MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-22-gb2052f2d2e5c) initialized Starting run at 05:24:46 UTC on 2023-09-20. Successfully read inputs file ... Castro git describe: 23.09-12-ga02f2dce8 AMReX git describe: 23.09-22-gb2052f2d2 Microphysics git describe: 23.09-11-g5ddd146e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016585763 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.378788029 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362579835 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332411811 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332560605 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358572297 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33441813 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310936875 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312058994 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311494287 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310642968 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009638593 seconds Ending run at 05:24:50 UTC on 2023-09-20. Run time = 3.610254508 Run time without initialization = 3.359336274 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.609 ... 3.61 ... 3.61 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3003 2.3483 2.4219 67.08% Gravity::make_radial_gravity() 21 0.3391 0.3485 0.3647 10.10% Castro::initData() 1 0.03989 0.09103 0.1626 4.50% Castro::estTimeStep() 21 0.02401 0.1103 0.1621 4.49% check_for_negative_density() 10 0.01611 0.09419 0.1432 3.97% FabArray::ParallelCopy_finish() 41 0.04103 0.05732 0.09005 2.49% amrex::Copy() 193 0.06362 0.07493 0.08204 2.27% FabArray::setVal() 143 0.05902 0.06751 0.0783 2.17% Castro::reset_internal_energy(Fab) 1008 0.04665 0.04914 0.05258 1.46% Castro::normalize_species() 62 0.04146 0.04269 0.04544 1.26% FabArray::ParallelCopy_nowait() 41 0.03522 0.03938 0.04092 1.13% StateData::FillBoundary(geom) 41 0.03496 0.03805 0.04005 1.11% FillPatchIterator::Initialize 41 0.0277 0.03162 0.03524 0.98% Gravity::interpolate_monopole_grav() 21 0.02802 0.02869 0.02988 0.83% Castro::construct_new_gravity_source() 10 0.02215 0.02434 0.02766 0.77% Castro::computeTemp() 63 0.01689 0.01899 0.02076 0.58% Castro::initialize_do_advance() 10 0.01228 0.01726 0.02008 0.56% VisMF::Write(FabArray) 2 0.01224 0.01347 0.01759 0.49% FabArray::Saxpy() 20 0.01048 0.01269 0.01383 0.38% Castro::initialize_advance() 10 0.004085 0.01019 0.01373 0.38% Amr::writePlotFile() 2 0.006425 0.01081 0.01283 0.36% FabArray::setDomainBndry() 41 0.008886 0.01074 0.01241 0.34% MultiFab::contains_nan() 20 0.009779 0.01042 0.0116 0.32% Castro::construct_old_gravity_source() 10 0.007016 0.009486 0.01008 0.28% Castro::initMFs() 1 0.006215 0.007501 0.009865 0.27% StateData::define() 4 0.005204 0.00612 0.007901 0.22% Castro::enforce_min_density() 62 0.007086 0.00737 0.007846 0.22% Castro::swap_state_time_levels() 10 0.003099 0.004644 0.006626 0.18% Castro::construct_new_source() 50 0.005646 0.006231 0.006506 0.18% main() 1 0.003236 0.004036 0.004594 0.13% Gravity::get_new_grav_vector() 11 0.00299 0.003591 0.004243 0.12% Gravity::get_old_grav_vector() 10 0.001499 0.001923 0.002405 0.07% Amr::coarseTimeStep() 10 0.0009977 0.001729 0.002293 0.06% Castro::buildMetrics() 1 0.001457 0.001752 0.002262 0.06% Castro::finalize_do_advance() 10 0.0004403 0.00106 0.001345 0.04% AmrLevel::FillPatch() 41 0.000739 0.0008611 0.001114 0.03% Amr::InitAmr() 1 0.0002604 0.0003459 0.0004988 0.01% Amr::timeStep() 10 0.0001681 0.000227 0.0004151 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002682 0.000301 0.0003355 0.01% DistributionMapping::LeastUsedCPUs() 1 7.484e-06 0.0001881 0.0002784 0.01% Castro::clean_state() 62 0.0001425 0.0001534 0.0001712 0.00% Castro::do_advance_ctu() 10 0.0001327 0.000152 0.0001641 0.00% Castro::enforce_consistent_e() 1 7.602e-05 9.744e-05 0.0001391 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001033 0.0001101 0.0001248 0.00% Castro::finalize_advance() 10 7.996e-05 9.466e-05 0.0001146 0.00% StateDataPhysBCFunct::() 41 8.935e-05 0.0001009 0.0001137 0.00% Castro::do_old_sources() 10 6.713e-05 8.894e-05 0.000103 0.00% FabArray::ParallelCopy() 41 6.508e-05 7.438e-05 8.429e-05 0.00% Castro::Castro() 1 5.952e-05 7.146e-05 8.208e-05 0.00% Castro::construct_old_source() 50 4.181e-05 6.632e-05 8.114e-05 0.00% Castro::apply_source_to_state() 20 4.174e-05 5.043e-05 7.582e-05 0.00% FillPatchSingleLevel 41 5.926e-05 6.773e-05 7.419e-05 0.00% Castro::do_new_sources() 10 5.019e-05 6.488e-05 7.19e-05 0.00% Castro::subcycle_advance_ctu() 10 4.342e-05 5.192e-05 6.935e-05 0.00% Amr::FinalizeInit() 1 4.387e-06 1.339e-05 6.566e-05 0.00% Amr::writeSmallPlotFile() 1 3.177e-05 4.269e-05 5.719e-05 0.00% FabArrayBase::getCPC() 41 4.383e-05 5.027e-05 5.669e-05 0.00% Castro::advance() 10 3.831e-05 4.463e-05 5.276e-05 0.00% Castro::construct_old_gravity() 10 4.153e-05 4.716e-05 5.247e-05 0.00% Castro::construct_new_gravity() 10 3.655e-05 3.927e-05 4.59e-05 0.00% Amr::defBaseLevel() 1 2.973e-05 3.491e-05 4.524e-05 0.00% Castro::enforce_speed_limit() 62 2.615e-05 3.208e-05 4.142e-05 0.00% FabArrayBase::CPC::define() 2 1.965e-05 2.673e-05 3.421e-05 0.00% Castro::expand_state() 10 2.101e-05 2.477e-05 3.131e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.128e-05 2.448e-05 2.711e-05 0.00% Castro::check_for_nan() 20 1.87e-05 2.128e-05 2.313e-05 0.00% Gravity::swapTimeLevels() 10 9.872e-06 1.373e-05 1.92e-05 0.00% Amr::initSubcycle() 1 9.062e-06 1.146e-05 1.745e-05 0.00% Castro::post_timestep() 10 1.27e-05 1.493e-05 1.638e-05 0.00% Gravity::set_mass_offset() 10 7.977e-06 1.063e-05 1.307e-05 0.00% Castro::computeNewDt() 9 7.926e-06 9.201e-06 1.166e-05 0.00% Castro::create_source_corrector() 10 6.997e-06 8.501e-06 1.132e-05 0.00% Castro::retry_advance_ctu() 10 6.961e-06 7.562e-06 8.445e-06 0.00% Castro::post_regrid() 1 2.924e-06 4.091e-06 7.634e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.823e-06 4.815e-06 7.517e-06 0.00% Castro::FluxRegCrseInit 10 6.491e-06 6.931e-06 7.459e-06 0.00% Castro::computeInitialDt() 2 3.804e-06 4.654e-06 5.743e-06 0.00% Castro::post_init() 1 2.342e-06 3.711e-06 4.811e-06 0.00% Amr::InitializeInit() 1 1.82e-06 2.458e-06 4.674e-06 0.00% Amr::init() 1 1.819e-06 2.237e-06 2.703e-06 0.00% Amr::initialInit() 1 1.316e-06 1.748e-06 2.489e-06 0.00% Castro::FluxRegFineAdd() 10 1.879e-06 2.049e-06 2.199e-06 0.00% DistributionMapping::Distribute() 1 9.4e-07 1.232e-06 1.847e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.609 3.61 3.61 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 92.66% Amr::timeStep() 10 3.332 3.333 3.333 92.33% Castro::advance() 10 3.316 3.317 3.317 91.88% Castro::subcycle_advance_ctu() 10 3.234 3.243 3.255 90.17% Castro::do_advance_ctu() 10 3.234 3.243 3.255 90.17% Castro::construct_ctu_hydro_source() 10 2.46 2.463 2.467 68.32% Gravity::make_radial_gravity() 21 0.3539 0.3641 0.3783 10.48% Amr::init() 1 0.2502 0.2504 0.2505 6.94% Gravity::get_new_grav_vector() 11 0.2334 0.2353 0.2373 6.57% Amr::initialInit() 1 0.2327 0.2335 0.2339 6.48% Castro::construct_old_gravity() 10 0.2066 0.2131 0.2245 6.22% Gravity::get_old_grav_vector() 10 0.206 0.2125 0.224 6.20% AmrLevel::FillPatch() 41 0.1873 0.2074 0.223 6.18% FillPatchIterator::Initialize 41 0.1573 0.1775 0.199 5.51% Castro::construct_new_gravity() 10 0.1961 0.1975 0.1986 5.50% Amr::InitializeInit() 1 0.05868 0.113 0.1907 5.28% Amr::defBaseLevel() 1 0.05867 0.113 0.1906 5.28% Castro::initialize_do_advance() 10 0.1653 0.1736 0.1788 4.95% Amr::FinalizeInit() 1 0.04314 0.1205 0.1749 4.85% Castro::initData() 1 0.04376 0.09545 0.1687 4.67% FillPatchIterator::FillFromLevel0() 41 0.1179 0.1352 0.1624 4.50% FillPatchSingleLevel 41 0.1177 0.1351 0.1623 4.50% Castro::estTimeStep() 21 0.02401 0.1103 0.1621 4.49% check_for_negative_density() 10 0.01611 0.09419 0.1432 3.97% Castro::computeInitialDt() 2 0.003548 0.08136 0.1356 3.76% Castro::expand_state() 10 0.1061 0.1192 0.1271 3.52% FabArray::ParallelCopy() 41 0.07997 0.09685 0.1254 3.47% Castro::clean_state() 62 0.1129 0.1176 0.1238 3.43% Castro::do_old_sources() 10 0.08952 0.0936 0.09572 2.65% FabArray::ParallelCopy_finish() 41 0.04103 0.05732 0.09005 2.49% amrex::Copy() 193 0.06362 0.07493 0.08204 2.27% Castro::initialize_advance() 10 0.05715 0.0703 0.07927 2.20% FabArray::setVal() 143 0.05902 0.06751 0.0783 2.17% Castro::do_new_sources() 10 0.0591 0.06498 0.07359 2.04% Castro::computeTemp() 63 0.06382 0.06843 0.07305 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04693 0.04944 0.05291 1.47% Castro::reset_internal_energy(Fab) 1008 0.04665 0.04914 0.05258 1.46% Castro::normalize_species() 62 0.04146 0.04269 0.04544 1.26% FabArray::ParallelCopy_nowait() 41 0.03531 0.03945 0.04099 1.14% StateDataPhysBCFunct::() 41 0.03506 0.03815 0.04015 1.11% StateData::FillBoundary(geom) 41 0.03496 0.03805 0.04005 1.11% Castro::post_init() 1 0.03798 0.03896 0.03965 1.10% Castro::construct_new_source() 50 0.02835 0.03057 0.0341 0.94% Gravity::interpolate_monopole_grav() 21 0.02802 0.02869 0.02988 0.83% Castro::construct_new_gravity_source() 10 0.02215 0.02434 0.02766 0.77% Amr::writePlotFile() 2 0.02599 0.02663 0.02754 0.76% Castro::finalize_do_advance() 10 0.01175 0.02105 0.02732 0.76% VisMF::Write(FabArray) 2 0.01224 0.01347 0.01759 0.49% Castro::post_timestep() 10 0.01534 0.01573 0.01592 0.44% Castro::Castro() 1 0.009459 0.01118 0.01398 0.39% Castro::apply_source_to_state() 20 0.01053 0.01274 0.01389 0.38% FabArray::Saxpy() 20 0.01048 0.01269 0.01383 0.38% FabArray::setDomainBndry() 41 0.008886 0.01074 0.01241 0.34% Castro::check_for_nan() 20 0.0098 0.01044 0.01162 0.32% MultiFab::contains_nan() 20 0.009779 0.01042 0.0116 0.32% Castro::construct_old_source() 50 0.007058 0.009553 0.01016 0.28% Castro::construct_old_gravity_source() 10 0.007016 0.009486 0.01008 0.28% Castro::initMFs() 1 0.006215 0.007501 0.009865 0.27% Castro::computeNewDt() 9 0.009008 0.009014 0.009018 0.25% AmrLevel::AmrLevel(dm) 1 0.00523 0.006144 0.007928 0.22% StateData::define() 4 0.005204 0.00612 0.007901 0.22% Castro::enforce_min_density() 62 0.007086 0.00737 0.007846 0.22% Castro::swap_state_time_levels() 10 0.003099 0.004644 0.006626 0.18% Castro::finalize_advance() 10 0.002983 0.003413 0.003824 0.11% Castro::post_regrid() 1 0.001582 0.001994 0.002975 0.08% Castro::buildMetrics() 1 0.001578 0.001902 0.002482 0.07% Amr::InitAmr() 1 0.0002697 0.0003574 0.0005148 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.314e-05 0.0001941 0.0002873 0.01% DistributionMapping::LeastUsedCPUs() 1 7.484e-06 0.0001881 0.0002784 0.01% Castro::enforce_consistent_e() 1 7.602e-05 9.744e-05 0.0001391 0.00% FabArrayBase::getCPC() 41 6.626e-05 7.7e-05 9.041e-05 0.00% Amr::writeSmallPlotFile() 1 3.177e-05 4.269e-05 5.719e-05 0.00% Castro::enforce_speed_limit() 62 2.615e-05 3.208e-05 4.142e-05 0.00% FabArrayBase::CPC::define() 2 1.965e-05 2.673e-05 3.421e-05 0.00% Gravity::swapTimeLevels() 10 9.872e-06 1.373e-05 1.92e-05 0.00% Amr::initSubcycle() 1 9.062e-06 1.146e-05 1.745e-05 0.00% Gravity::set_mass_offset() 10 7.977e-06 1.063e-05 1.307e-05 0.00% Castro::create_source_corrector() 10 6.997e-06 8.501e-06 1.132e-05 0.00% Castro::retry_advance_ctu() 10 6.961e-06 7.562e-06 8.445e-06 0.00% Castro::FluxRegCrseInit 10 6.491e-06 6.931e-06 7.459e-06 0.00% Castro::FluxRegFineAdd() 10 1.879e-06 2.049e-06 2.199e-06 0.00% DistributionMapping::Distribute() 1 9.4e-07 1.232e-06 1.847e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-22-gb2052f2d2e5c) finalized