MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-22-gb2052f2d2e5c) initialized Starting run at 05:24:53 UTC on 2023-09-19. Successfully read inputs file ... Castro git describe: 23.09-10-g575c8c93b AMReX git describe: 23.09-22-gb2052f2d2 Microphysics git describe: 23.09-9-gdfc865b7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01459086 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355450213 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337881475 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343818644 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325673212 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.334470843 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360537985 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312516182 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313615129 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310258434 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310529228 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009699377 seconds Ending run at 05:24:57 UTC on 2023-09-19. Run time = 3.54349125 Run time without initialization = 3.319491835 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2871 2.3390 2.3682 66.83% Gravity::make_radial_gravity() 21 0.3261 0.3333 0.3401 9.60% Castro::initData() 1 0.04001 0.08522 0.1512 4.27% Castro::estTimeStep() 21 0.0296 0.1025 0.1469 4.14% FabArray::ParallelCopy_finish() 41 0.03589 0.06455 0.0976 2.75% check_for_negative_density() 10 0.01432 0.04422 0.09741 2.75% amrex::Copy() 193 0.06376 0.07752 0.08929 2.52% FabArray::setVal() 143 0.06347 0.07298 0.08722 2.46% Castro::reset_internal_energy(Fab) 1008 0.04792 0.04971 0.05221 1.47% Castro::normalize_species() 62 0.04127 0.04269 0.04448 1.26% FabArray::ParallelCopy_nowait() 41 0.03476 0.03987 0.04195 1.18% StateData::FillBoundary(geom) 41 0.03585 0.03793 0.03934 1.11% FillPatchIterator::Initialize 41 0.02694 0.03197 0.03839 1.08% Gravity::interpolate_monopole_grav() 21 0.02791 0.02836 0.02895 0.82% Castro::construct_new_gravity_source() 10 0.02261 0.02392 0.02573 0.73% Castro::initialize_do_advance() 10 0.01169 0.01811 0.02345 0.66% Castro::computeTemp() 63 0.018 0.01959 0.02051 0.58% VisMF::Write(FabArray) 2 0.01312 0.0136 0.01575 0.44% Castro::initialize_advance() 10 0.004599 0.01026 0.014 0.40% FabArray::Saxpy() 20 0.01106 0.01272 0.01375 0.39% FabArray::setDomainBndry() 41 0.008442 0.01107 0.01212 0.34% MultiFab::contains_nan() 20 0.009451 0.01068 0.01141 0.32% Amr::coarseTimeStep() 10 0.00322 0.008057 0.01137 0.32% Castro::initMFs() 1 0.006315 0.007472 0.01068 0.30% Castro::construct_old_gravity_source() 10 0.006832 0.009504 0.01002 0.28% Amr::writePlotFile() 2 0.006036 0.00832 0.009037 0.26% Castro::enforce_min_density() 62 0.007089 0.007512 0.00811 0.23% StateData::define() 4 0.005226 0.005964 0.008007 0.23% Castro::construct_new_source() 50 0.005809 0.006359 0.006723 0.19% Castro::swap_state_time_levels() 10 0.003119 0.004135 0.004369 0.12% main() 1 0.00337 0.003904 0.004297 0.12% Gravity::get_new_grav_vector() 11 0.003025 0.003547 0.003923 0.11% Gravity::get_old_grav_vector() 10 0.001655 0.001954 0.002456 0.07% Castro::buildMetrics() 1 0.00147 0.001693 0.002312 0.07% Castro::finalize_do_advance() 10 0.0004021 0.001108 0.001441 0.04% AmrLevel::FillPatch() 41 0.0006937 0.0009621 0.001108 0.03% Amr::InitAmr() 1 0.00026 0.0003351 0.0004872 0.01% Amr::timeStep() 10 0.0001638 0.0002171 0.0003529 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002886 0.000307 0.0003465 0.01% DistributionMapping::LeastUsedCPUs() 1 8.423e-06 0.0001723 0.0002452 0.01% Castro::do_advance_ctu() 10 0.0001369 0.0001626 0.0002098 0.01% Castro::clean_state() 62 0.0001387 0.000155 0.0001689 0.00% Castro::enforce_consistent_e() 1 7.419e-05 0.0001011 0.0001448 0.00% Castro::finalize_advance() 10 9.245e-05 0.0001124 0.0001408 0.00% FillPatchIterator::FillFromLevel0() 41 9.827e-05 0.0001093 0.0001218 0.00% StateDataPhysBCFunct::() 41 9.147e-05 0.0001033 0.0001202 0.00% Amr::FinalizeInit() 1 4.355e-06 2.03e-05 0.0001047 0.00% Castro::do_old_sources() 10 7.221e-05 8.665e-05 0.0001026 0.00% FabArray::ParallelCopy() 41 7.158e-05 7.768e-05 9.01e-05 0.00% Castro::construct_old_source() 50 5.198e-05 6.792e-05 8.918e-05 0.00% Castro::Castro() 1 6.032e-05 7.272e-05 8.148e-05 0.00% FillPatchSingleLevel 41 6.12e-05 6.836e-05 7.395e-05 0.00% Castro::do_new_sources() 10 5.35e-05 6.267e-05 7.152e-05 0.00% Castro::advance() 10 3.867e-05 5.559e-05 7.016e-05 0.00% Amr::writeSmallPlotFile() 1 2.849e-05 5.754e-05 6.639e-05 0.00% Castro::subcycle_advance_ctu() 10 4.638e-05 5.085e-05 5.7e-05 0.00% Amr::defBaseLevel() 1 3.13e-05 4.485e-05 5.666e-05 0.00% Castro::construct_old_gravity() 10 4.063e-05 4.597e-05 5.644e-05 0.00% Castro::apply_source_to_state() 20 3.318e-05 4.709e-05 5.574e-05 0.00% FabArrayBase::getCPC() 41 4.365e-05 5.008e-05 5.531e-05 0.00% Castro::retry_advance_ctu() 10 6.837e-06 2.34e-05 5.442e-05 0.00% Castro::construct_new_gravity() 10 3.46e-05 3.844e-05 4.176e-05 0.00% Castro::enforce_speed_limit() 62 2.675e-05 3.085e-05 3.807e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.752e-05 2.478e-05 3.407e-05 0.00% Gravity::swapTimeLevels() 10 1.051e-05 1.503e-05 3.248e-05 0.00% Castro::computeNewDt() 9 9.204e-06 1.357e-05 2.963e-05 0.00% FabArrayBase::CPC::define() 2 2.176e-05 2.445e-05 2.778e-05 0.00% Castro::expand_state() 10 2.113e-05 2.292e-05 2.587e-05 0.00% Castro::post_timestep() 10 1.433e-05 1.735e-05 2.566e-05 0.00% Castro::check_for_nan() 20 2.009e-05 2.091e-05 2.222e-05 0.00% Gravity::set_mass_offset() 10 9.891e-06 1.239e-05 1.805e-05 0.00% Amr::initSubcycle() 1 8.848e-06 1.12e-05 1.734e-05 0.00% Castro::computeInitialDt() 2 3.676e-06 7.729e-06 1.689e-05 0.00% Castro::FluxRegCrseInit 10 5.791e-06 8.6e-06 1.423e-05 0.00% Castro::create_source_corrector() 10 7.324e-06 8.426e-06 9.389e-06 0.00% Amr::initialInit() 1 1.556e-06 3.437e-06 8.339e-06 0.00% Castro::post_init() 1 3.055e-06 4.147e-06 8.171e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.556e-06 5.669e-06 7.32e-06 0.00% Amr::init() 1 1.713e-06 2.707e-06 7.117e-06 0.00% Amr::InitializeInit() 1 1.8e-06 2.582e-06 4.835e-06 0.00% Castro::post_regrid() 1 1.703e-06 2.925e-06 4.272e-06 0.00% Castro::FluxRegFineAdd() 10 1.974e-06 2.252e-06 2.804e-06 0.00% DistributionMapping::Distribute() 1 8.97e-07 1.316e-06 1.514e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.306 3.306 3.306 93.28% Amr::timeStep() 10 3.283 3.286 3.291 92.87% Castro::advance() 10 3.267 3.268 3.27 92.29% Castro::subcycle_advance_ctu() 10 3.18 3.19 3.197 90.21% Castro::do_advance_ctu() 10 3.18 3.19 3.197 90.21% Castro::construct_ctu_hydro_source() 10 2.4 2.404 2.407 67.93% Gravity::make_radial_gravity() 21 0.3439 0.3495 0.3564 10.06% AmrLevel::FillPatch() 41 0.19 0.216 0.2342 6.61% Amr::init() 1 0.2233 0.2235 0.2236 6.31% Gravity::get_new_grav_vector() 11 0.2186 0.2199 0.2211 6.24% Castro::construct_old_gravity() 10 0.2093 0.214 0.2193 6.19% Gravity::get_old_grav_vector() 10 0.2087 0.2132 0.2188 6.17% Amr::initialInit() 1 0.2083 0.2088 0.2089 5.90% FillPatchIterator::Initialize 41 0.1604 0.1858 0.207 5.84% Castro::construct_new_gravity() 10 0.1935 0.194 0.195 5.50% Castro::initialize_do_advance() 10 0.1688 0.1819 0.1923 5.43% Amr::InitializeInit() 1 0.05951 0.1072 0.1788 5.05% Amr::defBaseLevel() 1 0.0595 0.1072 0.1788 5.05% FillPatchIterator::FillFromLevel0() 41 0.1157 0.1428 0.1716 4.84% FillPatchSingleLevel 41 0.1156 0.1427 0.1715 4.84% Castro::initData() 1 0.04384 0.08949 0.1559 4.40% Amr::FinalizeInit() 1 0.02955 0.1015 0.1492 4.21% Castro::estTimeStep() 21 0.0296 0.1025 0.1469 4.14% Castro::expand_state() 10 0.1111 0.1263 0.1381 3.90% FabArray::ParallelCopy() 41 0.07654 0.1046 0.1325 3.74% Castro::clean_state() 62 0.116 0.1189 0.1224 3.46% Castro::computeInitialDt() 2 0.002481 0.07422 0.1219 3.44% Castro::do_old_sources() 10 0.0935 0.09753 0.1009 2.85% FabArray::ParallelCopy_finish() 41 0.03589 0.06455 0.0976 2.75% check_for_negative_density() 10 0.01432 0.04422 0.09741 2.75% amrex::Copy() 193 0.06376 0.07752 0.08929 2.52% FabArray::setVal() 143 0.06347 0.07298 0.08722 2.46% Castro::initialize_advance() 10 0.06808 0.07432 0.08475 2.39% Castro::computeTemp() 63 0.06793 0.0696 0.07144 2.02% Castro::do_new_sources() 10 0.06011 0.0635 0.0672 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04821 0.05001 0.05255 1.48% Castro::reset_internal_energy(Fab) 1008 0.04792 0.04971 0.05221 1.47% Castro::normalize_species() 62 0.04127 0.04269 0.04448 1.26% FabArray::ParallelCopy_nowait() 41 0.03484 0.03994 0.04202 1.19% StateDataPhysBCFunct::() 41 0.03595 0.03803 0.03944 1.11% StateData::FillBoundary(geom) 41 0.03585 0.03793 0.03934 1.11% Castro::construct_new_source() 50 0.02884 0.03028 0.03163 0.89% Gravity::interpolate_monopole_grav() 21 0.02791 0.02836 0.02895 0.82% Castro::post_init() 1 0.02637 0.02686 0.02712 0.77% Castro::construct_new_gravity_source() 10 0.02261 0.02392 0.02573 0.73% Amr::writePlotFile() 2 0.02441 0.02453 0.02478 0.70% Castro::finalize_do_advance() 10 0.01522 0.01937 0.02373 0.67% Castro::post_timestep() 10 0.01574 0.0179 0.02134 0.60% VisMF::Write(FabArray) 2 0.01312 0.0136 0.01575 0.44% Castro::Castro() 1 0.01025 0.01152 0.01482 0.42% Castro::apply_source_to_state() 20 0.01111 0.01277 0.0138 0.39% FabArray::Saxpy() 20 0.01106 0.01272 0.01375 0.39% FabArray::setDomainBndry() 41 0.008442 0.01107 0.01212 0.34% Castro::check_for_nan() 20 0.009472 0.0107 0.01143 0.32% MultiFab::contains_nan() 20 0.009451 0.01068 0.01141 0.32% Castro::initMFs() 1 0.006315 0.007472 0.01068 0.30% Castro::construct_old_source() 50 0.006884 0.009572 0.01009 0.28% Castro::computeNewDt() 9 0.009979 0.01002 0.01003 0.28% Castro::construct_old_gravity_source() 10 0.006832 0.009504 0.01002 0.28% Castro::enforce_min_density() 62 0.007089 0.007512 0.00811 0.23% AmrLevel::AmrLevel(dm) 1 0.005252 0.005988 0.008038 0.23% StateData::define() 4 0.005226 0.005964 0.008007 0.23% Castro::finalize_advance() 10 0.002799 0.003806 0.005461 0.15% Castro::swap_state_time_levels() 10 0.003119 0.004135 0.004369 0.12% Castro::buildMetrics() 1 0.00159 0.001837 0.002515 0.07% Castro::post_regrid() 1 0.001543 0.001671 0.001943 0.05% Amr::InitAmr() 1 0.0002692 0.0003463 0.0005045 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.369e-05 0.0001793 0.0002532 0.01% DistributionMapping::LeastUsedCPUs() 1 8.423e-06 0.0001723 0.0002452 0.01% Castro::enforce_consistent_e() 1 7.419e-05 0.0001011 0.0001448 0.00% FabArrayBase::getCPC() 41 6.729e-05 7.453e-05 8.039e-05 0.00% Amr::writeSmallPlotFile() 1 2.849e-05 5.754e-05 6.639e-05 0.00% Castro::retry_advance_ctu() 10 6.837e-06 2.34e-05 5.442e-05 0.00% Castro::enforce_speed_limit() 62 2.675e-05 3.085e-05 3.807e-05 0.00% Gravity::swapTimeLevels() 10 1.051e-05 1.503e-05 3.248e-05 0.00% FabArrayBase::CPC::define() 2 2.176e-05 2.445e-05 2.778e-05 0.00% Gravity::set_mass_offset() 10 9.891e-06 1.239e-05 1.805e-05 0.00% Amr::initSubcycle() 1 8.848e-06 1.12e-05 1.734e-05 0.00% Castro::FluxRegCrseInit 10 5.791e-06 8.6e-06 1.423e-05 0.00% Castro::create_source_corrector() 10 7.324e-06 8.426e-06 9.389e-06 0.00% Castro::FluxRegFineAdd() 10 1.974e-06 2.252e-06 2.804e-06 0.00% DistributionMapping::Distribute() 1 8.97e-07 1.316e-06 1.514e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-22-gb2052f2d2e5c) finalized