MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-5-gb98bdae9fb67) initialized Starting run at 05:24:59 UTC on 2023-09-11. Successfully read inputs file ... Castro git describe: 23.09-4-ge16cd4ff2 AMReX git describe: 23.09-5-gb98bdae9f Microphysics git describe: 23.09-4-g2c408a9c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015356205 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373836655 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350848167 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334766282 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33411067 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.341631453 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.364420711 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312329403 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314342404 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315368556 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313813241 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009604648 seconds Ending run at 05:25:03 UTC on 2023-09-11. Run time = 3.554095728 Run time without initialization = 3.370283758 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.554 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3303 2.3590 2.3860 67.13% Gravity::make_radial_gravity() 21 0.3173 0.3288 0.3427 9.64% Castro::initData() 1 0.03959 0.08027 0.1159 3.26% Castro::estTimeStep() 21 0.03092 0.06673 0.1108 3.12% FabArray::setVal() 143 0.06569 0.07793 0.0929 2.61% amrex::Copy() 193 0.07235 0.08094 0.09074 2.55% check_for_negative_density() 10 0.03032 0.05934 0.09058 2.55% FabArray::ParallelCopy_finish() 41 0.03314 0.06242 0.07922 2.23% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04961 0.05157 1.45% FabArray::ParallelCopy_nowait() 41 0.0379 0.04247 0.04463 1.26% Castro::normalize_species() 62 0.04123 0.04242 0.04436 1.25% StateData::FillBoundary(geom) 41 0.03487 0.03876 0.04308 1.21% FillPatchIterator::Initialize 41 0.02752 0.03532 0.04122 1.16% Gravity::interpolate_monopole_grav() 21 0.02853 0.02886 0.02939 0.83% Castro::construct_new_gravity_source() 10 0.02311 0.02428 0.02588 0.73% Castro::initialize_do_advance() 10 0.01231 0.01922 0.02418 0.68% Castro::computeTemp() 63 0.01887 0.01995 0.02125 0.60% VisMF::Write(FabArray) 2 0.01238 0.01289 0.01562 0.44% Castro::initialize_advance() 10 0.009696 0.0122 0.01492 0.42% FabArray::Saxpy() 20 0.01213 0.01354 0.01452 0.41% FabArray::setDomainBndry() 41 0.008782 0.01216 0.01345 0.38% MultiFab::contains_nan() 20 0.01006 0.01116 0.01221 0.34% Castro::construct_old_gravity_source() 10 0.00767 0.0101 0.01092 0.31% Amr::writePlotFile() 2 0.006673 0.009325 0.01002 0.28% Amr::coarseTimeStep() 10 0.001682 0.008502 0.009753 0.27% Castro::initMFs() 1 0.006455 0.006886 0.008101 0.23% Castro::enforce_min_density() 62 0.007397 0.00761 0.007992 0.22% Castro::construct_new_source() 50 0.006312 0.006568 0.006971 0.20% Castro::swap_state_time_levels() 10 0.003625 0.004732 0.006489 0.18% StateData::define() 4 0.005216 0.005387 0.005874 0.17% main() 1 0.00373 0.004075 0.004579 0.13% Gravity::get_new_grav_vector() 11 0.003022 0.003704 0.004177 0.12% Gravity::get_old_grav_vector() 10 0.001497 0.001986 0.002466 0.07% Castro::buildMetrics() 1 0.001493 0.00155 0.001702 0.05% Castro::finalize_do_advance() 10 0.0003904 0.001211 0.00163 0.05% AmrLevel::FillPatch() 41 0.0006685 0.000977 0.001197 0.03% Amr::InitAmr() 1 0.0002628 0.0002905 0.0004408 0.01% Amr::timeStep() 10 0.0001899 0.0002303 0.0003515 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002838 0.0002985 0.0003231 0.01% Castro::do_advance_ctu() 10 0.0001419 0.0001773 0.0002232 0.01% DistributionMapping::LeastUsedCPUs() 1 7.225e-06 0.0001579 0.0001866 0.01% Castro::clean_state() 62 0.0001408 0.0001547 0.0001724 0.00% Castro::finalize_advance() 10 8.068e-05 9.887e-05 0.0001377 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001056 0.0001157 0.0001255 0.00% StateDataPhysBCFunct::() 41 8.827e-05 0.0001005 0.0001111 0.00% Castro::do_old_sources() 10 6.864e-05 9.25e-05 0.0001078 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.742e-05 0.0001037 0.00% Castro::construct_old_source() 50 5.269e-05 7.442e-05 9.264e-05 0.00% Castro::Castro() 1 5.81e-05 7.048e-05 8.67e-05 0.00% Amr::FinalizeInit() 1 3.724e-06 1.608e-05 8.275e-05 0.00% FabArray::ParallelCopy() 41 6.72e-05 7.383e-05 8.029e-05 0.00% FillPatchSingleLevel 41 5.512e-05 6.556e-05 7.751e-05 0.00% Amr::writeSmallPlotFile() 1 3.036e-05 5.102e-05 7.734e-05 0.00% Castro::do_new_sources() 10 4.805e-05 6.254e-05 7.729e-05 0.00% Castro::advance() 10 3.989e-05 5.57e-05 7.094e-05 0.00% Castro::subcycle_advance_ctu() 10 4.44e-05 5.513e-05 6.64e-05 0.00% Castro::computeNewDt() 9 9.793e-06 2.57e-05 5.773e-05 0.00% FabArrayBase::getCPC() 41 4.114e-05 5.036e-05 5.681e-05 0.00% Castro::construct_old_gravity() 10 4.26e-05 4.933e-05 5.596e-05 0.00% Castro::apply_source_to_state() 20 3.412e-05 4.511e-05 5.266e-05 0.00% Castro::construct_new_gravity() 10 3.479e-05 4.037e-05 5.043e-05 0.00% Amr::defBaseLevel() 1 2.539e-05 3.294e-05 3.91e-05 0.00% Castro::retry_advance_ctu() 10 6.96e-06 1.144e-05 3.84e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.219e-05 3.15e-05 3.636e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.562e-05 3.079e-05 0.00% Castro::expand_state() 10 2.198e-05 2.553e-05 3.013e-05 0.00% Castro::enforce_speed_limit() 62 2.418e-05 2.641e-05 2.936e-05 0.00% Castro::check_for_nan() 20 1.948e-05 2.115e-05 2.386e-05 0.00% Gravity::swapTimeLevels() 10 1.4e-05 1.606e-05 1.99e-05 0.00% Castro::post_timestep() 10 1.243e-05 1.463e-05 1.658e-05 0.00% Gravity::set_mass_offset() 10 9.075e-06 1.156e-05 1.445e-05 0.00% Castro::create_source_corrector() 10 8.119e-06 9.52e-06 1.142e-05 0.00% Castro::post_init() 1 3.053e-06 4.744e-06 1.128e-05 0.00% Amr::initSubcycle() 1 9.276e-06 9.837e-06 1.081e-05 0.00% Castro::FluxRegCrseInit 10 6.184e-06 7.521e-06 9.011e-06 0.00% Amr::initialInit() 1 1.257e-06 4.77e-06 8.904e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.48e-06 4.612e-06 7.072e-06 0.00% Castro::computeInitialDt() 2 3.987e-06 4.595e-06 5.277e-06 0.00% Amr::InitializeInit() 1 1.709e-06 2.4e-06 4.994e-06 0.00% Castro::post_regrid() 1 2.266e-06 3.244e-06 4.506e-06 0.00% Amr::init() 1 1.565e-06 2.438e-06 3.238e-06 0.00% Castro::FluxRegFineAdd() 10 2.074e-06 2.333e-06 2.733e-06 0.00% DistributionMapping::Distribute() 1 8.61e-07 1.049e-06 1.222e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.553 3.554 3.554 100.00% Amr::coarseTimeStep() 10 3.356 3.356 3.356 94.43% Amr::timeStep() 10 3.333 3.334 3.341 94.00% Castro::advance() 10 3.316 3.318 3.321 93.44% Castro::subcycle_advance_ctu() 10 3.222 3.233 3.242 91.23% Castro::do_advance_ctu() 10 3.222 3.233 3.242 91.23% Castro::construct_ctu_hydro_source() 10 2.434 2.439 2.444 68.76% Gravity::make_radial_gravity() 21 0.3341 0.3457 0.3583 10.08% AmrLevel::FillPatch() 41 0.1953 0.2224 0.2471 6.95% Gravity::get_new_grav_vector() 11 0.2266 0.2285 0.2295 6.46% Castro::construct_old_gravity() 10 0.1959 0.2054 0.2179 6.13% Gravity::get_old_grav_vector() 10 0.1947 0.2046 0.2168 6.10% FillPatchIterator::Initialize 41 0.1678 0.1916 0.214 6.02% Castro::construct_new_gravity() 10 0.1998 0.201 0.2021 5.69% Castro::initialize_do_advance() 10 0.1636 0.1865 0.2016 5.67% Amr::init() 1 0.1832 0.1834 0.1834 5.16% Amr::initialInit() 1 0.1674 0.1677 0.1679 4.72% FillPatchIterator::FillFromLevel0() 41 0.1163 0.1441 0.1644 4.63% FillPatchSingleLevel 41 0.1162 0.144 0.1643 4.62% Castro::expand_state() 10 0.1132 0.1292 0.1457 4.10% Amr::InitializeInit() 1 0.05976 0.1009 0.1365 3.84% Amr::defBaseLevel() 1 0.05976 0.1009 0.1365 3.84% Castro::clean_state() 62 0.117 0.1191 0.1246 3.51% FabArray::ParallelCopy() 41 0.07641 0.105 0.1237 3.48% Castro::initData() 1 0.0437 0.08439 0.1203 3.38% Castro::estTimeStep() 21 0.03092 0.06673 0.1108 3.12% Amr::FinalizeInit() 1 0.03131 0.06679 0.108 3.04% Castro::do_old_sources() 10 0.0963 0.1014 0.1054 2.96% FabArray::setVal() 143 0.06569 0.07793 0.0929 2.61% Castro::initialize_advance() 10 0.07159 0.08082 0.09125 2.57% amrex::Copy() 193 0.07235 0.08094 0.09074 2.55% check_for_negative_density() 10 0.03032 0.05934 0.09058 2.55% FabArray::ParallelCopy_finish() 41 0.03314 0.06242 0.07922 2.23% Castro::computeInitialDt() 2 0.002352 0.03793 0.07912 2.23% Castro::computeTemp() 63 0.06799 0.06986 0.07315 2.06% Castro::do_new_sources() 10 0.06146 0.06498 0.06912 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04811 0.04991 0.05189 1.46% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04961 0.05157 1.45% FabArray::ParallelCopy_nowait() 41 0.03797 0.04255 0.0447 1.26% Castro::normalize_species() 62 0.04123 0.04242 0.04436 1.25% StateDataPhysBCFunct::() 41 0.03496 0.03886 0.04318 1.21% StateData::FillBoundary(geom) 41 0.03487 0.03876 0.04308 1.21% Castro::construct_new_source() 50 0.02946 0.03085 0.03274 0.92% Gravity::interpolate_monopole_grav() 21 0.02853 0.02886 0.02939 0.83% Castro::post_init() 1 0.02809 0.02842 0.02867 0.81% Castro::construct_new_gravity_source() 10 0.02311 0.02428 0.02588 0.73% Amr::writePlotFile() 2 0.02519 0.02533 0.02565 0.72% Castro::finalize_do_advance() 10 0.0124 0.01776 0.02266 0.64% Castro::post_timestep() 10 0.01568 0.01634 0.01933 0.54% VisMF::Write(FabArray) 2 0.01238 0.01289 0.01562 0.44% Castro::apply_source_to_state() 20 0.01217 0.01358 0.01457 0.41% FabArray::Saxpy() 20 0.01213 0.01354 0.01452 0.41% FabArray::setDomainBndry() 41 0.008782 0.01216 0.01345 0.38% Castro::computeNewDt() 9 0.01211 0.01227 0.01241 0.35% Castro::check_for_nan() 20 0.01009 0.01118 0.01223 0.34% MultiFab::contains_nan() 20 0.01006 0.01116 0.01221 0.34% Castro::Castro() 1 0.01052 0.01092 0.01178 0.33% Castro::construct_old_source() 50 0.007723 0.01017 0.01101 0.31% Castro::construct_old_gravity_source() 10 0.00767 0.0101 0.01092 0.31% Castro::initMFs() 1 0.006455 0.006886 0.008101 0.23% Castro::enforce_min_density() 62 0.007397 0.00761 0.007992 0.22% Castro::swap_state_time_levels() 10 0.003625 0.004732 0.006489 0.18% AmrLevel::AmrLevel(dm) 1 0.005243 0.005419 0.005904 0.17% StateData::define() 4 0.005216 0.005387 0.005874 0.17% Castro::finalize_advance() 10 0.003099 0.003523 0.005409 0.15% Castro::post_regrid() 1 0.001613 0.00171 0.001973 0.06% Castro::buildMetrics() 1 0.001617 0.001677 0.001851 0.05% Amr::InitAmr() 1 0.0002721 0.0003003 0.0004516 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.264e-05 0.0001636 0.0001949 0.01% DistributionMapping::LeastUsedCPUs() 1 7.225e-06 0.0001579 0.0001866 0.01% Castro::enforce_consistent_e() 1 7.689e-05 8.742e-05 0.0001037 0.00% FabArrayBase::getCPC() 41 6.601e-05 7.597e-05 8.76e-05 0.00% Amr::writeSmallPlotFile() 1 3.036e-05 5.102e-05 7.734e-05 0.00% Castro::retry_advance_ctu() 10 6.96e-06 1.144e-05 3.84e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.562e-05 3.079e-05 0.00% Castro::enforce_speed_limit() 62 2.418e-05 2.641e-05 2.936e-05 0.00% Gravity::swapTimeLevels() 10 1.4e-05 1.606e-05 1.99e-05 0.00% Gravity::set_mass_offset() 10 9.075e-06 1.156e-05 1.445e-05 0.00% Castro::create_source_corrector() 10 8.119e-06 9.52e-06 1.142e-05 0.00% Amr::initSubcycle() 1 9.276e-06 9.837e-06 1.081e-05 0.00% Castro::FluxRegCrseInit 10 6.184e-06 7.521e-06 9.011e-06 0.00% Castro::FluxRegFineAdd() 10 2.074e-06 2.333e-06 2.733e-06 0.00% DistributionMapping::Distribute() 1 8.61e-07 1.049e-06 1.222e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 39 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-5-gb98bdae9fb67) finalized