MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-17-g48b3ec7cb7ad) initialized Starting run at 05:34:57 UTC on 2023-09-18. Successfully read inputs file ... Castro git describe: 23.09-9-g53faa2052 AMReX git describe: 23.09-17-g48b3ec7cb Microphysics git describe: 23.09-9-gdfc865b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015072109 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.380243418 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351613931 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329366657 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331677877 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353976052 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344366822 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313401106 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31305062 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313781699 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338612572 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.209332183 seconds Ending run at 05:35:01 UTC on 2023-09-18. Run time = 3.786364506 Run time without initialization = 3.585448114 Average number of zones advanced per microsecond: 0.731 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.785 ... 3.786 ... 3.786 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2991 2.3514 2.3975 63.32% Gravity::make_radial_gravity() 21 0.3234 0.331 0.3405 8.99% Amr::writePlotFile() 2 0.2057 0.2085 0.2094 5.53% check_for_negative_density() 10 0.06139 0.1114 0.166 4.38% Castro::estTimeStep() 21 0.02386 0.08803 0.1359 3.59% Castro::initData() 1 0.03906 0.08133 0.1322 3.49% FabArray::setVal() 143 0.06434 0.07379 0.08774 2.32% amrex::Copy() 193 0.06588 0.07607 0.08488 2.24% FabArray::ParallelCopy_finish() 41 0.03374 0.05667 0.08082 2.13% Castro::reset_internal_energy(Fab) 1008 0.04732 0.04854 0.05071 1.34% Castro::normalize_species() 62 0.04109 0.04258 0.0438 1.16% FabArray::ParallelCopy_nowait() 41 0.03494 0.03979 0.04154 1.10% StateData::FillBoundary(geom) 41 0.03326 0.03602 0.03959 1.05% FillPatchIterator::Initialize 41 0.02804 0.03172 0.03589 0.95% Gravity::interpolate_monopole_grav() 21 0.02827 0.02904 0.031 0.82% Castro::construct_new_gravity_source() 10 0.02225 0.02544 0.0301 0.80% Castro::initialize_do_advance() 10 0.01219 0.01731 0.0207 0.55% Castro::computeTemp() 63 0.01884 0.01968 0.02034 0.54% VisMF::Write(FabArray) 2 0.01242 0.01338 0.01617 0.43% Castro::initialize_advance() 10 0.008495 0.01144 0.01484 0.39% FabArray::Saxpy() 20 0.01081 0.01303 0.01438 0.38% MultiFab::contains_nan() 20 0.01083 0.01168 0.01263 0.33% FabArray::setDomainBndry() 41 0.009076 0.01103 0.01247 0.33% Castro::construct_old_gravity_source() 10 0.007051 0.009587 0.01024 0.27% Castro::initMFs() 1 0.006279 0.006747 0.008009 0.21% Castro::construct_new_source() 50 0.005826 0.006203 0.006521 0.17% Castro::enforce_min_density() 62 0.005692 0.006042 0.00637 0.17% StateData::define() 4 0.005208 0.00545 0.005969 0.16% main() 1 0.003948 0.004953 0.005294 0.14% Castro::swap_state_time_levels() 10 0.003111 0.004165 0.004822 0.13% Gravity::get_new_grav_vector() 11 0.002962 0.003597 0.003928 0.10% Amr::coarseTimeStep() 10 0.00173 0.002297 0.002827 0.07% Gravity::get_old_grav_vector() 10 0.001485 0.001899 0.002291 0.06% Castro::buildMetrics() 1 0.001453 0.001529 0.001705 0.05% Castro::finalize_do_advance() 10 0.0004845 0.001118 0.001423 0.04% AmrLevel::FillPatch() 41 0.0007524 0.0008393 0.001023 0.03% Amr::timeStep() 10 0.0001658 0.0002412 0.000517 0.01% Amr::InitAmr() 1 0.0002676 0.000305 0.0004732 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002714 0.0002834 0.0003002 0.01% DistributionMapping::LeastUsedCPUs() 1 8.414e-06 0.0001875 0.0002227 0.01% Castro::do_advance_ctu() 10 0.0001462 0.0001781 0.0002154 0.01% Castro::clean_state() 62 0.0001494 0.0001589 0.0001644 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001067 0.0001206 0.0001403 0.00% StateDataPhysBCFunct::() 41 8.762e-05 9.892e-05 0.0001119 0.00% Castro::do_old_sources() 10 7.261e-05 9.504e-05 0.0001091 0.00% Castro::finalize_advance() 10 8.303e-05 9.389e-05 0.0001078 0.00% Castro::enforce_consistent_e() 1 8.089e-05 8.897e-05 0.0001032 0.00% Castro::Castro() 1 5.599e-05 7.164e-05 9.033e-05 0.00% Castro::construct_old_source() 50 5.337e-05 7.381e-05 8.384e-05 0.00% FabArray::ParallelCopy() 41 7.083e-05 7.602e-05 8.369e-05 0.00% Amr::FinalizeInit() 1 4.105e-06 1.335e-05 7.241e-05 0.00% Castro::subcycle_advance_ctu() 10 4.103e-05 5.111e-05 7.223e-05 0.00% FillPatchSingleLevel 41 6.107e-05 6.556e-05 7.203e-05 0.00% Castro::do_new_sources() 10 5.023e-05 6.489e-05 7.078e-05 0.00% FabArrayBase::getCPC() 41 4.739e-05 5.301e-05 6.62e-05 0.00% Amr::writeSmallPlotFile() 1 3.128e-05 5.529e-05 6.333e-05 0.00% Castro::apply_source_to_state() 20 4.056e-05 4.393e-05 5.539e-05 0.00% Castro::construct_old_gravity() 10 4.217e-05 4.705e-05 5.371e-05 0.00% Castro::construct_new_gravity() 10 3.449e-05 4.093e-05 5.278e-05 0.00% Castro::advance() 10 3.558e-05 4.362e-05 5.146e-05 0.00% Amr::defBaseLevel() 1 2.449e-05 3.479e-05 4.825e-05 0.00% Castro::enforce_speed_limit() 62 2.793e-05 3.086e-05 3.482e-05 0.00% Castro::expand_state() 10 1.887e-05 2.52e-05 3.093e-05 0.00% FabArrayBase::CPC::define() 2 2.468e-05 2.659e-05 2.865e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.565e-05 2.262e-05 2.862e-05 0.00% Castro::check_for_nan() 20 2.024e-05 2.16e-05 2.278e-05 0.00% Gravity::swapTimeLevels() 10 8.778e-06 1.335e-05 1.585e-05 0.00% Castro::post_timestep() 10 1.253e-05 1.368e-05 1.576e-05 0.00% Castro::computeNewDt() 9 9.878e-06 1.25e-05 1.468e-05 0.00% Gravity::set_mass_offset() 10 9.199e-06 1.086e-05 1.345e-05 0.00% Castro::create_source_corrector() 10 7.691e-06 9.259e-06 1.045e-05 0.00% Amr::initSubcycle() 1 8.684e-06 9.612e-06 1.042e-05 0.00% Castro::retry_advance_ctu() 10 6.577e-06 7.463e-06 8.563e-06 0.00% Castro::FluxRegCrseInit 10 6.977e-06 7.523e-06 8.373e-06 0.00% Castro::post_init() 1 3.187e-06 4.738e-06 8.112e-06 0.00% Amr::init() 1 2.094e-06 3.019e-06 7.619e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.526e-06 4.836e-06 6.699e-06 0.00% Castro::computeInitialDt() 2 4.081e-06 4.756e-06 5.849e-06 0.00% Amr::InitializeInit() 1 1.786e-06 2.489e-06 5.376e-06 0.00% Castro::post_regrid() 1 2.156e-06 3.55e-06 4.62e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.341e-06 2.891e-06 0.00% Amr::initialInit() 1 1.31e-06 1.831e-06 2.425e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.258e-06 1.632e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.785 3.786 3.786 100.00% Amr::coarseTimeStep() 10 3.371 3.371 3.371 89.03% Amr::timeStep() 10 3.358 3.358 3.359 88.70% Castro::advance() 10 3.341 3.342 3.343 88.28% Castro::subcycle_advance_ctu() 10 3.253 3.262 3.27 86.36% Castro::do_advance_ctu() 10 3.252 3.262 3.27 86.36% Castro::construct_ctu_hydro_source() 10 2.48 2.484 2.486 65.67% Gravity::make_radial_gravity() 21 0.3394 0.3474 0.3549 9.37% Gravity::get_new_grav_vector() 11 0.2308 0.232 0.2334 6.16% Amr::writePlotFile() 2 0.2244 0.2246 0.2248 5.94% AmrLevel::FillPatch() 41 0.1863 0.2052 0.2232 5.90% Castro::construct_old_gravity() 10 0.1959 0.201 0.2078 5.49% Gravity::get_old_grav_vector() 10 0.1952 0.2002 0.2072 5.47% Castro::construct_new_gravity() 10 0.2036 0.2046 0.2057 5.43% Amr::init() 1 0.2003 0.2005 0.2005 5.30% FillPatchIterator::Initialize 41 0.1584 0.1757 0.1917 5.06% Amr::initialInit() 1 0.185 0.1853 0.1855 4.90% Castro::initialize_do_advance() 10 0.163 0.1719 0.183 4.83% check_for_negative_density() 10 0.06139 0.1114 0.166 4.38% Amr::InitializeInit() 1 0.0592 0.1018 0.1538 4.06% Amr::defBaseLevel() 1 0.0592 0.1018 0.1538 4.06% FillPatchIterator::FillFromLevel0() 41 0.1143 0.1329 0.1521 4.02% FillPatchSingleLevel 41 0.1142 0.1328 0.152 4.01% Castro::initData() 1 0.04328 0.08537 0.1361 3.59% Castro::estTimeStep() 21 0.02386 0.08803 0.1359 3.59% Castro::expand_state() 10 0.1048 0.1175 0.1293 3.41% Amr::FinalizeInit() 1 0.03164 0.08348 0.1262 3.33% Castro::clean_state() 62 0.1144 0.1163 0.1206 3.18% FabArray::ParallelCopy() 41 0.07543 0.09661 0.1159 3.06% Castro::computeInitialDt() 2 0.002524 0.05455 0.09717 2.57% Castro::do_old_sources() 10 0.08959 0.09243 0.09666 2.55% FabArray::setVal() 143 0.06434 0.07379 0.08774 2.32% Castro::initialize_advance() 10 0.06835 0.07609 0.08581 2.27% amrex::Copy() 193 0.06588 0.07607 0.08488 2.24% FabArray::ParallelCopy_finish() 41 0.03374 0.05667 0.08082 2.13% Castro::do_new_sources() 10 0.05876 0.06705 0.07944 2.10% Castro::computeTemp() 63 0.06694 0.0685 0.07128 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04762 0.04882 0.05101 1.35% Castro::reset_internal_energy(Fab) 1008 0.04732 0.04854 0.05071 1.34% Castro::normalize_species() 62 0.04109 0.04258 0.0438 1.16% FabArray::ParallelCopy_nowait() 41 0.03503 0.03986 0.04162 1.10% StateDataPhysBCFunct::() 41 0.03337 0.03612 0.03968 1.05% StateData::FillBoundary(geom) 41 0.03326 0.03602 0.03959 1.05% Castro::construct_new_source() 50 0.02834 0.03164 0.03651 0.96% Castro::finalize_do_advance() 10 0.0122 0.02544 0.03455 0.91% Gravity::interpolate_monopole_grav() 21 0.02827 0.02904 0.031 0.82% Castro::construct_new_gravity_source() 10 0.02225 0.02544 0.0301 0.80% Castro::post_init() 1 0.02833 0.02854 0.02872 0.76% Castro::post_timestep() 10 0.01563 0.016 0.01653 0.44% VisMF::Write(FabArray) 2 0.01242 0.01338 0.01617 0.43% Castro::apply_source_to_state() 20 0.01085 0.01307 0.01444 0.38% FabArray::Saxpy() 20 0.01081 0.01303 0.01438 0.38% Castro::check_for_nan() 20 0.01085 0.01171 0.01265 0.33% MultiFab::contains_nan() 20 0.01083 0.01168 0.01263 0.33% FabArray::setDomainBndry() 41 0.009076 0.01103 0.01247 0.33% Castro::Castro() 1 0.0102 0.0107 0.01161 0.31% Castro::construct_old_source() 50 0.007104 0.009661 0.01032 0.27% Castro::construct_old_gravity_source() 10 0.007051 0.009587 0.01024 0.27% Castro::computeNewDt() 9 0.009157 0.009176 0.009187 0.24% Castro::initMFs() 1 0.006279 0.006747 0.008009 0.21% Castro::enforce_min_density() 62 0.005692 0.006042 0.00637 0.17% AmrLevel::AmrLevel(dm) 1 0.005227 0.005473 0.005994 0.16% StateData::define() 4 0.005208 0.00545 0.005969 0.16% Castro::swap_state_time_levels() 10 0.003111 0.004165 0.004822 0.13% Castro::finalize_advance() 10 0.002954 0.003692 0.004421 0.12% Castro::buildMetrics() 1 0.001579 0.001668 0.001873 0.05% Castro::post_regrid() 1 0.001527 0.001678 0.001864 0.05% Amr::InitAmr() 1 0.0002774 0.0003147 0.000482 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.3e-05 0.0001936 0.0002309 0.01% DistributionMapping::LeastUsedCPUs() 1 8.414e-06 0.0001875 0.0002227 0.01% Castro::enforce_consistent_e() 1 8.089e-05 8.897e-05 0.0001032 0.00% FabArrayBase::getCPC() 41 7.243e-05 7.96e-05 9.356e-05 0.00% Amr::writeSmallPlotFile() 1 3.128e-05 5.529e-05 6.333e-05 0.00% Castro::enforce_speed_limit() 62 2.793e-05 3.086e-05 3.482e-05 0.00% FabArrayBase::CPC::define() 2 2.468e-05 2.659e-05 2.865e-05 0.00% Gravity::swapTimeLevels() 10 8.778e-06 1.335e-05 1.585e-05 0.00% Gravity::set_mass_offset() 10 9.199e-06 1.086e-05 1.345e-05 0.00% Castro::create_source_corrector() 10 7.691e-06 9.259e-06 1.045e-05 0.00% Amr::initSubcycle() 1 8.684e-06 9.612e-06 1.042e-05 0.00% Castro::retry_advance_ctu() 10 6.577e-06 7.463e-06 8.563e-06 0.00% Castro::FluxRegCrseInit 10 6.977e-06 7.523e-06 8.373e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.341e-06 2.891e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.258e-06 1.632e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-17-g48b3ec7cb7ad) finalized