MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-6-gae65b3afc481) initialized Starting run at 05:28:23 UTC on 2023-09-13. Successfully read inputs file ... Castro git describe: 23.09-5-g0aabe1705 AMReX git describe: 23.09-6-gae65b3afc Microphysics git describe: 23.09-6-g94b016d2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015492331 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359997856 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348855575 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331660609 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332268445 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349334995 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347595604 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314329289 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316703351 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315726632 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316423271 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009578408 seconds Ending run at 05:28:26 UTC on 2023-09-13. Run time = 3.573224392 Run time without initialization = 3.348145164 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.572 ... 3.573 ... 3.573 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2592 2.3331 2.3716 66.37% Gravity::make_radial_gravity() 21 0.3183 0.3267 0.3386 9.48% check_for_negative_density() 10 0.05576 0.09881 0.1759 4.92% Castro::estTimeStep() 21 0.04253 0.1051 0.1653 4.63% Castro::initData() 1 0.0384 0.08802 0.1527 4.27% FabArray::ParallelCopy_finish() 41 0.03461 0.05739 0.08847 2.48% amrex::Copy() 193 0.06399 0.07626 0.08498 2.38% FabArray::setVal() 143 0.06314 0.07125 0.08389 2.35% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04824 0.05053 1.41% Castro::normalize_species() 62 0.04096 0.04196 0.04346 1.22% FabArray::ParallelCopy_nowait() 41 0.03505 0.03983 0.04185 1.17% StateData::FillBoundary(geom) 41 0.0352 0.03733 0.03963 1.11% FillPatchIterator::Initialize 41 0.02684 0.03159 0.03635 1.02% Gravity::interpolate_monopole_grav() 21 0.02829 0.02883 0.03106 0.87% Castro::construct_new_gravity_source() 10 0.02215 0.02524 0.02994 0.84% Castro::initialize_do_advance() 10 0.01143 0.01733 0.02137 0.60% Castro::computeTemp() 63 0.01712 0.01897 0.02027 0.57% VisMF::Write(FabArray) 2 0.0127 0.01335 0.01611 0.45% FabArray::Saxpy() 20 0.01091 0.01302 0.01447 0.40% Castro::initialize_advance() 10 0.004117 0.01016 0.0138 0.39% FabArray::setDomainBndry() 41 0.008914 0.01089 0.01218 0.34% MultiFab::contains_nan() 20 0.00984 0.01074 0.01166 0.33% Castro::construct_old_gravity_source() 10 0.007042 0.009546 0.01017 0.28% Castro::initMFs() 1 0.006272 0.007409 0.0101 0.28% Amr::writePlotFile() 2 0.006477 0.009046 0.00973 0.27% Castro::enforce_min_density() 62 0.007249 0.007528 0.007894 0.22% StateData::define() 4 0.005151 0.00598 0.00785 0.22% Castro::construct_new_source() 50 0.005808 0.006191 0.006415 0.18% main() 1 0.00403 0.004637 0.004956 0.14% Castro::swap_state_time_levels() 10 0.003123 0.004191 0.004899 0.14% Gravity::get_new_grav_vector() 11 0.002971 0.00342 0.003945 0.11% Amr::coarseTimeStep() 10 0.0009037 0.002326 0.003607 0.10% Gravity::get_old_grav_vector() 10 0.001569 0.001952 0.002352 0.07% Castro::buildMetrics() 1 0.001464 0.001711 0.002248 0.06% Castro::finalize_do_advance() 10 0.0004865 0.001215 0.001554 0.04% AmrLevel::FillPatch() 41 0.0007309 0.000893 0.00104 0.03% Amr::InitAmr() 1 0.0002712 0.0003512 0.0005064 0.01% Amr::timeStep() 10 0.0001611 0.0002267 0.0003645 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.0002914 0.0003123 0.01% DistributionMapping::LeastUsedCPUs() 1 6.712e-06 0.0001951 0.0002821 0.01% Castro::do_advance_ctu() 10 0.000134 0.0001636 0.0002164 0.01% Castro::clean_state() 62 0.0001443 0.0001488 0.0001541 0.00% Castro::enforce_consistent_e() 1 7.646e-05 9.247e-05 0.0001411 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001013 0.0001124 0.0001243 0.00% StateDataPhysBCFunct::() 41 8.634e-05 0.0001002 0.0001168 0.00% Castro::finalize_advance() 10 8.146e-05 9.684e-05 0.0001163 0.00% Castro::do_old_sources() 10 6.993e-05 8.998e-05 0.0001089 0.00% Castro::Castro() 1 5.951e-05 7.103e-05 8.728e-05 0.00% FabArray::ParallelCopy() 41 6.124e-05 7.046e-05 7.898e-05 0.00% Castro::construct_old_source() 50 4.761e-05 6.567e-05 7.762e-05 0.00% Amr::FinalizeInit() 1 4.77e-06 1.453e-05 7.272e-05 0.00% FillPatchSingleLevel 41 5.529e-05 6.271e-05 6.742e-05 0.00% Amr::writeSmallPlotFile() 1 2.786e-05 5.187e-05 6.731e-05 0.00% Castro::do_new_sources() 10 4.857e-05 5.795e-05 6.708e-05 0.00% FabArrayBase::getCPC() 41 4.42e-05 4.963e-05 5.735e-05 0.00% Castro::subcycle_advance_ctu() 10 4.312e-05 4.959e-05 5.71e-05 0.00% Castro::advance() 10 3.384e-05 4.299e-05 5.293e-05 0.00% Castro::construct_old_gravity() 10 3.966e-05 4.524e-05 5.253e-05 0.00% Castro::apply_source_to_state() 20 3.499e-05 4.344e-05 5.057e-05 0.00% Castro::construct_new_gravity() 10 3.265e-05 3.82e-05 4.573e-05 0.00% Amr::defBaseLevel() 1 2.502e-05 3.289e-05 4.142e-05 0.00% FabArrayBase::CPC::define() 2 2.228e-05 2.613e-05 3.521e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.596e-05 2.578e-05 3.235e-05 0.00% Castro::enforce_speed_limit() 62 2.469e-05 2.713e-05 3.036e-05 0.00% Castro::expand_state() 10 1.741e-05 2.281e-05 2.677e-05 0.00% Castro::check_for_nan() 20 1.945e-05 2.072e-05 2.183e-05 0.00% Amr::initSubcycle() 1 9.091e-06 1.161e-05 1.773e-05 0.00% Castro::post_timestep() 10 1.283e-05 1.446e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 1.051e-05 1.32e-05 1.53e-05 0.00% Gravity::set_mass_offset() 10 8.976e-06 1.039e-05 1.243e-05 0.00% Castro::computeNewDt() 9 7.921e-06 9.892e-06 1.155e-05 0.00% Castro::create_source_corrector() 10 7.259e-06 8.481e-06 1.054e-05 0.00% Castro::FluxRegCrseInit 10 6.111e-06 7.579e-06 9.256e-06 0.00% Castro::computeInitialDt() 2 3.833e-06 5.763e-06 8.875e-06 0.00% Castro::retry_advance_ctu() 10 6.333e-06 7.466e-06 8.463e-06 0.00% Amr::init() 1 1.957e-06 3.064e-06 7.747e-06 0.00% Castro::post_regrid() 1 1.605e-06 4.1e-06 7.678e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.69e-06 4.571e-06 6.416e-06 0.00% Amr::InitializeInit() 1 1.697e-06 2.615e-06 5.094e-06 0.00% Castro::post_init() 1 2.976e-06 3.631e-06 4.212e-06 0.00% Castro::FluxRegFineAdd() 10 2.022e-06 2.202e-06 2.652e-06 0.00% Amr::initialInit() 1 1.405e-06 1.779e-06 2.207e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.167e-06 1.519e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.572 3.573 3.573 100.00% Amr::coarseTimeStep() 10 3.334 3.334 3.334 93.29% Amr::timeStep() 10 3.32 3.321 3.322 92.97% Castro::advance() 10 3.304 3.305 3.306 92.52% Castro::subcycle_advance_ctu() 10 3.218 3.228 3.236 90.57% Castro::do_advance_ctu() 10 3.218 3.228 3.236 90.57% Castro::construct_ctu_hydro_source() 10 2.448 2.452 2.456 68.73% Gravity::make_radial_gravity() 21 0.3335 0.3428 0.3519 9.85% Gravity::get_new_grav_vector() 11 0.2284 0.2299 0.2314 6.48% Amr::init() 1 0.2244 0.2246 0.2247 6.29% AmrLevel::FillPatch() 41 0.1817 0.2073 0.2201 6.16% Amr::initialInit() 1 0.2089 0.2092 0.2096 5.87% Castro::construct_old_gravity() 10 0.1941 0.199 0.2068 5.79% Gravity::get_old_grav_vector() 10 0.1929 0.1982 0.2062 5.77% Castro::construct_new_gravity() 10 0.2025 0.2032 0.204 5.71% FillPatchIterator::Initialize 41 0.1547 0.1775 0.1958 5.48% Castro::initialize_do_advance() 10 0.1592 0.1728 0.1814 5.08% Amr::InitializeInit() 1 0.05795 0.1096 0.1786 5.00% Amr::defBaseLevel() 1 0.05795 0.1096 0.1786 5.00% check_for_negative_density() 10 0.05576 0.09881 0.1759 4.92% Castro::estTimeStep() 21 0.04253 0.1051 0.1653 4.63% FillPatchIterator::FillFromLevel0() 41 0.1137 0.135 0.1601 4.48% FillPatchSingleLevel 41 0.1136 0.1349 0.16 4.48% Castro::initData() 1 0.04228 0.09207 0.1565 4.38% Amr::FinalizeInit() 1 0.03038 0.09964 0.1511 4.23% Castro::expand_state() 10 0.1018 0.1186 0.1275 3.57% FabArray::ParallelCopy() 41 0.07483 0.09737 0.1237 3.46% Castro::computeInitialDt() 2 0.002294 0.07154 0.1232 3.45% Castro::clean_state() 62 0.1118 0.1162 0.1206 3.37% Castro::do_old_sources() 10 0.0881 0.09264 0.09538 2.67% FabArray::ParallelCopy_finish() 41 0.03461 0.05739 0.08847 2.48% amrex::Copy() 193 0.06399 0.07626 0.08498 2.38% FabArray::setVal() 143 0.06314 0.07125 0.08389 2.35% Castro::initialize_advance() 10 0.06414 0.07298 0.08384 2.35% Castro::do_new_sources() 10 0.05831 0.06666 0.0792 2.22% Castro::computeTemp() 63 0.06346 0.06751 0.07104 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04633 0.04853 0.05082 1.42% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04824 0.05053 1.41% Castro::normalize_species() 62 0.04096 0.04196 0.04346 1.22% FabArray::ParallelCopy_nowait() 41 0.03514 0.0399 0.04192 1.17% StateDataPhysBCFunct::() 41 0.03528 0.03743 0.03974 1.11% StateData::FillBoundary(geom) 41 0.0352 0.03733 0.03963 1.11% Castro::construct_new_source() 50 0.02825 0.03143 0.03635 1.02% Castro::finalize_do_advance() 10 0.01287 0.02552 0.03415 0.96% Gravity::interpolate_monopole_grav() 21 0.02829 0.02883 0.03106 0.87% Castro::construct_new_gravity_source() 10 0.02215 0.02524 0.02994 0.84% Castro::post_init() 1 0.0271 0.02766 0.02798 0.78% Amr::writePlotFile() 2 0.02469 0.02504 0.02531 0.71% Castro::post_timestep() 10 0.01509 0.01575 0.01655 0.46% VisMF::Write(FabArray) 2 0.0127 0.01335 0.01611 0.45% Castro::apply_source_to_state() 20 0.01096 0.01306 0.0145 0.41% FabArray::Saxpy() 20 0.01091 0.01302 0.01447 0.40% Castro::Castro() 1 0.009997 0.01124 0.01421 0.40% FabArray::setDomainBndry() 41 0.008914 0.01089 0.01218 0.34% Castro::check_for_nan() 20 0.00986 0.01076 0.01168 0.33% MultiFab::contains_nan() 20 0.00984 0.01074 0.01166 0.33% Castro::construct_old_source() 50 0.00709 0.009612 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.007042 0.009546 0.01017 0.28% Castro::initMFs() 1 0.006272 0.007409 0.0101 0.28% Castro::computeNewDt() 9 0.00925 0.009262 0.009268 0.26% Castro::enforce_min_density() 62 0.007249 0.007528 0.007894 0.22% AmrLevel::AmrLevel(dm) 1 0.005176 0.006006 0.007881 0.22% StateData::define() 4 0.005151 0.00598 0.00785 0.22% Castro::swap_state_time_levels() 10 0.003123 0.004191 0.004899 0.14% Castro::finalize_advance() 10 0.00298 0.003707 0.004419 0.12% Castro::buildMetrics() 1 0.001574 0.001859 0.002473 0.07% Castro::post_regrid() 1 0.001576 0.001704 0.002091 0.06% Amr::InitAmr() 1 0.0002811 0.0003628 0.0005242 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.223e-05 0.0002008 0.0002897 0.01% DistributionMapping::LeastUsedCPUs() 1 6.712e-06 0.0001951 0.0002821 0.01% Castro::enforce_consistent_e() 1 7.646e-05 9.247e-05 0.0001411 0.00% FabArrayBase::getCPC() 41 7.003e-05 7.577e-05 8.33e-05 0.00% Amr::writeSmallPlotFile() 1 2.786e-05 5.187e-05 6.731e-05 0.00% FabArrayBase::CPC::define() 2 2.228e-05 2.613e-05 3.521e-05 0.00% Castro::enforce_speed_limit() 62 2.469e-05 2.713e-05 3.036e-05 0.00% Amr::initSubcycle() 1 9.091e-06 1.161e-05 1.773e-05 0.00% Gravity::swapTimeLevels() 10 1.051e-05 1.32e-05 1.53e-05 0.00% Gravity::set_mass_offset() 10 8.976e-06 1.039e-05 1.243e-05 0.00% Castro::create_source_corrector() 10 7.259e-06 8.481e-06 1.054e-05 0.00% Castro::FluxRegCrseInit 10 6.111e-06 7.579e-06 9.256e-06 0.00% Castro::retry_advance_ctu() 10 6.333e-06 7.466e-06 8.463e-06 0.00% Castro::FluxRegFineAdd() 10 2.022e-06 2.202e-06 2.652e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.167e-06 1.519e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 37 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-6-gae65b3afc481) finalized