MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-5-gb98bdae9fb67) initialized Starting run at 12:31:48 UTC on 2023-09-08. Successfully read inputs file ... Castro git describe: 23.09-1-g20d0bd6fa AMReX git describe: 23.09-5-gb98bdae9f Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014292264 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366699467 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340895733 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333401728 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.364232244 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36844781 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330861338 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312871222 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310820419 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314069707 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312161966 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009462147 seconds Ending run at 12:31:52 UTC on 2023-09-08. Run time = 3.571959683 Run time without initialization = 3.369048395 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.571 ... 3.572 ... 3.572 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2998 2.3547 2.4376 68.24% Gravity::make_radial_gravity() 21 0.3272 0.3383 0.3507 9.82% check_for_negative_density() 10 0.01391 0.1011 0.1588 4.45% Castro::estTimeStep() 21 0.03786 0.07949 0.1406 3.94% Castro::initData() 1 0.03831 0.08908 0.1358 3.80% FabArray::ParallelCopy_finish() 41 0.0334 0.0509 0.08794 2.46% amrex::Copy() 193 0.06448 0.07606 0.08329 2.33% FabArray::setVal() 143 0.05811 0.06711 0.07829 2.19% Castro::reset_internal_energy(Fab) 1008 0.04698 0.04918 0.05151 1.44% Castro::normalize_species() 62 0.04082 0.0422 0.04349 1.22% StateData::FillBoundary(geom) 41 0.03544 0.0382 0.04241 1.19% FabArray::ParallelCopy_nowait() 41 0.0338 0.04013 0.04208 1.18% FillPatchIterator::Initialize 41 0.02694 0.03134 0.03367 0.94% Gravity::interpolate_monopole_grav() 21 0.02838 0.02865 0.02921 0.82% Castro::construct_new_gravity_source() 10 0.02216 0.02417 0.0273 0.76% Castro::computeTemp() 63 0.01857 0.01972 0.02117 0.59% Castro::initialize_do_advance() 10 0.01138 0.0165 0.01947 0.55% VisMF::Write(FabArray) 2 0.01239 0.01302 0.01525 0.43% Castro::initialize_advance() 10 0.004109 0.009991 0.01368 0.38% FabArray::Saxpy() 20 0.0106 0.01247 0.0132 0.37% FabArray::setDomainBndry() 41 0.008461 0.01106 0.01234 0.35% MultiFab::contains_nan() 20 0.009567 0.01038 0.01132 0.32% Castro::construct_old_gravity_source() 10 0.007059 0.009345 0.00984 0.28% Castro::initMFs() 1 0.006286 0.007633 0.009625 0.27% Amr::writePlotFile() 2 0.005954 0.008397 0.009127 0.26% Castro::enforce_min_density() 62 0.007261 0.007568 0.007953 0.22% StateData::define() 4 0.005114 0.00623 0.007878 0.22% Castro::construct_new_source() 50 0.005717 0.00619 0.006362 0.18% Gravity::get_new_grav_vector() 11 0.002926 0.003591 0.005355 0.15% main() 1 0.003221 0.003909 0.004469 0.13% Castro::swap_state_time_levels() 10 0.003101 0.004026 0.00437 0.12% Amr::coarseTimeStep() 10 0.001432 0.002347 0.003225 0.09% Gravity::get_old_grav_vector() 10 0.001548 0.001934 0.002446 0.07% Castro::buildMetrics() 1 0.001478 0.001823 0.002312 0.06% Castro::finalize_do_advance() 10 0.0004161 0.001023 0.001234 0.03% AmrLevel::FillPatch() 41 0.0006305 0.0007608 0.0008925 0.02% Amr::InitAmr() 1 0.0002842 0.0003725 0.0006734 0.02% DistributionMapping::LeastUsedCPUs() 1 1.054e-05 0.0003455 0.0004473 0.01% Amr::timeStep() 10 0.0001695 0.0002303 0.0003722 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002816 0.0003102 0.0003317 0.01% Castro::do_advance_ctu() 10 0.0001549 0.0001646 0.0001758 0.00% Castro::clean_state() 62 0.0001375 0.0001531 0.0001679 0.00% Castro::enforce_consistent_e() 1 7.774e-05 9.308e-05 0.0001341 0.00% FillPatchIterator::FillFromLevel0() 41 9.804e-05 0.0001163 0.0001276 0.00% Castro::finalize_advance() 10 8.18e-05 9.748e-05 0.0001259 0.00% StateDataPhysBCFunct::() 41 8.204e-05 9.891e-05 0.0001066 0.00% Castro::do_old_sources() 10 7.161e-05 8.904e-05 0.0001025 0.00% Castro::construct_old_source() 50 4.788e-05 6.986e-05 8.214e-05 0.00% FabArray::ParallelCopy() 41 6.595e-05 7.335e-05 8.135e-05 0.00% Castro::Castro() 1 6.362e-05 7.008e-05 7.971e-05 0.00% Castro::do_new_sources() 10 5.341e-05 6.311e-05 7.741e-05 0.00% Amr::FinalizeInit() 1 4.183e-06 1.344e-05 7.091e-05 0.00% FillPatchSingleLevel 41 5.995e-05 6.477e-05 7.005e-05 0.00% Castro::advance() 10 4.063e-05 4.797e-05 6.619e-05 0.00% Amr::writeSmallPlotFile() 1 2.721e-05 4.795e-05 6.497e-05 0.00% Castro::subcycle_advance_ctu() 10 4.064e-05 5.004e-05 6.313e-05 0.00% FabArrayBase::getCPC() 41 4.549e-05 5.357e-05 5.921e-05 0.00% Castro::construct_old_gravity() 10 4.19e-05 4.946e-05 5.91e-05 0.00% Castro::apply_source_to_state() 20 4.03e-05 4.453e-05 4.984e-05 0.00% Castro::construct_new_gravity() 10 3.416e-05 3.977e-05 4.79e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.62e-05 2.973e-05 3.828e-05 0.00% Castro::enforce_speed_limit() 62 2.486e-05 2.838e-05 3.616e-05 0.00% Amr::defBaseLevel() 1 2.778e-05 3.148e-05 3.602e-05 0.00% Castro::check_for_nan() 20 1.931e-05 2.211e-05 3.343e-05 0.00% FabArrayBase::CPC::define() 2 2.142e-05 2.525e-05 3.081e-05 0.00% Castro::computeNewDt() 9 8.729e-06 1.396e-05 3.033e-05 0.00% Castro::expand_state() 10 1.892e-05 2.497e-05 2.89e-05 0.00% Castro::post_timestep() 10 1.284e-05 1.67e-05 2.129e-05 0.00% Amr::initSubcycle() 1 9.87e-06 1.258e-05 1.874e-05 0.00% Gravity::swapTimeLevels() 10 8.928e-06 1.27e-05 1.521e-05 0.00% Gravity::set_mass_offset() 10 7.632e-06 1.081e-05 1.296e-05 0.00% Castro::create_source_corrector() 10 8.313e-06 9.295e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.719e-06 8.118e-06 9.397e-06 0.00% Castro::retry_advance_ctu() 10 6.559e-06 7.452e-06 9.085e-06 0.00% Castro::post_regrid() 1 2.119e-06 3.512e-06 7.628e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.962e-06 4.818e-06 7.415e-06 0.00% Amr::InitializeInit() 1 1.957e-06 2.86e-06 6.434e-06 0.00% Castro::computeInitialDt() 2 3.978e-06 4.533e-06 5.131e-06 0.00% Castro::post_init() 1 3.037e-06 3.79e-06 4.653e-06 0.00% Amr::init() 1 1.836e-06 2.363e-06 3.204e-06 0.00% Castro::FluxRegFineAdd() 10 1.958e-06 2.241e-06 2.533e-06 0.00% Amr::initialInit() 1 1.203e-06 1.511e-06 2.06e-06 0.00% DistributionMapping::Distribute() 1 1.041e-06 1.229e-06 1.58e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.571 3.571 3.572 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 93.93% Amr::timeStep() 10 3.341 3.342 3.343 93.59% Castro::advance() 10 3.325 3.326 3.326 93.12% Castro::subcycle_advance_ctu() 10 3.244 3.253 3.266 91.42% Castro::do_advance_ctu() 10 3.244 3.253 3.265 91.42% Castro::construct_ctu_hydro_source() 10 2.474 2.477 2.481 69.47% Gravity::make_radial_gravity() 21 0.3429 0.3545 0.3644 10.20% Gravity::get_new_grav_vector() 11 0.2279 0.2302 0.2318 6.49% AmrLevel::FillPatch() 41 0.1871 0.2019 0.2179 6.10% Castro::construct_old_gravity() 10 0.201 0.2072 0.2154 6.03% Gravity::get_old_grav_vector() 10 0.2004 0.2066 0.2148 6.01% Castro::construct_new_gravity() 10 0.2023 0.204 0.205 5.74% Amr::init() 1 0.202 0.2024 0.2025 5.67% FillPatchIterator::Initialize 41 0.1598 0.172 0.1936 5.42% Amr::initialInit() 1 0.1876 0.1878 0.188 5.26% Castro::initialize_do_advance() 10 0.1663 0.1698 0.1743 4.88% check_for_negative_density() 10 0.01391 0.1011 0.1588 4.45% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1297 0.1582 4.43% FillPatchSingleLevel 41 0.1182 0.1295 0.1581 4.43% Amr::InitializeInit() 1 0.05639 0.1113 0.1577 4.41% Amr::defBaseLevel() 1 0.05639 0.1113 0.1577 4.41% Castro::estTimeStep() 21 0.03786 0.07949 0.1406 3.94% Castro::initData() 1 0.04175 0.09311 0.1402 3.93% Amr::FinalizeInit() 1 0.03016 0.07653 0.1315 3.68% Castro::expand_state() 10 0.1084 0.1162 0.127 3.56% Castro::clean_state() 62 0.1141 0.1181 0.1231 3.45% FabArray::ParallelCopy() 41 0.07563 0.09118 0.1219 3.41% Castro::computeInitialDt() 2 0.002772 0.0491 0.1041 2.91% Castro::do_old_sources() 10 0.08713 0.09216 0.0958 2.68% FabArray::ParallelCopy_finish() 41 0.0334 0.0509 0.08794 2.46% amrex::Copy() 193 0.06448 0.07606 0.08329 2.33% FabArray::setVal() 143 0.05811 0.06711 0.07829 2.19% Castro::initialize_advance() 10 0.05609 0.06928 0.07822 2.19% Castro::do_new_sources() 10 0.05914 0.06501 0.07389 2.07% Castro::computeTemp() 63 0.06638 0.06922 0.07301 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04727 0.04949 0.05184 1.45% Castro::reset_internal_energy(Fab) 1008 0.04698 0.04918 0.05151 1.44% Castro::normalize_species() 62 0.04082 0.0422 0.04349 1.22% StateDataPhysBCFunct::() 41 0.03554 0.03829 0.04252 1.19% StateData::FillBoundary(geom) 41 0.03544 0.0382 0.04241 1.19% FabArray::ParallelCopy_nowait() 41 0.03388 0.04021 0.04215 1.18% Castro::construct_new_source() 50 0.02836 0.03036 0.03362 0.94% Gravity::interpolate_monopole_grav() 21 0.02838 0.02865 0.02921 0.82% Castro::finalize_do_advance() 10 0.01251 0.02212 0.02845 0.80% Castro::post_init() 1 0.027 0.02725 0.02741 0.77% Castro::construct_new_gravity_source() 10 0.02216 0.02417 0.0273 0.76% Amr::writePlotFile() 2 0.02396 0.02411 0.02431 0.68% Castro::post_timestep() 10 0.01554 0.01611 0.01673 0.47% VisMF::Write(FabArray) 2 0.01239 0.01302 0.01525 0.43% Castro::Castro() 1 0.00901 0.0115 0.01378 0.39% Castro::apply_source_to_state() 20 0.01064 0.01251 0.01324 0.37% FabArray::Saxpy() 20 0.0106 0.01247 0.0132 0.37% FabArray::setDomainBndry() 41 0.008461 0.01106 0.01234 0.35% Castro::check_for_nan() 20 0.009587 0.0104 0.01136 0.32% MultiFab::contains_nan() 20 0.009567 0.01038 0.01132 0.32% Castro::construct_old_source() 50 0.007107 0.009415 0.009922 0.28% Castro::construct_old_gravity_source() 10 0.007059 0.009345 0.00984 0.28% Castro::initMFs() 1 0.006286 0.007633 0.009625 0.27% Castro::computeNewDt() 9 0.009279 0.009309 0.009324 0.26% Castro::enforce_min_density() 62 0.007261 0.007568 0.007953 0.22% AmrLevel::AmrLevel(dm) 1 0.005143 0.00626 0.007916 0.22% StateData::define() 4 0.005114 0.00623 0.007878 0.22% Castro::swap_state_time_levels() 10 0.003101 0.004026 0.00437 0.12% Castro::finalize_advance() 10 0.00299 0.003436 0.003904 0.11% Castro::buildMetrics() 1 0.001596 0.001978 0.002536 0.07% Castro::post_regrid() 1 0.001524 0.001689 0.002026 0.06% Amr::InitAmr() 1 0.0002941 0.0003851 0.0006917 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.648e-05 0.0003516 0.000456 0.01% DistributionMapping::LeastUsedCPUs() 1 1.054e-05 0.0003455 0.0004473 0.01% Castro::enforce_consistent_e() 1 7.774e-05 9.308e-05 0.0001341 0.00% FabArrayBase::getCPC() 41 6.773e-05 7.882e-05 8.646e-05 0.00% Amr::writeSmallPlotFile() 1 2.721e-05 4.795e-05 6.497e-05 0.00% Castro::enforce_speed_limit() 62 2.486e-05 2.838e-05 3.616e-05 0.00% FabArrayBase::CPC::define() 2 2.142e-05 2.525e-05 3.081e-05 0.00% Amr::initSubcycle() 1 9.87e-06 1.258e-05 1.874e-05 0.00% Gravity::swapTimeLevels() 10 8.928e-06 1.27e-05 1.521e-05 0.00% Gravity::set_mass_offset() 10 7.632e-06 1.081e-05 1.296e-05 0.00% Castro::create_source_corrector() 10 8.313e-06 9.295e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.719e-06 8.118e-06 9.397e-06 0.00% Castro::retry_advance_ctu() 10 6.559e-06 7.452e-06 9.085e-06 0.00% Castro::FluxRegFineAdd() 10 1.958e-06 2.241e-06 2.533e-06 0.00% DistributionMapping::Distribute() 1 1.041e-06 1.229e-06 1.58e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-5-gb98bdae9fb67) finalized