01042 0.29% Amr::writePlotFile() 2 0.005996 0.009183 0.01017 0.29% Castro::initMFs() 1 0.006262 0.007452 0.01001 0.28% StateData::define() 4 0.005181 0.006063 0.008077 0.23% Castro::enforce_min_density() 62 0.007395 0.007578 0.007745 0.22% Amr::coarseTimeStep() 10 0.00342 0.005306 0.006606 0.19% Castro::construct_new_source() 50 0.005646 0.006207 0.006556 0.18% main() 1 0.003402 0.004261 0.004895 0.14% Castro::swap_state_time_levels() 10 0.003112 0.004106 0.004372 0.12% Gravity::get_new_grav_vector() 11 0.002661 0.003498 0.003868 0.11% Gravity::get_old_grav_vector() 10 0.001514 0.002068 0.002481 0.07% Castro::buildMetrics() 1 0.001449 0.001742 0.002311 0.06% Castro::finalize_do_advance() 10 0.0004425 0.001077 0.001351 0.04% AmrLevel::FillPatch() 41 0.0006899 0.0008055 0.0009244 0.03% Amr::InitAmr() 1 0.0002692 0.0003545 0.0006298 0.02% Amr::timeStep() 10 0.0001594 0.0002282 0.0004401 0.01% DistributionMapping::LeastUsedCPUs() 1 7.695e-06 0.0003207 0.0004072 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00029 0.0003136 0.0003637 0.01% Castro::do_advance_ctu() 10 0.0001369 0.0001716 0.0002322 0.01% Castro::clean_state() 62 0.0001444 0.0001506 0.0001616 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.000116 0.0001314 0.00% Castro::finalize_advance() 10 8.501e-05 0.000102 0.0001235 0.00% StateDataPhysBCFunct::() 41 8.673e-05 0.0001028 0.0001191 0.00% Castro::do_old_sources() 10 7.254e-05 8.944e-05 0.0001073 0.00% Castro::enforce_consistent_e() 1 8.117e-05 9.121e-05 0.0001018 0.00% Castro::Castro() 1 6.162e-05 7.134e-05 9.087e-05 0.00% Amr::FinalizeInit() 1 4.703e-06 1.669e-05 8.517e-05 0.00% Castro::construct_old_source() 50 5.196e-05 6.893e-05 8.136e-05 0.00% FabArray::ParallelCopy() 41 6.629e-05 7.087e-05 7.792e-05 0.00% Castro::do_new_sources() 10 5.064e-05 6.351e-05 7.126e-05 0.00% Castro::construct_new_gravity() 10 3.517e-05 4.305e-05 7.094e-05 0.00% FillPatchSingleLevel 41 6.087e-05 6.574e-05 7.087e-05 0.00% FabArrayBase::getCPC() 41 4.718e-05 5.337e-05 6.329e-05 0.00% Castro::subcycle_advance_ctu() 10 3.646e-05 4.752e-05 6.295e-05 0.00% Amr::writeSmallPlotFile() 1 2.885e-05 4.81e-05 6.178e-05 0.00% Castro::advance() 10 3.915e-05 4.552e-05 5.378e-05 0.00% Castro::construct_old_gravity() 10 4.298e-05 4.634e-05 5.169e-05 0.00% Castro::apply_source_to_state() 20 3.64e-05 4.138e-05 4.782e-05 0.00% Amr::defBaseLevel() 1 2.401e-05 3.031e-05 3.508e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.839e-05 3.311e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.864e-05 2.33e-05 3.061e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.532e-05 2.964e-05 0.00% Castro::expand_state() 10 2.033e-05 2.455e-05 2.933e-05 0.00% Castro::check_for_nan() 20 1.912e-05 2.091e-05 2.368e-05 0.00% Amr::initSubcycle() 1 8.966e-06 1.189e-05 1.813e-05 0.00% Castro::post_timestep() 10 1.276e-05 1.578e-05 1.807e-05 0.00% Gravity::swapTimeLevels() 10 1.012e-05 1.396e-05 1.807e-05 0.00% Castro::create_source_corrector() 10 6.507e-06 9.651e-06 1.552e-05 0.00% Gravity::set_mass_offset() 10 9.247e-06 1.106e-05 1.474e-05 0.00% Castro::computeNewDt() 9 8.892e-06 1.136e-05 1.361e-05 0.00% Castro::post_init() 1 2.962e-06 4.67e-06 9.481e-06 0.00% Castro::retry_advance_ctu() 10 6.665e-06 7.594e-06 9.119e-06 0.00% Castro::FluxRegCrseInit 10 6.749e-06 7.875e-06 8.463e-06 0.00% Amr::init() 1 1.884e-06 2.904e-06 6.97e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.77e-06 5.094e-06 6.494e-06 0.00% Amr::InitializeInit() 1 1.965e-06 2.68e-06 6.233e-06 0.00% Castro::computeInitialDt() 2 3.768e-06 4.806e-06 5.566e-06 0.00% Castro::post_regrid() 1 2.056e-06 3.7e-06 4.951e-06 0.00% Castro::FluxRegFineAdd() 10 1.941e-06 2.181e-06 2.541e-06 0.00% Amr::initialInit() 1 1.246e-06 1.628e-06 2.029e-06 0.00% DistributionMapping::Distribute() 1 9.69e-07 1.257e-06 1.467e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.563 3.564 3.565 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 93.91% Amr::timeStep() 10 3.329 3.33 3.332 93.47% Castro::advance() 10 3.313 3.313 3.314 92.97% Castro::subcycle_advance_ctu() 10 3.225 3.234 3.241 90.93% Castro::do_advance_ctu() 10 3.225 3.234 3.241 90.93% Castro::construct_ctu_hydro_source() 10 2.439 2.443 2.449 68.70% Gravity::make_radial_gravity() 21 0.3423 0.3499 0.358 10.04% Gravity::get_new_grav_vector() 11 0.2358 0.2383 0.2396 6.72% AmrLevel::FillPatch() 41 0.1956 0.2129 0.2261 6.34% Castro::construct_new_gravity() 10 0.2082 0.2108 0.2121 5.95% Castro::construct_old_gravity() 10 0.1958 0.2013 0.2091 5.86% Gravity::get_old_grav_vector() 10 0.1951 0.2005 0.2085 5.85% Amr::init() 1 0.2014 0.2017 0.2018 5.66% FillPatchIterator::Initialize 41 0.1635 0.1822 0.1937 5.43% Amr::initialInit() 1 0.1859 0.1862 0.1867 5.24% Castro::initialize_do_advance() 10 0.1667 0.175 0.1857 5.21% FillPatchIterator::FillFromLevel0() 41 0.1162 0.1376 0.155 4.35% FillPatchSingleLevel 41 0.116 0.1374 0.1549 4.35% Amr::InitializeInit() 1 0.06716 0.1079 0.1549 4.34% Amr::defBaseLevel() 1 0.06716 0.1079 0.1549 4.34% check_for_negative_density() 10 0.03241 0.07362 0.1409 3.95% Castro::initData() 1 0.04977 0.09032 0.1388 3.89% Castro::estTimeStep() 21 0.02652 0.08445 0.1331 3.73% Castro::expand_state() 10 0.1091 0.1194 0.1288 3.61% Castro::clean_state() 62 0.1144 0.1191 0.1231 3.45% Amr::FinalizeInit() 1 0.03143 0.07832 0.1189 3.33% FabArray::ParallelCopy() 41 0.07654 0.09908 0.1175 3.30% Castro::do_old_sources() 10 0.09252 0.09589 0.09873 2.77% Castro::computeInitialDt() 2 0.002349 0.04952 0.09034 2.53% amrex::Copy() 193 0.06566 0.0783 0.08776 2.46% FabArray::setVal() 143 0.06264 0.07253 0.0854 2.40% Castro::initialize_advance() 10 0.06843 0.07573 0.08471 2.38% FabArray::ParallelCopy_finish() 41 0.03445 0.05847 0.08233 2.31% Castro::do_new_sources() 10 0.05894 0.06696 0.07845 2.20% Castro::computeTemp() 63 0.06535 0.06879 0.07176 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04745 0.0494 0.0511 1.43% Castro::reset_internal_energy(Fab) 1008 0.04715 0.04909 0.0508 1.42% Castro::normalize_species() 62 0.0424 0.04359 0.04577 1.28% FabArray::ParallelCopy_nowait() 41 0.03506 0.04054 0.04213 1.18% StateDataPhysBCFunct::() 41 0.03583 0.0383 0.04206 1.18% StateData::FillBoundary(geom) 41 0.03575 0.03819 0.04195 1.18% Castro::construct_new_source() 50 0.02844 0.03136 0.03589 1.01% Castro::finalize_do_advance() 10 0.01287 0.02519 0.0341 0.96% Gravity::interpolate_monopole_grav() 21 0.02849 0.02961 0.03136 0.88% Castro::construct_new_gravity_source() 10 0.02212 0.02516 0.02953 0.83% Castro::post_init() 1 0.02794 0.02846 0.02893 0.81% Amr::writePlotFile() 2 0.02522 0.0257 0.02612 0.73% Castro::post_timestep() 10 0.0157 0.01651 0.01797 0.50% VisMF::Write(FabArray) 2 0.01308 0.0138 0.01643 0.46% Castro::apply_source_to_state() 20 0.01079 0.0131 0.01418 0.40% FabArray::Saxpy() 20 0.01075 0.01306 0.01414 0.40% Castro::Castro() 1 0.009783 0.01113 0.01413 0.40% FabArray::setDomainBndry() 41 0.008942 0.01173 0.01277 0.36% Castro::check_for_nan() 20 0.009912 0.01106 0.01231 0.35% MultiFab::contains_nan() 20 0.009892 0.01104 0.01228 0.34% Castro::computeNewDt() 9 0.01081 0.01082 0.01082 0.30% Castro::construct_old_source() 50 0.007174 0.009741 0.0105 0.29% Castro::construct_old_gravity_source() 10 0.007123 0.009672 0.01042 0.29% Castro::initMFs() 1 0.006262 0.007452 0.01001 0.28% AmrLevel::AmrLevel(dm) 1 0.005203 0.006086 0.008103 0.23% StateData::define() 4 0.005181 0.006063 0.008077 0.23% Castro::enforce_min_density() 62 0.007395 0.007578 0.007745 0.22% Castro::finalize_advance() 10 0.002995 0.003724 0.004468 0.13% Castro::swap_state_time_levels() 10 0.003112 0.004106 0.004372 0.12% Castro::buildMetrics() 1 0.001567 0.001885 0.002523 0.07% Castro::post_regrid() 1 0.001546 0.001641 0.001898 0.05% Amr::InitAmr() 1 0.0002789 0.0003664 0.0006479 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.283e-05 0.000327 0.0004145 0.01% DistributionMapping::LeastUsedCPUs() 1 7.695e-06 0.0003207 0.0004072 0.01% Castro::enforce_consistent_e() 1 8.117e-05 9.121e-05 0.0001018 0.00% FabArrayBase::getCPC() 41 6.976e-05 7.868e-05 9.192e-05 0.00% Amr::writeSmallPlotFile() 1 2.885e-05 4.81e-05 6.178e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.839e-05 3.311e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.532e-05 2.964e-05 0.00% Amr::initSubcycle() 1 8.966e-06 1.189e-05 1.813e-05 0.00% Gravity::swapTimeLevels() 10 1.012e-05 1.396e-05 1.807e-05 0.00% Castro::create_source_corrector() 10 6.507e-06 9.651e-06 1.552e-05 0.00% Gravity::set_mass_offset() 10 9.247e-06 1.106e-05 1.474e-05 0.00% Castro::retry_advance_ctu() 10 6.665e-06 7.594e-06 9.119e-06 0.00% Castro::FluxRegCrseInit 10 6.749e-06 7.875e-06 8.463e-06 0.00% Castro::FluxRegFineAdd() 10 1.941e-06 2.181e-06 2.541e-06 0.00% DistributionMapping::Distribute() 1 9.69e-07 1.257e-06 1.467e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-4-gf3598d2f7b6b) finalized