MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-23-g2e99628138df) initialized Starting run at 05:24:45 UTC on 2023-09-25. Successfully read inputs file ... Castro git describe: 23.09-31-g025c1f156 AMReX git describe: 23.09-23-g2e9962813 Microphysics git describe: 23.09-14-g9c08d809 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015110575 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357485054 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340950114 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331756437 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33724202 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.334217339 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36776375 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318159657 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314061305 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315003231 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315275082 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009786477 seconds Ending run at 05:24:48 UTC on 2023-09-25. Run time = 3.533404753 Run time without initialization = 3.347199865 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.532 ... 3.533 ... 3.533 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2785 2.3479 2.3868 67.55% Gravity::make_radial_gravity() 21 0.3212 0.3348 0.3511 9.94% check_for_negative_density() 10 0.03757 0.07872 0.1523 4.31% Castro::initData() 1 0.04551 0.0818 0.1212 3.43% Castro::estTimeStep() 21 0.0249 0.06836 0.1072 3.03% amrex::Copy() 193 0.06639 0.07931 0.08931 2.53% FabArray::setVal() 143 0.06852 0.07314 0.08042 2.28% FabArray::ParallelCopy_finish() 41 0.03498 0.05016 0.07737 2.19% Castro::reset_internal_energy(Fab) 1008 0.04694 0.04952 0.05425 1.54% Castro::normalize_species() 62 0.04117 0.04169 0.04202 1.19% FabArray::ParallelCopy_nowait() 41 0.03295 0.03981 0.04192 1.19% StateData::FillBoundary(geom) 41 0.03375 0.03709 0.03973 1.12% FillPatchIterator::Initialize 41 0.02657 0.0316 0.03436 0.97% Gravity::interpolate_monopole_grav() 21 0.02808 0.02868 0.02927 0.83% Castro::construct_new_gravity_source() 10 0.02127 0.02363 0.02576 0.73% Castro::computeTemp() 63 0.01945 0.02024 0.0217 0.61% Castro::initialize_do_advance() 10 0.0113 0.01699 0.01812 0.51% Castro::initialize_advance() 10 0.01048 0.01312 0.01604 0.45% VisMF::Write(FabArray) 2 0.01261 0.01341 0.01587 0.45% MultiFab::contains_nan() 20 0.01086 0.01255 0.01526 0.43% FabArray::Saxpy() 20 0.01061 0.01273 0.01369 0.39% FabArray::setDomainBndry() 41 0.008645 0.01118 0.01308 0.37% Castro::construct_old_gravity_source() 10 0.006549 0.009489 0.01045 0.30% Amr::writePlotFile() 2 0.006277 0.008406 0.008789 0.25% Castro::enforce_min_density() 62 0.007021 0.007505 0.007866 0.22% Castro::initMFs() 1 0.006243 0.006732 0.007288 0.21% Castro::construct_new_source() 50 0.005587 0.00647 0.006859 0.19% StateData::define() 4 0.005254 0.00557 0.00589 0.17% main() 1 0.003418 0.004147 0.004652 0.13% Castro::swap_state_time_levels() 10 0.003157 0.004121 0.004403 0.12% Gravity::get_old_grav_vector() 10 0.001532 0.002208 0.004239 0.12% Gravity::get_new_grav_vector() 11 0.002829 0.00354 0.003905 0.11% Amr::coarseTimeStep() 10 0.001424 0.001844 0.002444 0.07% Castro::buildMetrics() 1 0.001503 0.001591 0.001686 0.05% Castro::finalize_do_advance() 10 0.0004464 0.001176 0.00152 0.04% AmrLevel::FillPatch() 41 0.0007099 0.0009324 0.001091 0.03% Amr::InitAmr() 1 0.0002652 0.0003037 0.0004467 0.01% Amr::timeStep() 10 0.0001875 0.0002421 0.000407 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.0003142 0.000389 0.01% Castro::do_advance_ctu() 10 0.00014 0.0001735 0.0002509 0.01% Castro::clean_state() 62 0.0001425 0.0001605 0.0001868 0.01% DistributionMapping::LeastUsedCPUs() 1 7.673e-06 0.0001488 0.0001827 0.01% FillPatchIterator::FillFromLevel0() 41 9.67e-05 0.0001109 0.0001215 0.00% StateDataPhysBCFunct::() 41 9.393e-05 0.0001014 0.0001155 0.00% Castro::do_old_sources() 10 7.39e-05 9.335e-05 0.0001139 0.00% Castro::finalize_advance() 10 8.73e-05 9.986e-05 0.0001127 0.00% Castro::Castro() 1 6.077e-05 7.856e-05 0.0001039 0.00% Castro::enforce_consistent_e() 1 7.772e-05 8.779e-05 9.568e-05 0.00% Amr::writeSmallPlotFile() 1 2.964e-05 5.141e-05 9.555e-05 0.00% Castro::construct_old_source() 50 5.249e-05 7.411e-05 9.035e-05 0.00% FabArray::ParallelCopy() 41 6.834e-05 7.372e-05 7.945e-05 0.00% FillPatchSingleLevel 41 6.172e-05 6.742e-05 7.701e-05 0.00% Amr::FinalizeInit() 1 3.922e-06 1.406e-05 7.5e-05 0.00% Castro::do_new_sources() 10 5.174e-05 6.451e-05 7.426e-05 0.00% Castro::construct_old_gravity() 10 4.029e-05 5.522e-05 6.878e-05 0.00% FabArrayBase::getCPC() 41 4.594e-05 5.709e-05 6.856e-05 0.00% Castro::apply_source_to_state() 20 4.097e-05 4.875e-05 6.04e-05 0.00% Castro::subcycle_advance_ctu() 10 4.163e-05 5.216e-05 5.919e-05 0.00% Castro::advance() 10 3.942e-05 4.645e-05 5.158e-05 0.00% Castro::construct_new_gravity() 10 3.629e-05 4.069e-05 4.68e-05 0.00% Castro::check_for_nan() 20 2.308e-05 2.882e-05 4.373e-05 0.00% Amr::defBaseLevel() 1 2.283e-05 3.025e-05 4.025e-05 0.00% Castro::enforce_speed_limit() 62 2.791e-05 3.154e-05 3.79e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.345e-05 2.768e-05 3.768e-05 0.00% Castro::post_timestep() 10 1.518e-05 1.822e-05 2.865e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.446e-05 2.836e-05 0.00% Castro::expand_state() 10 2.119e-05 2.312e-05 2.729e-05 0.00% Gravity::swapTimeLevels() 10 1.339e-05 1.644e-05 2.261e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.14e-06 8.322e-06 1.471e-05 0.00% Castro::computeNewDt() 9 9.518e-06 1.117e-05 1.269e-05 0.00% Gravity::set_mass_offset() 10 9.549e-06 1.137e-05 1.239e-05 0.00% Amr::initSubcycle() 1 8.662e-06 9.515e-06 1.018e-05 0.00% Amr::initialInit() 1 1.254e-06 3.489e-06 9.415e-06 0.00% Castro::create_source_corrector() 10 6.218e-06 8.022e-06 9.361e-06 0.00% Castro::FluxRegCrseInit 10 6.635e-06 7.622e-06 8.959e-06 0.00% Castro::retry_advance_ctu() 10 6.698e-06 7.387e-06 8.326e-06 0.00% Castro::computeInitialDt() 2 3.608e-06 4.431e-06 5.165e-06 0.00% Amr::InitializeInit() 1 1.987e-06 2.581e-06 5.145e-06 0.00% Castro::post_regrid() 1 1.746e-06 3.055e-06 4.108e-06 0.00% Castro::post_init() 1 2.995e-06 3.354e-06 3.714e-06 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.349e-06 2.992e-06 0.00% Amr::init() 1 1.712e-06 2.293e-06 2.819e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.256e-06 1.597e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.532 3.533 3.533 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 94.32% Amr::timeStep() 10 3.32 3.32 3.321 93.98% Castro::advance() 10 3.303 3.304 3.304 93.52% Castro::subcycle_advance_ctu() 10 3.22 3.224 3.226 91.29% Castro::do_advance_ctu() 10 3.22 3.224 3.226 91.29% Castro::construct_ctu_hydro_source() 10 2.444 2.448 2.452 69.38% Gravity::make_radial_gravity() 21 0.3372 0.3516 0.3651 10.33% Castro::construct_old_gravity() 10 0.2051 0.2157 0.2263 6.40% Gravity::get_old_grav_vector() 10 0.204 0.215 0.2256 6.39% Gravity::get_new_grav_vector() 11 0.2188 0.2207 0.2221 6.28% AmrLevel::FillPatch() 41 0.1795 0.2003 0.2122 6.00% Castro::construct_new_gravity() 10 0.1954 0.1961 0.197 5.58% Amr::init() 1 0.1856 0.1858 0.1858 5.26% FillPatchIterator::Initialize 41 0.1522 0.1703 0.182 5.15% Castro::initialize_do_advance() 10 0.1557 0.1667 0.1752 4.96% Amr::initialInit() 1 0.1703 0.1708 0.1709 4.84% check_for_negative_density() 10 0.03757 0.07872 0.1523 4.31% FillPatchIterator::FillFromLevel0() 41 0.1145 0.1275 0.1468 4.16% FillPatchSingleLevel 41 0.1144 0.1274 0.1467 4.15% Amr::InitializeInit() 1 0.06646 0.1024 0.1425 4.03% Amr::defBaseLevel() 1 0.06646 0.1024 0.1425 4.03% Castro::initData() 1 0.04918 0.08592 0.1251 3.54% Castro::clean_state() 62 0.1142 0.1185 0.1246 3.53% Castro::expand_state() 10 0.1006 0.1094 0.1163 3.29% FabArray::ParallelCopy() 41 0.07645 0.09012 0.1105 3.13% Castro::estTimeStep() 21 0.0249 0.06836 0.1072 3.03% Amr::FinalizeInit() 1 0.02834 0.06831 0.1039 2.94% Castro::do_old_sources() 10 0.09173 0.09886 0.1037 2.93% amrex::Copy() 193 0.06639 0.07931 0.08931 2.53% Castro::initialize_advance() 10 0.07526 0.07695 0.08053 2.28% FabArray::setVal() 143 0.06852 0.07314 0.08042 2.28% Castro::computeInitialDt() 2 0.002187 0.04229 0.07813 2.21% FabArray::ParallelCopy_finish() 41 0.03498 0.05016 0.07737 2.19% Castro::computeTemp() 63 0.06695 0.07008 0.07627 2.16% Castro::do_new_sources() 10 0.05951 0.06365 0.06873 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04725 0.04983 0.05464 1.55% Castro::reset_internal_energy(Fab) 1008 0.04694 0.04952 0.05425 1.54% Castro::normalize_species() 62 0.04117 0.04169 0.04202 1.19% FabArray::ParallelCopy_nowait() 41 0.03304 0.03989 0.04198 1.19% StateDataPhysBCFunct::() 41 0.03386 0.03719 0.03984 1.13% StateData::FillBoundary(geom) 41 0.03375 0.03709 0.03973 1.12% Castro::construct_new_source() 50 0.02685 0.0301 0.03257 0.92% Gravity::interpolate_monopole_grav() 21 0.02808 0.02868 0.02927 0.83% Castro::construct_new_gravity_source() 10 0.02127 0.02363 0.02576 0.73% Castro::post_init() 1 0.02518 0.02547 0.02565 0.73% Amr::writePlotFile() 2 0.02474 0.02487 0.02516 0.71% Castro::finalize_do_advance() 10 0.01268 0.01776 0.02145 0.61% Castro::post_timestep() 10 0.01595 0.01611 0.01652 0.47% VisMF::Write(FabArray) 2 0.01261 0.01341 0.01587 0.45% Castro::check_for_nan() 20 0.01089 0.01258 0.01529 0.43% MultiFab::contains_nan() 20 0.01086 0.01255 0.01526 0.43% Castro::apply_source_to_state() 20 0.01065 0.01278 0.01374 0.39% FabArray::Saxpy() 20 0.01061 0.01273 0.01369 0.39% FabArray::setDomainBndry() 41 0.008645 0.01118 0.01308 0.37% Castro::Castro() 1 0.009906 0.01074 0.01148 0.32% Castro::construct_old_source() 50 0.006602 0.009563 0.01054 0.30% Castro::construct_old_gravity_source() 10 0.006549 0.009489 0.01045 0.30% Castro::computeNewDt() 9 0.009493 0.009507 0.009525 0.27% Castro::enforce_min_density() 62 0.007021 0.007505 0.007866 0.22% Castro::initMFs() 1 0.006243 0.006732 0.007288 0.21% AmrLevel::AmrLevel(dm) 1 0.005278 0.005597 0.005927 0.17% StateData::define() 4 0.005254 0.00557 0.00589 0.17% Castro::swap_state_time_levels() 10 0.003157 0.004121 0.004403 0.12% Castro::finalize_advance() 10 0.003066 0.003271 0.003468 0.10% Castro::buildMetrics() 1 0.001635 0.001736 0.001844 0.05% Castro::post_regrid() 1 0.001604 0.001669 0.001744 0.05% Amr::InitAmr() 1 0.0002744 0.0003132 0.0004568 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.313e-05 0.0001583 0.0001975 0.01% DistributionMapping::LeastUsedCPUs() 1 7.673e-06 0.0001488 0.0001827 0.01% FabArrayBase::getCPC() 41 6.862e-05 8.154e-05 9.572e-05 0.00% Castro::enforce_consistent_e() 1 7.772e-05 8.779e-05 9.568e-05 0.00% Amr::writeSmallPlotFile() 1 2.964e-05 5.141e-05 9.555e-05 0.00% Castro::enforce_speed_limit() 62 2.791e-05 3.154e-05 3.79e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.446e-05 2.836e-05 0.00% Gravity::swapTimeLevels() 10 1.339e-05 1.644e-05 2.261e-05 0.00% Gravity::set_mass_offset() 10 9.549e-06 1.137e-05 1.239e-05 0.00% Amr::initSubcycle() 1 8.662e-06 9.515e-06 1.018e-05 0.00% Castro::create_source_corrector() 10 6.218e-06 8.022e-06 9.361e-06 0.00% Castro::FluxRegCrseInit 10 6.635e-06 7.622e-06 8.959e-06 0.00% Castro::retry_advance_ctu() 10 6.698e-06 7.387e-06 8.326e-06 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.349e-06 2.992e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.256e-06 1.597e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-23-g2e99628138df) finalized