MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-23-g2e99628138df) initialized Starting run at 18:41:21 UTC on 2023-09-23. Successfully read inputs file ... Castro git describe: 23.09-21-gf2ad04a03 AMReX git describe: 23.09-23-g2e9962813 Microphysics git describe: 23.09-13-gd55561ce reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014465908 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367346629 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.334656835 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.390661875 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326616855 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350628181 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338054737 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310223175 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31101786 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31273604 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31407791 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009978351 seconds Ending run at 18:41:25 UTC on 2023-09-23. Run time = 3.560384719 Run time without initialization = 3.371583554 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.559 ... 3.56 ... 3.56 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3074 2.3395 2.3743 66.68% Gravity::make_radial_gravity() 21 0.321 0.3277 0.3398 9.54% check_for_negative_density() 10 0.07993 0.1158 0.1473 4.14% Castro::estTimeStep() 21 0.02646 0.07724 0.1235 3.47% Castro::initData() 1 0.0387 0.08 0.1214 3.41% FabArray::setVal() 143 0.06223 0.07227 0.08504 2.39% amrex::Copy() 193 0.06458 0.07607 0.08456 2.37% FabArray::ParallelCopy_finish() 41 0.03518 0.05731 0.08437 2.37% Castro::reset_internal_energy(Fab) 1008 0.04636 0.04847 0.05127 1.44% Castro::normalize_species() 62 0.0403 0.04165 0.04367 1.23% FabArray::ParallelCopy_nowait() 41 0.03429 0.03946 0.04162 1.17% StateData::FillBoundary(geom) 41 0.03466 0.03769 0.04033 1.13% FillPatchIterator::Initialize 41 0.02716 0.03183 0.03556 1.00% Gravity::interpolate_monopole_grav() 21 0.02779 0.02834 0.03061 0.86% Castro::construct_new_gravity_source() 10 0.02202 0.02491 0.02885 0.81% Castro::initialize_do_advance() 10 0.01135 0.01694 0.02113 0.59% Castro::computeTemp() 63 0.01813 0.0196 0.0205 0.58% VisMF::Write(FabArray) 2 0.01216 0.01294 0.01569 0.44% Castro::initialize_advance() 10 0.0084 0.0112 0.01423 0.40% FabArray::Saxpy() 20 0.0104 0.01275 0.01339 0.38% FabArray::setDomainBndry() 41 0.008872 0.01092 0.01206 0.34% MultiFab::contains_nan() 20 0.009873 0.01069 0.0119 0.33% Amr::writePlotFile() 2 0.00619 0.009048 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006857 0.00944 0.009955 0.28% Castro::enforce_min_density() 62 0.006992 0.007348 0.00787 0.22% Castro::initMFs() 1 0.006191 0.006737 0.007743 0.22% Castro::construct_new_source() 50 0.005699 0.006142 0.006319 0.18% StateData::define() 4 0.005152 0.005429 0.005837 0.16% Gravity::get_new_grav_vector() 11 0.002763 0.00359 0.004884 0.14% main() 1 0.003548 0.004416 0.004833 0.14% Castro::swap_state_time_levels() 10 0.003117 0.004095 0.004825 0.14% Amr::coarseTimeStep() 10 0.001345 0.002358 0.003405 0.10% Gravity::get_old_grav_vector() 10 0.001518 0.001902 0.002291 0.06% Castro::buildMetrics() 1 0.001442 0.001546 0.00171 0.05% Castro::finalize_do_advance() 10 0.0004995 0.00105 0.001274 0.04% AmrLevel::FillPatch() 41 0.0007391 0.0008709 0.0009693 0.03% Amr::InitAmr() 1 0.0002532 0.0003134 0.0004657 0.01% Amr::timeStep() 10 0.000168 0.0002288 0.0004295 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002881 0.0002979 0.0003127 0.01% DistributionMapping::LeastUsedCPUs() 1 5.924e-06 0.0001915 0.000256 0.01% Castro::do_advance_ctu() 10 0.0001419 0.0001733 0.0002328 0.01% Castro::clean_state() 62 0.0001327 0.0001548 0.0002015 0.01% FillPatchIterator::FillFromLevel0() 41 0.000106 0.00012 0.0001541 0.00% Castro::finalize_advance() 10 8.141e-05 9.637e-05 0.0001098 0.00% Castro::do_old_sources() 10 8.214e-05 9.305e-05 0.0001036 0.00% StateDataPhysBCFunct::() 41 8.952e-05 9.75e-05 0.0001035 0.00% Castro::enforce_consistent_e() 1 7.486e-05 8.487e-05 9.357e-05 0.00% Castro::Castro() 1 5.87e-05 6.615e-05 8.399e-05 0.00% FillPatchSingleLevel 41 6.639e-05 7.034e-05 8.335e-05 0.00% FabArray::ParallelCopy() 41 6.811e-05 7.281e-05 8.327e-05 0.00% Amr::FinalizeInit() 1 3.619e-06 1.429e-05 8.11e-05 0.00% Castro::construct_old_source() 50 5.755e-05 6.996e-05 7.964e-05 0.00% Castro::do_new_sources() 10 5.558e-05 6.377e-05 7.386e-05 0.00% FabArrayBase::getCPC() 41 4.9e-05 5.501e-05 6.226e-05 0.00% Castro::subcycle_advance_ctu() 10 4.209e-05 5.354e-05 6.209e-05 0.00% Amr::writeSmallPlotFile() 1 3.186e-05 5.095e-05 6.197e-05 0.00% Castro::construct_new_gravity() 10 3.416e-05 4.183e-05 5.929e-05 0.00% Castro::advance() 10 3.945e-05 4.772e-05 5.49e-05 0.00% Castro::construct_old_gravity() 10 3.849e-05 4.641e-05 5.434e-05 0.00% Castro::apply_source_to_state() 20 4.19e-05 4.694e-05 5.345e-05 0.00% Amr::defBaseLevel() 1 2.835e-05 3.82e-05 5.05e-05 0.00% FabArrayBase::CPC::define() 2 2.023e-05 2.618e-05 3.556e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.944e-05 2.577e-05 3.386e-05 0.00% Castro::enforce_speed_limit() 62 2.744e-05 3.009e-05 3.356e-05 0.00% Castro::expand_state() 10 2.002e-05 2.435e-05 2.735e-05 0.00% Amr::initSubcycle() 1 9.327e-06 1.189e-05 2.554e-05 0.00% Castro::check_for_nan() 20 1.861e-05 2.034e-05 2.222e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.549e-05 2.192e-05 0.00% Gravity::swapTimeLevels() 10 9.706e-06 1.181e-05 1.378e-05 0.00% Gravity::set_mass_offset() 10 8.694e-06 1.091e-05 1.29e-05 0.00% Castro::computeNewDt() 9 8.74e-06 1.073e-05 1.23e-05 0.00% Castro::create_source_corrector() 10 5.807e-06 8.481e-06 1.023e-05 0.00% Castro::FluxRegCrseInit 10 5.556e-06 7.682e-06 9.126e-06 0.00% Castro::retry_advance_ctu() 10 5.93e-06 6.753e-06 8.155e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.691e-06 4.476e-06 5.487e-06 0.00% Castro::computeInitialDt() 2 3.773e-06 4.502e-06 5.424e-06 0.00% Amr::InitializeInit() 1 1.891e-06 2.499e-06 4.429e-06 0.00% Castro::post_regrid() 1 1.625e-06 2.95e-06 4.229e-06 0.00% Castro::post_init() 1 3.039e-06 3.51e-06 3.905e-06 0.00% Amr::init() 1 1.802e-06 2.287e-06 3.278e-06 0.00% Castro::FluxRegFineAdd() 10 1.828e-06 2.12e-06 2.456e-06 0.00% Amr::initialInit() 1 1.129e-06 1.506e-06 1.741e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.133e-06 1.394e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.559 3.56 3.56 100.00% Amr::coarseTimeStep() 10 3.357 3.357 3.357 94.28% Amr::timeStep() 10 3.343 3.344 3.345 93.95% Castro::advance() 10 3.327 3.328 3.329 93.49% Castro::subcycle_advance_ctu() 10 3.241 3.249 3.255 91.42% Castro::do_advance_ctu() 10 3.241 3.249 3.255 91.41% Castro::construct_ctu_hydro_source() 10 2.475 2.477 2.482 69.70% Gravity::make_radial_gravity() 21 0.3389 0.3442 0.3538 9.94% Gravity::get_new_grav_vector() 11 0.2272 0.232 0.2335 6.56% AmrLevel::FillPatch() 41 0.1891 0.2071 0.2204 6.19% Castro::construct_new_gravity() 10 0.2003 0.2043 0.2058 5.78% Castro::construct_old_gravity() 10 0.1929 0.1975 0.2045 5.74% Gravity::get_old_grav_vector() 10 0.1922 0.1968 0.2039 5.73% FillPatchIterator::Initialize 41 0.1595 0.1777 0.1928 5.42% Amr::init() 1 0.1882 0.1883 0.1884 5.29% Castro::initialize_do_advance() 10 0.1635 0.1726 0.1824 5.12% Amr::initialInit() 1 0.1734 0.1737 0.174 4.89% FillPatchIterator::FillFromLevel0() 41 0.1125 0.1349 0.1568 4.40% FillPatchSingleLevel 41 0.1124 0.1348 0.1567 4.40% check_for_negative_density() 10 0.07993 0.1158 0.1473 4.14% Amr::InitializeInit() 1 0.05822 0.1002 0.1424 4.00% Amr::defBaseLevel() 1 0.05822 0.1002 0.1424 4.00% Castro::expand_state() 10 0.1053 0.1189 0.1295 3.64% Castro::initData() 1 0.04275 0.08395 0.125 3.51% Castro::estTimeStep() 21 0.02646 0.07724 0.1235 3.47% Castro::clean_state() 62 0.1129 0.1166 0.1214 3.41% FabArray::ParallelCopy() 41 0.07513 0.09693 0.1188 3.34% Amr::FinalizeInit() 1 0.03129 0.07355 0.1153 3.24% Castro::do_old_sources() 10 0.0879 0.09192 0.09437 2.65% Castro::computeInitialDt() 2 0.002279 0.04456 0.08657 2.43% FabArray::setVal() 143 0.06223 0.07227 0.08504 2.39% amrex::Copy() 193 0.06458 0.07607 0.08456 2.37% FabArray::ParallelCopy_finish() 41 0.03518 0.05731 0.08437 2.37% Castro::initialize_advance() 10 0.06946 0.07493 0.08297 2.33% Castro::do_new_sources() 10 0.05916 0.06594 0.07675 2.16% Castro::computeTemp() 63 0.06562 0.06837 0.07207 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04667 0.04877 0.05157 1.45% Castro::reset_internal_energy(Fab) 1008 0.04636 0.04847 0.05127 1.44% Castro::normalize_species() 62 0.0403 0.04165 0.04367 1.23% FabArray::ParallelCopy_nowait() 41 0.03438 0.03954 0.0417 1.17% StateDataPhysBCFunct::() 41 0.03475 0.03778 0.04043 1.14% StateData::FillBoundary(geom) 41 0.03466 0.03769 0.04033 1.13% Castro::construct_new_source() 50 0.02816 0.03106 0.03485 0.98% Castro::finalize_do_advance() 10 0.01285 0.02451 0.03163 0.89% Gravity::interpolate_monopole_grav() 21 0.02779 0.02834 0.03061 0.86% Castro::construct_new_gravity_source() 10 0.02202 0.02491 0.02885 0.81% Castro::post_init() 1 0.02842 0.02862 0.02877 0.81% Amr::writePlotFile() 2 0.02443 0.02467 0.02491 0.70% Castro::post_timestep() 10 0.01578 0.01596 0.01621 0.46% VisMF::Write(FabArray) 2 0.01216 0.01294 0.01569 0.44% Castro::apply_source_to_state() 20 0.01044 0.0128 0.01344 0.38% FabArray::Saxpy() 20 0.0104 0.01275 0.01339 0.38% FabArray::setDomainBndry() 41 0.008872 0.01092 0.01206 0.34% Castro::check_for_nan() 20 0.009893 0.01071 0.01192 0.33% MultiFab::contains_nan() 20 0.009873 0.01069 0.0119 0.33% Castro::Castro() 1 0.009923 0.01053 0.01146 0.32% Castro::construct_old_source() 50 0.006915 0.00951 0.01003 0.28% Castro::construct_old_gravity_source() 10 0.006857 0.00944 0.009955 0.28% Castro::computeNewDt() 9 0.009222 0.00923 0.009235 0.26% Castro::enforce_min_density() 62 0.006992 0.007348 0.00787 0.22% Castro::initMFs() 1 0.006191 0.006737 0.007743 0.22% AmrLevel::AmrLevel(dm) 1 0.005182 0.005455 0.005859 0.16% StateData::define() 4 0.005152 0.005429 0.005837 0.16% Castro::swap_state_time_levels() 10 0.003117 0.004095 0.004825 0.14% Castro::finalize_advance() 10 0.002896 0.003711 0.0045 0.13% Castro::post_regrid() 1 0.001543 0.001618 0.001886 0.05% Castro::buildMetrics() 1 0.001558 0.001674 0.001858 0.05% Amr::InitAmr() 1 0.0002627 0.0003252 0.0004913 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.208e-05 0.0001971 0.0002623 0.01% DistributionMapping::LeastUsedCPUs() 1 5.924e-06 0.0001915 0.000256 0.01% Castro::enforce_consistent_e() 1 7.486e-05 8.487e-05 9.357e-05 0.00% FabArrayBase::getCPC() 41 6.944e-05 8.12e-05 9.005e-05 0.00% Amr::writeSmallPlotFile() 1 3.186e-05 5.095e-05 6.197e-05 0.00% FabArrayBase::CPC::define() 2 2.023e-05 2.618e-05 3.556e-05 0.00% Castro::enforce_speed_limit() 62 2.744e-05 3.009e-05 3.356e-05 0.00% Amr::initSubcycle() 1 9.327e-06 1.189e-05 2.554e-05 0.00% Gravity::swapTimeLevels() 10 9.706e-06 1.181e-05 1.378e-05 0.00% Gravity::set_mass_offset() 10 8.694e-06 1.091e-05 1.29e-05 0.00% Castro::create_source_corrector() 10 5.807e-06 8.481e-06 1.023e-05 0.00% Castro::FluxRegCrseInit 10 5.556e-06 7.682e-06 9.126e-06 0.00% Castro::retry_advance_ctu() 10 5.93e-06 6.753e-06 8.155e-06 0.00% Castro::FluxRegFineAdd() 10 1.828e-06 2.12e-06 2.456e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.133e-06 1.394e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-23-g2e99628138df) finalized