MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-5-gb98bdae9fb67) initialized Starting run at 05:21:00 UTC on 2023-09-08. Successfully read inputs file ... Castro git describe: 23.09 AMReX git describe: 23.09-5-gb98bdae9f Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013588189 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.3545862 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336542376 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344061136 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330271239 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329806826 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350409789 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319958108 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314132182 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314881706 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314023641 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009527948 seconds Ending run at 05:21:03 UTC on 2023-09-08. Run time = 3.515755287 Run time without initialization = 3.323207481 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.515 ... 3.515 ... 3.516 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2481 2.3339 2.3951 68.12% Gravity::make_radial_gravity() 21 0.3097 0.3185 0.3349 9.53% check_for_negative_density() 10 0.02678 0.09127 0.1807 5.14% Castro::initData() 1 0.04136 0.08237 0.1299 3.69% Castro::estTimeStep() 21 0.0276 0.07485 0.1142 3.25% FabArray::ParallelCopy_finish() 41 0.03502 0.0578 0.1078 3.07% amrex::Copy() 193 0.06263 0.08035 0.09561 2.72% FabArray::setVal() 143 0.05392 0.06835 0.07504 2.13% Castro::reset_internal_energy(Fab) 1008 0.0474 0.04844 0.0496 1.41% Castro::normalize_species() 62 0.04067 0.04139 0.04207 1.20% FabArray::ParallelCopy_nowait() 41 0.0329 0.03926 0.04124 1.17% StateData::FillBoundary(geom) 41 0.03457 0.03747 0.04095 1.16% FillPatchIterator::Initialize 41 0.02579 0.03105 0.03415 0.97% Gravity::interpolate_monopole_grav() 21 0.02768 0.02864 0.03029 0.86% Castro::construct_new_gravity_source() 10 0.02084 0.02333 0.02482 0.71% Castro::computeTemp() 63 0.01921 0.01962 0.02003 0.57% Castro::initialize_do_advance() 10 0.01082 0.01635 0.0177 0.50% VisMF::Write(FabArray) 2 0.01129 0.01223 0.01453 0.41% Castro::initialize_advance() 10 0.003847 0.01076 0.01384 0.39% FabArray::Saxpy() 20 0.0104 0.01278 0.0136 0.39% FabArray::setDomainBndry() 41 0.008443 0.01116 0.01319 0.38% MultiFab::contains_nan() 20 0.009576 0.01061 0.01165 0.33% Amr::writePlotFile() 2 0.006098 0.008337 0.01035 0.29% Castro::construct_old_gravity_source() 10 0.006266 0.009418 0.0103 0.29% Castro::enforce_min_density() 62 0.007324 0.007614 0.00799 0.23% Castro::initMFs() 1 0.006182 0.006624 0.007314 0.21% Castro::construct_new_source() 50 0.005713 0.0065 0.006752 0.19% StateData::define() 4 0.005052 0.005319 0.005673 0.16% Castro::swap_state_time_levels() 10 0.002984 0.003962 0.004297 0.12% main() 1 0.003054 0.003821 0.004199 0.12% Gravity::get_new_grav_vector() 11 0.002809 0.003499 0.003893 0.11% Gravity::get_old_grav_vector() 10 0.001511 0.002015 0.002475 0.07% Amr::coarseTimeStep() 10 0.001178 0.001769 0.002439 0.07% Castro::buildMetrics() 1 0.001472 0.001565 0.001682 0.05% Castro::finalize_do_advance() 10 0.0004172 0.0009604 0.001213 0.03% AmrLevel::FillPatch() 41 0.0007194 0.0007897 0.0009284 0.03% Amr::timeStep() 10 0.0001856 0.0002549 0.0004901 0.01% Amr::InitAmr() 1 0.0002759 0.0002948 0.0003825 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002837 0.0003008 0.0003303 0.01% Castro::do_advance_ctu() 10 0.0001293 0.0001757 0.0002018 0.01% Castro::clean_state() 62 0.00014 0.0001556 0.0001741 0.00% FillPatchIterator::FillFromLevel0() 41 9.797e-05 0.0001185 0.0001454 0.00% StateDataPhysBCFunct::() 41 8.54e-05 0.0001004 0.0001293 0.00% Castro::finalize_advance() 10 8.194e-05 0.0001077 0.0001255 0.00% Castro::Castro() 1 6.004e-05 7.748e-05 0.0001088 0.00% Castro::enforce_consistent_e() 1 7.76e-05 8.796e-05 0.0001046 0.00% DistributionMapping::LeastUsedCPUs() 1 5.582e-06 8.804e-05 0.0001044 0.00% Castro::do_old_sources() 10 6.614e-05 9.436e-05 0.0001038 0.00% Amr::FinalizeInit() 1 4.336e-06 1.686e-05 9.669e-05 0.00% FabArrayBase::getCPC() 41 4.193e-05 5.725e-05 9.419e-05 0.00% Castro::construct_old_source() 50 5.339e-05 7.167e-05 8.858e-05 0.00% FabArray::ParallelCopy() 41 6.6e-05 7.155e-05 7.89e-05 0.00% Castro::do_new_sources() 10 5.593e-05 6.723e-05 7.489e-05 0.00% Castro::construct_old_gravity() 10 4.336e-05 5.268e-05 6.977e-05 0.00% FillPatchSingleLevel 41 5.86e-05 6.464e-05 6.774e-05 0.00% Amr::writeSmallPlotFile() 1 3.098e-05 4.731e-05 6.492e-05 0.00% Castro::subcycle_advance_ctu() 10 3.982e-05 5.605e-05 6.478e-05 0.00% Castro::apply_source_to_state() 20 3.547e-05 5.227e-05 6.263e-05 0.00% Castro::advance() 10 4.302e-05 4.915e-05 5.33e-05 0.00% Castro::construct_new_gravity() 10 3.382e-05 4.053e-05 4.487e-05 0.00% Amr::defBaseLevel() 1 2.324e-05 2.8e-05 3.883e-05 0.00% Castro::enforce_speed_limit() 62 2.247e-05 2.768e-05 3.496e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.083e-05 2.607e-05 3.145e-05 0.00% Castro::expand_state() 10 2.142e-05 2.395e-05 2.771e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.509e-05 2.761e-05 0.00% Castro::computeNewDt() 9 8.959e-06 1.245e-05 2.225e-05 0.00% Castro::check_for_nan() 20 1.912e-05 2.025e-05 2.171e-05 0.00% Castro::retry_advance_ctu() 10 6.941e-06 9.049e-06 1.914e-05 0.00% Castro::post_timestep() 10 1.377e-05 1.612e-05 1.859e-05 0.00% Gravity::swapTimeLevels() 10 1.366e-05 1.52e-05 1.851e-05 0.00% Gravity::set_mass_offset() 10 8.667e-06 1.126e-05 1.321e-05 0.00% Castro::create_source_corrector() 10 6.45e-06 9.452e-06 1.314e-05 0.00% Castro::FluxRegCrseInit 10 6.625e-06 8.054e-06 1.129e-05 0.00% Amr::initSubcycle() 1 9.138e-06 9.838e-06 1.058e-05 0.00% Castro::post_init() 1 2.643e-06 4.999e-06 9.393e-06 0.00% Castro::post_regrid() 1 1.487e-06 3.55e-06 7.727e-06 0.00% Amr::init() 1 1.865e-06 3.044e-06 7.464e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.561e-06 5.228e-06 7.174e-06 0.00% Castro::computeInitialDt() 2 3.579e-06 4.268e-06 5.686e-06 0.00% Amr::InitializeInit() 1 1.739e-06 2.364e-06 4.724e-06 0.00% Castro::FluxRegFineAdd() 10 2.052e-06 2.37e-06 2.852e-06 0.00% Amr::initialInit() 1 1.108e-06 1.56e-06 2.077e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.122e-06 1.388e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.515 3.515 3.516 100.00% Amr::coarseTimeStep() 10 3.31 3.31 3.31 94.13% Amr::timeStep() 10 3.297 3.297 3.298 93.80% Castro::advance() 10 3.281 3.281 3.281 93.33% Castro::subcycle_advance_ctu() 10 3.204 3.208 3.227 91.77% Castro::do_advance_ctu() 10 3.204 3.208 3.226 91.77% Castro::construct_ctu_hydro_source() 10 2.441 2.446 2.45 69.68% Gravity::make_radial_gravity() 21 0.3261 0.3352 0.3484 9.91% AmrLevel::FillPatch() 41 0.1857 0.2076 0.2336 6.64% Gravity::get_new_grav_vector() 11 0.2174 0.2189 0.22 6.26% Castro::construct_old_gravity() 10 0.1945 0.2032 0.214 6.09% Gravity::get_old_grav_vector() 10 0.1938 0.2025 0.2135 6.07% FillPatchIterator::Initialize 41 0.1574 0.1772 0.2105 5.99% Castro::construct_new_gravity() 10 0.1944 0.1951 0.1959 5.57% Amr::init() 1 0.192 0.1921 0.1921 5.46% check_for_negative_density() 10 0.02678 0.09127 0.1807 5.14% Amr::initialInit() 1 0.1783 0.1785 0.1787 5.08% FillPatchIterator::FillFromLevel0() 41 0.1175 0.135 0.1763 5.01% FillPatchSingleLevel 41 0.1174 0.1348 0.1761 5.01% Castro::initialize_do_advance() 10 0.1572 0.1652 0.1729 4.92% Amr::InitializeInit() 1 0.06086 0.1026 0.1509 4.29% Amr::defBaseLevel() 1 0.06085 0.1026 0.1509 4.29% FabArray::ParallelCopy() 41 0.07628 0.09721 0.1409 4.01% Castro::initData() 1 0.04552 0.08639 0.1336 3.80% Castro::expand_state() 10 0.1025 0.1118 0.1274 3.62% Castro::clean_state() 62 0.1143 0.1166 0.1186 3.37% Amr::FinalizeInit() 1 0.02751 0.07592 0.1174 3.34% Castro::estTimeStep() 21 0.0276 0.07485 0.1142 3.25% Castro::do_old_sources() 10 0.09182 0.1006 0.1083 3.08% FabArray::ParallelCopy_finish() 41 0.03502 0.0578 0.1078 3.07% amrex::Copy() 193 0.06263 0.08035 0.09561 2.72% Castro::computeInitialDt() 2 0.002153 0.0505 0.09215 2.62% FabArray::setVal() 143 0.05392 0.06835 0.07504 2.13% Castro::initialize_advance() 10 0.05063 0.06987 0.07379 2.10% Castro::computeTemp() 63 0.06703 0.06835 0.06984 1.99% Castro::do_new_sources() 10 0.05906 0.06347 0.06707 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04772 0.04874 0.04989 1.42% Castro::reset_internal_energy(Fab) 1008 0.0474 0.04844 0.0496 1.41% Castro::normalize_species() 62 0.04067 0.04139 0.04207 1.20% FabArray::ParallelCopy_nowait() 41 0.03301 0.03934 0.04132 1.18% StateDataPhysBCFunct::() 41 0.0347 0.03758 0.04105 1.17% StateData::FillBoundary(geom) 41 0.03457 0.03747 0.04095 1.16% Castro::construct_new_source() 50 0.02656 0.02983 0.03146 0.89% Gravity::interpolate_monopole_grav() 21 0.02768 0.02864 0.03029 0.86% Castro::post_init() 1 0.02426 0.02486 0.0252 0.72% Castro::construct_new_gravity_source() 10 0.02084 0.02333 0.02482 0.71% Amr::writePlotFile() 2 0.023 0.02321 0.02347 0.67% Castro::finalize_do_advance() 10 0.01238 0.0161 0.02037 0.58% Castro::post_timestep() 10 0.01585 0.01612 0.01634 0.46% VisMF::Write(FabArray) 2 0.01129 0.01223 0.01453 0.41% Castro::apply_source_to_state() 20 0.01046 0.01283 0.01365 0.39% FabArray::Saxpy() 20 0.0104 0.01278 0.0136 0.39% FabArray::setDomainBndry() 41 0.008443 0.01116 0.01319 0.38% Castro::check_for_nan() 20 0.009597 0.01063 0.01167 0.33% MultiFab::contains_nan() 20 0.009576 0.01061 0.01165 0.33% Castro::Castro() 1 0.01017 0.01073 0.01147 0.33% Castro::construct_old_source() 50 0.006319 0.009489 0.01037 0.29% Castro::construct_old_gravity_source() 10 0.006266 0.009418 0.0103 0.29% Castro::computeNewDt() 9 0.009213 0.009226 0.009238 0.26% Castro::enforce_min_density() 62 0.007324 0.007614 0.00799 0.23% Castro::initMFs() 1 0.006182 0.006624 0.007314 0.21% AmrLevel::AmrLevel(dm) 1 0.005073 0.005345 0.0057 0.16% StateData::define() 4 0.005052 0.005319 0.005673 0.16% Castro::swap_state_time_levels() 10 0.002984 0.003962 0.004297 0.12% Castro::finalize_advance() 10 0.003039 0.003258 0.003507 0.10% Castro::post_regrid() 1 0.001536 0.001658 0.002007 0.06% Castro::buildMetrics() 1 0.001593 0.001691 0.001824 0.05% Amr::InitAmr() 1 0.0002856 0.0003046 0.0003917 0.01% FabArrayBase::getCPC() 41 6.792e-05 8.234e-05 0.0001195 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.016e-05 9.439e-05 0.0001118 0.00% Castro::enforce_consistent_e() 1 7.76e-05 8.796e-05 0.0001046 0.00% DistributionMapping::LeastUsedCPUs() 1 5.582e-06 8.804e-05 0.0001044 0.00% Amr::writeSmallPlotFile() 1 3.098e-05 4.731e-05 6.492e-05 0.00% Castro::enforce_speed_limit() 62 2.247e-05 2.768e-05 3.496e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.509e-05 2.761e-05 0.00% Castro::retry_advance_ctu() 10 6.941e-06 9.049e-06 1.914e-05 0.00% Gravity::swapTimeLevels() 10 1.366e-05 1.52e-05 1.851e-05 0.00% Gravity::set_mass_offset() 10 8.667e-06 1.126e-05 1.321e-05 0.00% Castro::create_source_corrector() 10 6.45e-06 9.452e-06 1.314e-05 0.00% Castro::FluxRegCrseInit 10 6.625e-06 8.054e-06 1.129e-05 0.00% Amr::initSubcycle() 1 9.138e-06 9.838e-06 1.058e-05 0.00% Castro::FluxRegFineAdd() 10 2.052e-06 2.37e-06 2.852e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.122e-06 1.388e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-5-gb98bdae9fb67) finalized