MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-7-g4c79a836ae02) initialized Starting run at 05:23:25 UTC on 2023-09-14. Successfully read inputs file ... Castro git describe: 23.09-5-g0aabe1705 AMReX git describe: 23.09-7-g4c79a836a Microphysics git describe: 23.09-8-g171e787f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014686573 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.389980905 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362855729 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.394918004 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330663124 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363826227 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330738373 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.326233425 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31393212 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314738367 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310777796 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009919422 seconds Ending run at 05:23:29 UTC on 2023-09-14. Run time = 3.632995267 Run time without initialization = 3.453455357 Average number of zones advanced per microsecond: 0.759 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.633 ... 3.633 ... 3.633 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3090 2.3669 2.4327 66.96% Gravity::make_radial_gravity() 21 0.3533 0.3623 0.3743 10.30% check_for_negative_density() 10 0.07082 0.1386 0.1997 5.50% Castro::initData() 1 0.04197 0.07958 0.114 3.14% Castro::estTimeStep() 21 0.02675 0.06661 0.1027 2.83% FabArray::ParallelCopy_finish() 41 0.0348 0.0546 0.09328 2.57% amrex::Copy() 193 0.06362 0.07662 0.08798 2.42% FabArray::setVal() 143 0.05962 0.0675 0.07804 2.15% Castro::reset_internal_energy(Fab) 1008 0.04822 0.04943 0.0524 1.44% Castro::normalize_species() 62 0.0415 0.04226 0.04383 1.21% StateData::FillBoundary(geom) 41 0.03609 0.0393 0.04327 1.19% FabArray::ParallelCopy_nowait() 41 0.0352 0.04086 0.04283 1.18% FillPatchIterator::Initialize 41 0.02694 0.03219 0.03408 0.94% Gravity::interpolate_monopole_grav() 21 0.02826 0.02873 0.0292 0.80% Castro::construct_new_gravity_source() 10 0.02256 0.02435 0.02698 0.74% Castro::computeTemp() 63 0.01976 0.02034 0.02179 0.60% Castro::initialize_do_advance() 10 0.01131 0.01715 0.02026 0.56% VisMF::Write(FabArray) 2 0.01188 0.01292 0.01586 0.44% Castro::initialize_advance() 10 0.004089 0.00998 0.01343 0.37% FabArray::Saxpy() 20 0.01111 0.01254 0.01339 0.37% FabArray::setDomainBndry() 41 0.008734 0.01174 0.01293 0.36% Amr::writePlotFile() 2 0.006624 0.009889 0.01197 0.33% MultiFab::contains_nan() 20 0.009913 0.01086 0.01168 0.32% Castro::construct_old_gravity_source() 10 0.007338 0.009443 0.009971 0.27% Castro::enforce_min_density() 62 0.007177 0.007551 0.007924 0.22% Castro::initMFs() 1 0.006204 0.006739 0.007849 0.22% Castro::construct_new_source() 50 0.00573 0.006143 0.00629 0.17% StateData::define() 4 0.005067 0.005421 0.005878 0.16% Gravity::get_new_grav_vector() 11 0.002957 0.003826 0.005455 0.15% Castro::swap_state_time_levels() 10 0.003123 0.004104 0.00472 0.13% main() 1 0.003678 0.003956 0.004184 0.12% Amr::coarseTimeStep() 10 0.001755 0.002101 0.002561 0.07% Gravity::get_old_grav_vector() 10 0.001618 0.002048 0.002417 0.07% Castro::buildMetrics() 1 0.001484 0.001618 0.00196 0.05% Castro::finalize_do_advance() 10 0.0003933 0.001079 0.001392 0.04% AmrLevel::FillPatch() 41 0.0005938 0.0008035 0.0009297 0.03% Amr::InitAmr() 1 0.0002668 0.0003037 0.0005156 0.01% Amr::timeStep() 10 0.0001739 0.0002339 0.0005081 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002931 0.0003122 0.0003692 0.01% DistributionMapping::LeastUsedCPUs() 1 1.011e-05 0.0002493 0.0002961 0.01% Castro::do_advance_ctu() 10 0.0001314 0.0001612 0.0001869 0.01% Castro::clean_state() 62 0.0001276 0.0001548 0.0001819 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001042 0.0001119 0.0001253 0.00% Castro::finalize_advance() 10 7.496e-05 9.749e-05 0.0001202 0.00% StateDataPhysBCFunct::() 41 8.3e-05 0.0001004 0.0001138 0.00% Castro::do_old_sources() 10 6.867e-05 8.919e-05 0.0001015 0.00% Castro::enforce_consistent_e() 1 7.348e-05 8.812e-05 9.489e-05 0.00% Amr::FinalizeInit() 1 3.827e-06 1.574e-05 9.088e-05 0.00% Castro::Castro() 1 6.18e-05 7.047e-05 8.888e-05 0.00% Castro::construct_old_source() 50 5.121e-05 7.148e-05 8.792e-05 0.00% FabArray::ParallelCopy() 41 6.742e-05 7.525e-05 8.212e-05 0.00% Castro::do_new_sources() 10 5.037e-05 6.234e-05 7.659e-05 0.00% FillPatchSingleLevel 41 5.933e-05 6.569e-05 7.138e-05 0.00% FabArrayBase::getCPC() 41 4.31e-05 5.241e-05 6.921e-05 0.00% Castro::advance() 10 3.611e-05 4.482e-05 6.294e-05 0.00% Amr::writeSmallPlotFile() 1 3.105e-05 4.387e-05 6.032e-05 0.00% Castro::subcycle_advance_ctu() 10 3.732e-05 4.701e-05 5.862e-05 0.00% Castro::construct_new_gravity() 10 3.285e-05 3.843e-05 5.298e-05 0.00% Castro::construct_old_gravity() 10 4.028e-05 4.7e-05 5.286e-05 0.00% Castro::apply_source_to_state() 20 3.427e-05 4.292e-05 5.185e-05 0.00% Amr::defBaseLevel() 1 2.41e-05 3.749e-05 4.938e-05 0.00% Castro::enforce_speed_limit() 62 2.503e-05 2.862e-05 3.362e-05 0.00% FabArrayBase::CPC::define() 2 2.141e-05 2.507e-05 2.922e-05 0.00% Castro::expand_state() 10 1.809e-05 2.323e-05 2.748e-05 0.00% Castro::check_for_nan() 20 2.004e-05 2.164e-05 2.549e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.44e-05 1.848e-05 2.522e-05 0.00% Castro::post_timestep() 10 1.195e-05 1.471e-05 1.666e-05 0.00% Gravity::swapTimeLevels() 10 8.115e-06 1.329e-05 1.561e-05 0.00% Castro::computeNewDt() 9 8.796e-06 1.116e-05 1.386e-05 0.00% Gravity::set_mass_offset() 10 8.136e-06 9.724e-06 1.295e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.662e-06 5.493e-06 1.248e-05 0.00% Amr::initSubcycle() 1 9.781e-06 1.035e-05 1.096e-05 0.00% Castro::create_source_corrector() 10 7.175e-06 8.856e-06 1.076e-05 0.00% Amr::initialInit() 1 1.547e-06 4.158e-06 8.556e-06 0.00% Castro::retry_advance_ctu() 10 7.06e-06 7.586e-06 8.19e-06 0.00% Castro::FluxRegCrseInit 10 6.643e-06 7.168e-06 7.605e-06 0.00% Castro::post_regrid() 1 1.613e-06 3.435e-06 7.426e-06 0.00% DistributionMapping::Distribute() 1 9.51e-07 2.475e-06 6.548e-06 0.00% Amr::InitializeInit() 1 1.713e-06 2.518e-06 5.716e-06 0.00% Castro::computeInitialDt() 2 3.457e-06 4.353e-06 5.549e-06 0.00% Castro::post_init() 1 2.565e-06 3.494e-06 4.324e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.284e-06 2.835e-06 0.00% Amr::init() 1 1.609e-06 2.135e-06 2.782e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.633 3.633 3.633 100.00% Amr::coarseTimeStep() 10 3.439 3.439 3.439 94.67% Amr::timeStep() 10 3.426 3.426 3.426 94.31% Castro::advance() 10 3.409 3.41 3.41 93.87% Castro::subcycle_advance_ctu() 10 3.33 3.336 3.349 92.17% Castro::do_advance_ctu() 10 3.33 3.336 3.349 92.17% Castro::construct_ctu_hydro_source() 10 2.524 2.527 2.53 69.63% Gravity::make_radial_gravity() 21 0.3702 0.3785 0.3877 10.67% Gravity::get_new_grav_vector() 11 0.2386 0.2407 0.2424 6.67% Castro::construct_old_gravity() 10 0.2169 0.2228 0.2291 6.31% Gravity::get_old_grav_vector() 10 0.2163 0.2221 0.2285 6.29% AmrLevel::FillPatch() 41 0.1923 0.2095 0.2254 6.20% Castro::construct_new_gravity() 10 0.2117 0.2142 0.2154 5.93% FillPatchIterator::Initialize 41 0.1635 0.1791 0.2017 5.55% check_for_negative_density() 10 0.07082 0.1386 0.1997 5.50% Amr::init() 1 0.1788 0.1791 0.1791 4.93% Castro::initialize_do_advance() 10 0.1628 0.1729 0.1787 4.92% FillPatchIterator::FillFromLevel0() 41 0.119 0.1352 0.166 4.57% FillPatchSingleLevel 41 0.1189 0.1351 0.1659 4.57% Amr::initialInit() 1 0.1635 0.1637 0.164 4.51% Amr::InitializeInit() 1 0.06289 0.09987 0.1335 3.67% Amr::defBaseLevel() 1 0.06289 0.09987 0.1335 3.67% Castro::expand_state() 10 0.1071 0.1182 0.131 3.61% FabArray::ParallelCopy() 41 0.07753 0.09561 0.1286 3.54% Castro::clean_state() 62 0.1174 0.1191 0.1256 3.46% Castro::initData() 1 0.04548 0.08355 0.1181 3.25% Castro::estTimeStep() 21 0.02675 0.06661 0.1027 2.83% Castro::do_old_sources() 10 0.09364 0.09726 0.1012 2.79% Amr::FinalizeInit() 1 0.03017 0.06386 0.1008 2.78% FabArray::ParallelCopy_finish() 41 0.0348 0.0546 0.09328 2.57% amrex::Copy() 193 0.06362 0.07662 0.08798 2.42% FabArray::setVal() 143 0.05962 0.0675 0.07804 2.15% Castro::initialize_advance() 10 0.05689 0.06971 0.07651 2.11% Castro::computeTemp() 63 0.06832 0.07008 0.07456 2.05% Castro::do_new_sources() 10 0.05877 0.06498 0.07309 2.01% Castro::computeInitialDt() 2 0.002325 0.03592 0.07293 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04851 0.04974 0.05277 1.45% Castro::reset_internal_energy(Fab) 1008 0.04822 0.04943 0.0524 1.44% Castro::normalize_species() 62 0.0415 0.04226 0.04383 1.21% StateDataPhysBCFunct::() 41 0.0362 0.0394 0.04338 1.19% StateData::FillBoundary(geom) 41 0.03609 0.0393 0.04327 1.19% FabArray::ParallelCopy_nowait() 41 0.03527 0.04094 0.0429 1.18% Castro::construct_new_source() 50 0.02853 0.0305 0.03321 0.91% Gravity::interpolate_monopole_grav() 21 0.02826 0.02873 0.0292 0.80% Castro::finalize_do_advance() 10 0.01353 0.02173 0.02845 0.78% Castro::post_init() 1 0.02694 0.02753 0.0278 0.77% Castro::construct_new_gravity_source() 10 0.02256 0.02435 0.02698 0.74% Amr::writePlotFile() 2 0.02494 0.02534 0.0256 0.70% Castro::post_timestep() 10 0.01577 0.01611 0.01652 0.45% VisMF::Write(FabArray) 2 0.01188 0.01292 0.01586 0.44% Castro::apply_source_to_state() 20 0.01114 0.01258 0.01343 0.37% FabArray::Saxpy() 20 0.01111 0.01254 0.01339 0.37% FabArray::setDomainBndry() 41 0.008734 0.01174 0.01293 0.36% Castro::check_for_nan() 20 0.009934 0.01088 0.0117 0.32% MultiFab::contains_nan() 20 0.009913 0.01086 0.01168 0.32% Castro::Castro() 1 0.009939 0.01058 0.01165 0.32% Castro::computeNewDt() 9 0.01004 0.01005 0.01006 0.28% Castro::construct_old_source() 50 0.007389 0.009514 0.01005 0.28% Castro::construct_old_gravity_source() 10 0.007338 0.009443 0.009971 0.27% Castro::enforce_min_density() 62 0.007177 0.007551 0.007924 0.22% Castro::initMFs() 1 0.006204 0.006739 0.007849 0.22% AmrLevel::AmrLevel(dm) 1 0.005086 0.00544 0.005902 0.16% StateData::define() 4 0.005067 0.005421 0.005878 0.16% Castro::swap_state_time_levels() 10 0.003123 0.004104 0.00472 0.13% Castro::finalize_advance() 10 0.002944 0.003395 0.003899 0.11% Castro::buildMetrics() 1 0.001596 0.001755 0.002181 0.06% Castro::post_regrid() 1 0.001576 0.001706 0.002027 0.06% Amr::InitAmr() 1 0.0002766 0.000314 0.0005266 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.591e-05 0.0002572 0.0003043 0.01% DistributionMapping::LeastUsedCPUs() 1 1.011e-05 0.0002493 0.0002961 0.01% FabArrayBase::getCPC() 41 6.936e-05 7.748e-05 9.812e-05 0.00% Castro::enforce_consistent_e() 1 7.348e-05 8.812e-05 9.489e-05 0.00% Amr::writeSmallPlotFile() 1 3.105e-05 4.387e-05 6.032e-05 0.00% Castro::enforce_speed_limit() 62 2.503e-05 2.862e-05 3.362e-05 0.00% FabArrayBase::CPC::define() 2 2.141e-05 2.507e-05 2.922e-05 0.00% Gravity::swapTimeLevels() 10 8.115e-06 1.329e-05 1.561e-05 0.00% Gravity::set_mass_offset() 10 8.136e-06 9.724e-06 1.295e-05 0.00% Amr::initSubcycle() 1 9.781e-06 1.035e-05 1.096e-05 0.00% Castro::create_source_corrector() 10 7.175e-06 8.856e-06 1.076e-05 0.00% Castro::retry_advance_ctu() 10 7.06e-06 7.586e-06 8.19e-06 0.00% Castro::FluxRegCrseInit 10 6.643e-06 7.168e-06 7.605e-06 0.00% DistributionMapping::Distribute() 1 9.51e-07 2.475e-06 6.548e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.284e-06 2.835e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-7-g4c79a836ae02) finalized