MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-22-gb2052f2d2e5c) initialized Starting run at 05:21:39 UTC on 2023-09-21. Successfully read inputs file ... Castro git describe: 23.09-15-ga7802fd46 AMReX git describe: 23.09-22-gb2052f2d2 Microphysics git describe: 23.09-11-g5ddd146e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013829752 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360838687 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342496435 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.3291529 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328536245 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329353685 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352844227 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317018678 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312009605 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311138255 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310622621 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009990985 seconds Ending run at 05:21:43 UTC on 2023-09-21. Run time = 3.494016399 Run time without initialization = 3.309760821 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.492 ... 3.493 ... 3.494 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2689 2.3346 2.3825 68.19% Gravity::make_radial_gravity() 21 0.3075 0.3158 0.3357 9.61% check_for_negative_density() 10 0.02365 0.07268 0.1435 4.11% Castro::initData() 1 0.0406 0.08056 0.1215 3.48% FabArray::ParallelCopy_finish() 41 0.03437 0.05867 0.1079 3.09% Castro::estTimeStep() 21 0.02237 0.069 0.1056 3.02% amrex::Copy() 193 0.06072 0.08184 0.09992 2.86% FabArray::setVal() 143 0.05355 0.06942 0.0757 2.17% Castro::reset_internal_energy(Fab) 1008 0.04654 0.04776 0.04897 1.40% Castro::normalize_species() 62 0.04079 0.04131 0.0424 1.21% FabArray::ParallelCopy_nowait() 41 0.03353 0.03971 0.04187 1.20% StateData::FillBoundary(geom) 41 0.03436 0.03753 0.04014 1.15% FillPatchIterator::Initialize 41 0.02617 0.0314 0.03507 1.00% Gravity::interpolate_monopole_grav() 21 0.02802 0.02852 0.03052 0.87% Castro::construct_new_gravity_source() 10 0.02139 0.02367 0.02527 0.72% Castro::computeTemp() 63 0.01799 0.01911 0.01998 0.57% Castro::initialize_do_advance() 10 0.01101 0.01669 0.01778 0.51% VisMF::Write(FabArray) 2 0.01156 0.01269 0.01506 0.43% Castro::initialize_advance() 10 0.003803 0.01084 0.01396 0.40% FabArray::Saxpy() 20 0.01065 0.01285 0.01387 0.40% FabArray::setDomainBndry() 41 0.008541 0.01129 0.01297 0.37% MultiFab::contains_nan() 20 0.009611 0.0104 0.01151 0.33% Amr::writePlotFile() 2 0.006045 0.008515 0.01102 0.32% Castro::construct_old_gravity_source() 10 0.006514 0.00952 0.0105 0.30% Castro::enforce_min_density() 62 0.007095 0.007439 0.00795 0.23% Castro::initMFs() 1 0.00623 0.006712 0.007515 0.22% Castro::construct_new_source() 50 0.005644 0.006462 0.006951 0.20% StateData::define() 4 0.005107 0.005489 0.005818 0.17% main() 1 0.00301 0.004018 0.004979 0.14% Castro::swap_state_time_levels() 10 0.003043 0.004045 0.004384 0.13% Amr::coarseTimeStep() 10 0.001472 0.003102 0.003921 0.11% Gravity::get_new_grav_vector() 11 0.002671 0.003343 0.003797 0.11% Gravity::get_old_grav_vector() 10 0.001638 0.002007 0.002321 0.07% Castro::buildMetrics() 1 0.001495 0.001581 0.001705 0.05% Castro::finalize_do_advance() 10 0.0004737 0.0009042 0.001016 0.03% AmrLevel::FillPatch() 41 0.000685 0.0007257 0.0008033 0.02% Amr::InitAmr() 1 0.0002654 0.0003328 0.0004931 0.01% Amr::timeStep() 10 0.0001616 0.0002422 0.0004229 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002743 0.000295 0.0003225 0.01% DistributionMapping::LeastUsedCPUs() 1 7.25e-06 0.0001887 0.000257 0.01% Castro::do_advance_ctu() 10 0.0001453 0.0001715 0.0001971 0.01% StateDataPhysBCFunct::() 41 9.01e-05 0.0001282 0.0001745 0.00% Castro::clean_state() 62 0.0001421 0.0001555 0.0001678 0.00% Castro::finalize_advance() 10 9.323e-05 0.0001081 0.0001259 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001016 0.0001139 0.0001236 0.00% Castro::enforce_consistent_e() 1 8.068e-05 9.216e-05 0.0001187 0.00% Castro::Castro() 1 6.357e-05 8.814e-05 0.0001154 0.00% Castro::do_old_sources() 10 7.902e-05 9.919e-05 0.0001114 0.00% Castro::construct_old_source() 50 4.449e-05 7.236e-05 9.545e-05 0.00% FabArray::ParallelCopy() 41 7.048e-05 7.984e-05 9.479e-05 0.00% Castro::do_new_sources() 10 5.108e-05 6.501e-05 7.64e-05 0.00% Amr::FinalizeInit() 1 4.42e-06 1.366e-05 7.475e-05 0.00% FillPatchSingleLevel 41 6.207e-05 6.763e-05 7.23e-05 0.00% Castro::subcycle_advance_ctu() 10 4.357e-05 5.683e-05 7.04e-05 0.00% FabArrayBase::getCPC() 41 3.903e-05 5.202e-05 6.7e-05 0.00% Amr::writeSmallPlotFile() 1 3.245e-05 4.627e-05 6.116e-05 0.00% Castro::advance() 10 3.812e-05 4.63e-05 5.356e-05 0.00% Castro::apply_source_to_state() 20 4.081e-05 4.83e-05 5.349e-05 0.00% Castro::construct_old_gravity() 10 3.822e-05 4.506e-05 5.045e-05 0.00% Castro::construct_new_gravity() 10 3.393e-05 3.884e-05 4.717e-05 0.00% Amr::defBaseLevel() 1 2.909e-05 3.429e-05 4.288e-05 0.00% Castro::expand_state() 10 2.011e-05 2.554e-05 3.285e-05 0.00% Castro::enforce_speed_limit() 62 2.609e-05 2.989e-05 3.259e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.755e-05 2.427e-05 2.837e-05 0.00% FabArrayBase::CPC::define() 2 2.201e-05 2.407e-05 2.806e-05 0.00% Amr::initSubcycle() 1 9.248e-06 1.187e-05 2.532e-05 0.00% Castro::check_for_nan() 20 1.825e-05 2.043e-05 2.334e-05 0.00% Castro::post_timestep() 10 1.342e-05 1.512e-05 1.752e-05 0.00% Gravity::swapTimeLevels() 10 8.307e-06 1.383e-05 1.689e-05 0.00% Gravity::set_mass_offset() 10 7.913e-06 1.057e-05 1.351e-05 0.00% Castro::computeNewDt() 9 8.587e-06 1.007e-05 1.166e-05 0.00% Castro::create_source_corrector() 10 7.547e-06 8.925e-06 1.065e-05 0.00% Castro::retry_advance_ctu() 10 6.01e-06 7.317e-06 1.028e-05 0.00% Castro::post_init() 1 3.005e-06 4.46e-06 1.012e-05 0.00% Castro::FluxRegCrseInit 10 6.774e-06 8.057e-06 9.254e-06 0.00% Amr::initialInit() 1 1.337e-06 2.465e-06 8.607e-06 0.00% Amr::init() 1 1.977e-06 2.715e-06 6.714e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.865e-06 4.768e-06 6.529e-06 0.00% Amr::InitializeInit() 1 1.929e-06 2.574e-06 4.768e-06 0.00% Castro::computeInitialDt() 2 3.662e-06 4.269e-06 4.757e-06 0.00% Castro::post_regrid() 1 1.921e-06 2.913e-06 4.156e-06 0.00% Castro::FluxRegFineAdd() 10 1.824e-06 2.371e-06 2.994e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.15e-06 1.439e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.492 3.493 3.494 100.00% Amr::coarseTimeStep() 10 3.295 3.295 3.295 94.30% Amr::timeStep() 10 3.28 3.281 3.283 93.96% Castro::advance() 10 3.265 3.265 3.266 93.46% Castro::subcycle_advance_ctu() 10 3.187 3.191 3.211 91.90% Castro::do_advance_ctu() 10 3.187 3.191 3.211 91.90% Castro::construct_ctu_hydro_source() 10 2.423 2.428 2.433 69.62% Gravity::make_radial_gravity() 21 0.3241 0.3325 0.3481 9.96% AmrLevel::FillPatch() 41 0.1906 0.2105 0.2335 6.68% Gravity::get_new_grav_vector() 11 0.217 0.2182 0.2195 6.28% Castro::construct_old_gravity() 10 0.1953 0.2025 0.215 6.15% Gravity::get_old_grav_vector() 10 0.1947 0.2019 0.2144 6.14% FillPatchIterator::Initialize 41 0.1606 0.1791 0.211 6.04% Castro::construct_new_gravity() 10 0.194 0.1948 0.1959 5.61% Amr::init() 1 0.1836 0.1838 0.1838 5.26% FillPatchIterator::FillFromLevel0() 41 0.1137 0.1364 0.1763 5.05% FillPatchSingleLevel 41 0.1136 0.1363 0.1762 5.04% Castro::initialize_do_advance() 10 0.1604 0.1654 0.172 4.92% Amr::initialInit() 1 0.1695 0.1699 0.1701 4.87% check_for_negative_density() 10 0.02365 0.07268 0.1435 4.11% Amr::InitializeInit() 1 0.06065 0.1011 0.1429 4.09% Amr::defBaseLevel() 1 0.06064 0.1011 0.1429 4.09% FabArray::ParallelCopy() 41 0.07485 0.09853 0.1416 4.05% Castro::expand_state() 10 0.1048 0.1123 0.1259 3.60% Castro::initData() 1 0.04473 0.08464 0.1252 3.58% Castro::clean_state() 62 0.1135 0.1151 0.1167 3.34% Amr::FinalizeInit() 1 0.02722 0.06878 0.1091 3.12% FabArray::ParallelCopy_finish() 41 0.03437 0.05867 0.1079 3.09% Castro::do_old_sources() 10 0.09229 0.1015 0.1075 3.08% Castro::estTimeStep() 21 0.02237 0.069 0.1056 3.02% amrex::Copy() 193 0.06072 0.08184 0.09992 2.86% Castro::computeInitialDt() 2 0.002274 0.04399 0.08439 2.42% FabArray::setVal() 143 0.05355 0.06942 0.0757 2.17% Castro::initialize_advance() 10 0.05021 0.07079 0.07501 2.15% Castro::computeTemp() 63 0.06564 0.06717 0.06888 1.97% Castro::do_new_sources() 10 0.05978 0.06352 0.06765 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04682 0.04806 0.04926 1.41% Castro::reset_internal_energy(Fab) 1008 0.04654 0.04776 0.04897 1.40% Castro::normalize_species() 62 0.04079 0.04131 0.0424 1.21% FabArray::ParallelCopy_nowait() 41 0.03362 0.03979 0.04194 1.20% StateDataPhysBCFunct::() 41 0.03453 0.03766 0.04024 1.15% StateData::FillBoundary(geom) 41 0.03436 0.03753 0.04014 1.15% Castro::construct_new_source() 50 0.02703 0.03013 0.03197 0.91% Gravity::interpolate_monopole_grav() 21 0.02802 0.02852 0.03052 0.87% Castro::construct_new_gravity_source() 10 0.02139 0.02367 0.02527 0.72% Castro::post_init() 1 0.02416 0.02444 0.02462 0.70% Amr::writePlotFile() 2 0.02376 0.02396 0.02428 0.69% Castro::finalize_do_advance() 10 0.01187 0.01668 0.02079 0.60% Castro::post_timestep() 10 0.01527 0.01586 0.01715 0.49% VisMF::Write(FabArray) 2 0.01156 0.01269 0.01506 0.43% Castro::apply_source_to_state() 20 0.01069 0.0129 0.01392 0.40% FabArray::Saxpy() 20 0.01065 0.01285 0.01387 0.40% FabArray::setDomainBndry() 41 0.008541 0.01129 0.01297 0.37% Castro::Castro() 1 0.009945 0.01071 0.01155 0.33% Castro::check_for_nan() 20 0.009631 0.01042 0.01153 0.33% MultiFab::contains_nan() 20 0.009611 0.0104 0.01151 0.33% Castro::construct_old_source() 50 0.006558 0.009592 0.01057 0.30% Castro::construct_old_gravity_source() 10 0.006514 0.00952 0.0105 0.30% Castro::computeNewDt() 9 0.009237 0.009248 0.009259 0.26% Castro::enforce_min_density() 62 0.007095 0.007439 0.00795 0.23% Castro::initMFs() 1 0.00623 0.006712 0.007515 0.22% AmrLevel::AmrLevel(dm) 1 0.005135 0.005513 0.005845 0.17% StateData::define() 4 0.005107 0.005489 0.005818 0.17% Castro::swap_state_time_levels() 10 0.003043 0.004045 0.004384 0.13% Castro::finalize_advance() 10 0.003201 0.003423 0.003675 0.11% Castro::buildMetrics() 1 0.001614 0.0017 0.001834 0.05% Castro::post_regrid() 1 0.001376 0.001589 0.001721 0.05% Amr::InitAmr() 1 0.000275 0.0003447 0.0005184 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.358e-05 0.0001946 0.0002648 0.01% DistributionMapping::LeastUsedCPUs() 1 7.25e-06 0.0001887 0.000257 0.01% Castro::enforce_consistent_e() 1 8.068e-05 9.216e-05 0.0001187 0.00% FabArrayBase::getCPC() 41 6.709e-05 7.608e-05 8.987e-05 0.00% Amr::writeSmallPlotFile() 1 3.245e-05 4.627e-05 6.116e-05 0.00% Castro::enforce_speed_limit() 62 2.609e-05 2.989e-05 3.259e-05 0.00% FabArrayBase::CPC::define() 2 2.201e-05 2.407e-05 2.806e-05 0.00% Amr::initSubcycle() 1 9.248e-06 1.187e-05 2.532e-05 0.00% Gravity::swapTimeLevels() 10 8.307e-06 1.383e-05 1.689e-05 0.00% Gravity::set_mass_offset() 10 7.913e-06 1.057e-05 1.351e-05 0.00% Castro::create_source_corrector() 10 7.547e-06 8.925e-06 1.065e-05 0.00% Castro::retry_advance_ctu() 10 6.01e-06 7.317e-06 1.028e-05 0.00% Castro::FluxRegCrseInit 10 6.774e-06 8.057e-06 9.254e-06 0.00% Castro::FluxRegFineAdd() 10 1.824e-06 2.371e-06 2.994e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.15e-06 1.439e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-22-gb2052f2d2e5c) finalized