MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-24-gf08b40b34bd4) initialized Starting run at 05:24:25 UTC on 2023-09-26. Successfully read inputs file ... Castro git describe: 23.09-34-g7561a65ab AMReX git describe: 23.09-24-gf08b40b34 Microphysics git describe: 23.09-14-g9c08d809 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017359168 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363809139 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337510394 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332922771 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.383970265 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347555705 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337097698 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308889755 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308980988 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309774844 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309551637 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009809365 seconds Ending run at 05:24:29 UTC on 2023-09-26. Run time = 3.54877758 Run time without initialization = 3.354871371 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.548 ... 3.548 ... 3.549 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2489 2.3410 2.4238 68.30% Gravity::make_radial_gravity() 21 0.3258 0.3387 0.3531 9.95% check_for_negative_density() 10 0.01929 0.1053 0.1988 5.60% Castro::estTimeStep() 21 0.02413 0.05931 0.1141 3.21% Castro::initData() 1 0.03835 0.08506 0.1132 3.19% FabArray::setVal() 143 0.0634 0.07186 0.08447 2.38% amrex::Copy() 193 0.06571 0.07509 0.0825 2.32% FabArray::ParallelCopy_finish() 41 0.03618 0.05174 0.07354 2.07% Castro::reset_internal_energy(Fab) 1008 0.04733 0.04919 0.05158 1.45% Castro::normalize_species() 62 0.04054 0.04184 0.04358 1.23% FabArray::ParallelCopy_nowait() 41 0.03313 0.0395 0.04163 1.17% StateData::FillBoundary(geom) 41 0.03377 0.03699 0.04101 1.16% FillPatchIterator::Initialize 41 0.0274 0.03156 0.03456 0.97% Gravity::interpolate_monopole_grav() 21 0.02835 0.0287 0.02937 0.83% Castro::construct_new_gravity_source() 10 0.02208 0.02455 0.02818 0.79% Castro::computeTemp() 63 0.0197 0.02048 0.02263 0.64% Castro::initialize_do_advance() 10 0.01196 0.01678 0.02088 0.59% VisMF::Write(FabArray) 2 0.013 0.01378 0.01699 0.48% Castro::initialize_advance() 10 0.008342 0.01112 0.014 0.39% MultiFab::contains_nan() 20 0.01068 0.01178 0.01383 0.39% Amr::writePlotFile() 2 0.008019 0.01203 0.01359 0.38% FabArray::Saxpy() 20 0.01063 0.01262 0.01321 0.37% FabArray::setDomainBndry() 41 0.008595 0.01106 0.01256 0.35% Castro::initMFs() 1 0.00605 0.007108 0.01021 0.29% Castro::construct_old_gravity_source() 10 0.006941 0.009388 0.009875 0.28% Castro::enforce_min_density() 62 0.007026 0.007409 0.008078 0.23% StateData::define() 4 0.005063 0.005773 0.007828 0.22% Castro::construct_new_source() 50 0.005661 0.006201 0.006392 0.18% Castro::swap_state_time_levels() 10 0.003744 0.004302 0.005988 0.17% Gravity::get_new_grav_vector() 11 0.002852 0.003744 0.005292 0.15% main() 1 0.003317 0.003785 0.004274 0.12% Amr::coarseTimeStep() 10 0.001032 0.002182 0.003074 0.09% Gravity::get_old_grav_vector() 10 0.001489 0.001884 0.002221 0.06% Castro::buildMetrics() 1 0.001424 0.001649 0.002214 0.06% Castro::finalize_do_advance() 10 0.0004863 0.001053 0.001304 0.04% AmrLevel::FillPatch() 41 0.0007357 0.0008035 0.0008576 0.02% Amr::InitAmr() 1 0.0002668 0.0003504 0.0006235 0.02% Amr::timeStep() 10 0.0001898 0.000248 0.0004141 0.01% DistributionMapping::LeastUsedCPUs() 1 8.076e-06 0.0003182 0.0004021 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002872 0.0003018 0.0003449 0.01% Castro::clean_state() 62 0.0001435 0.000172 0.0002273 0.01% Castro::do_advance_ctu() 10 0.0001506 0.0001842 0.0002127 0.01% Castro::enforce_consistent_e() 1 8.291e-05 9.926e-05 0.000142 0.00% Castro::do_old_sources() 10 8.492e-05 9.336e-05 0.0001235 0.00% Castro::finalize_advance() 10 7.917e-05 0.0001051 0.0001214 0.00% FillPatchIterator::FillFromLevel0() 41 9.867e-05 0.0001109 0.0001192 0.00% StateDataPhysBCFunct::() 41 9.668e-05 0.0001022 0.0001126 0.00% Castro::construct_old_source() 50 5.738e-05 7.116e-05 8.88e-05 0.00% Amr::FinalizeInit() 1 3.816e-06 1.534e-05 8.513e-05 0.00% FabArray::ParallelCopy() 41 6.472e-05 7.323e-05 7.991e-05 0.00% Castro::Castro() 1 6.226e-05 7.054e-05 7.89e-05 0.00% Castro::do_new_sources() 10 5.938e-05 6.573e-05 7.68e-05 0.00% FillPatchSingleLevel 41 6.312e-05 6.716e-05 7.118e-05 0.00% FabArrayBase::getCPC() 41 4.499e-05 5.519e-05 6.913e-05 0.00% Amr::writeSmallPlotFile() 1 3.196e-05 5.022e-05 6.404e-05 0.00% Castro::advance() 10 3.828e-05 4.734e-05 6.14e-05 0.00% Castro::construct_new_gravity() 10 3.524e-05 4.466e-05 5.758e-05 0.00% Castro::subcycle_advance_ctu() 10 3.975e-05 4.925e-05 5.361e-05 0.00% Castro::apply_source_to_state() 20 4.385e-05 4.837e-05 5.259e-05 0.00% Castro::construct_old_gravity() 10 4.79e-05 4.962e-05 5.096e-05 0.00% Castro::check_for_nan() 20 2.342e-05 2.862e-05 4.921e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.611e-05 2.483e-05 4.047e-05 0.00% Amr::defBaseLevel() 1 2.791e-05 3.224e-05 3.654e-05 0.00% Castro::enforce_speed_limit() 62 2.527e-05 2.882e-05 3.217e-05 0.00% FabArrayBase::CPC::define() 2 2.199e-05 2.623e-05 2.874e-05 0.00% Castro::expand_state() 10 2.008e-05 2.376e-05 2.73e-05 0.00% Castro::post_timestep() 10 1.23e-05 1.482e-05 1.797e-05 0.00% Amr::initSubcycle() 1 8.67e-06 1.066e-05 1.534e-05 0.00% Gravity::swapTimeLevels() 10 1.141e-05 1.324e-05 1.532e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.129e-05 1.293e-05 0.00% Castro::computeNewDt() 9 9.121e-06 1.1e-05 1.255e-05 0.00% Castro::post_init() 1 3.413e-06 5.44e-06 1.015e-05 0.00% Castro::create_source_corrector() 10 7.471e-06 8.554e-06 9.972e-06 0.00% Castro::retry_advance_ctu() 10 7.541e-06 8.123e-06 9.001e-06 0.00% Castro::FluxRegCrseInit 10 5.895e-06 7.331e-06 8.437e-06 0.00% Amr::init() 1 2.022e-06 3.289e-06 8.015e-06 0.00% Amr::initialInit() 1 1.508e-06 2.649e-06 7.521e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.54e-06 5.023e-06 6.883e-06 0.00% Amr::InitializeInit() 1 1.963e-06 2.653e-06 5.81e-06 0.00% Castro::computeInitialDt() 2 4.29e-06 4.64e-06 5.24e-06 0.00% Castro::post_regrid() 1 1.992e-06 3.44e-06 4.436e-06 0.00% Castro::FluxRegFineAdd() 10 2.15e-06 2.433e-06 2.765e-06 0.00% DistributionMapping::Distribute() 1 9.2e-07 1.207e-06 1.4e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.548 3.548 3.549 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.14% Amr::timeStep() 10 3.326 3.327 3.329 93.79% Castro::advance() 10 3.31 3.311 3.312 93.33% Castro::subcycle_advance_ctu() 10 3.224 3.233 3.239 91.27% Castro::do_advance_ctu() 10 3.224 3.233 3.239 91.27% Castro::construct_ctu_hydro_source() 10 2.465 2.469 2.474 69.72% Gravity::make_radial_gravity() 21 0.3418 0.3545 0.3675 10.36% Gravity::get_new_grav_vector() 11 0.2389 0.2421 0.2447 6.90% AmrLevel::FillPatch() 41 0.1794 0.2007 0.2164 6.10% Castro::construct_new_gravity() 10 0.2011 0.204 0.2066 5.82% Castro::construct_old_gravity() 10 0.1881 0.1956 0.2042 5.75% Gravity::get_old_grav_vector() 10 0.1875 0.195 0.2036 5.74% check_for_negative_density() 10 0.01929 0.1053 0.1988 5.60% Amr::init() 1 0.1931 0.1934 0.1935 5.45% FillPatchIterator::Initialize 41 0.1519 0.1713 0.1845 5.20% Castro::initialize_do_advance() 10 0.1556 0.1689 0.1805 5.09% Amr::initialInit() 1 0.1743 0.175 0.1755 4.95% FillPatchIterator::FillFromLevel0() 41 0.1137 0.1287 0.1428 4.02% FillPatchSingleLevel 41 0.1136 0.1285 0.1426 4.02% Amr::InitializeInit() 1 0.05798 0.1067 0.133 3.75% Amr::defBaseLevel() 1 0.05798 0.1067 0.133 3.75% Castro::expand_state() 10 0.09921 0.1149 0.1275 3.59% Castro::clean_state() 62 0.1146 0.1183 0.1226 3.45% Castro::initData() 1 0.0423 0.08939 0.1173 3.31% Amr::FinalizeInit() 1 0.04234 0.06832 0.1173 3.30% Castro::estTimeStep() 21 0.02413 0.05931 0.1141 3.21% FabArray::ParallelCopy() 41 0.07694 0.09139 0.1068 3.01% Castro::do_old_sources() 10 0.08788 0.09194 0.09601 2.71% FabArray::setVal() 143 0.0634 0.07186 0.08447 2.38% Castro::initialize_advance() 10 0.06849 0.07473 0.08367 2.36% amrex::Copy() 193 0.06571 0.07509 0.0825 2.32% Castro::computeInitialDt() 2 0.002849 0.02906 0.07788 2.19% Castro::do_new_sources() 10 0.05942 0.06532 0.07445 2.10% FabArray::ParallelCopy_finish() 41 0.03618 0.05174 0.07354 2.07% Castro::computeTemp() 63 0.06784 0.06997 0.07222 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04763 0.04949 0.05187 1.46% Castro::reset_internal_energy(Fab) 1008 0.04733 0.04919 0.05158 1.45% Castro::normalize_species() 62 0.04054 0.04184 0.04358 1.23% FabArray::ParallelCopy_nowait() 41 0.03323 0.03958 0.04172 1.18% StateDataPhysBCFunct::() 41 0.03388 0.03709 0.04111 1.16% StateData::FillBoundary(geom) 41 0.03377 0.03699 0.04101 1.16% Castro::post_init() 1 0.03857 0.03913 0.03971 1.12% Castro::construct_new_source() 50 0.02837 0.03076 0.03457 0.97% Gravity::interpolate_monopole_grav() 21 0.02835 0.0287 0.02937 0.83% Amr::writePlotFile() 2 0.02746 0.02826 0.02911 0.82% Castro::construct_new_gravity_source() 10 0.02208 0.02455 0.02818 0.79% Castro::finalize_do_advance() 10 0.01279 0.02182 0.02803 0.79% VisMF::Write(FabArray) 2 0.013 0.01378 0.01699 0.48% Castro::post_timestep() 10 0.01562 0.01603 0.01655 0.47% Castro::Castro() 1 0.01007 0.01117 0.0143 0.40% Castro::check_for_nan() 20 0.01071 0.0118 0.01388 0.39% MultiFab::contains_nan() 20 0.01068 0.01178 0.01383 0.39% Castro::apply_source_to_state() 20 0.01068 0.01267 0.01326 0.37% FabArray::Saxpy() 20 0.01063 0.01262 0.01321 0.37% FabArray::setDomainBndry() 41 0.008595 0.01106 0.01256 0.35% Castro::initMFs() 1 0.00605 0.007108 0.01021 0.29% Castro::construct_old_source() 50 0.006998 0.009459 0.00995 0.28% Castro::construct_old_gravity_source() 10 0.006941 0.009388 0.009875 0.28% Castro::computeNewDt() 9 0.009481 0.009494 0.009502 0.27% Castro::enforce_min_density() 62 0.007026 0.007409 0.008078 0.23% AmrLevel::AmrLevel(dm) 1 0.005079 0.005798 0.007866 0.22% StateData::define() 4 0.005063 0.005773 0.007828 0.22% Castro::swap_state_time_levels() 10 0.003744 0.004302 0.005988 0.17% Castro::finalize_advance() 10 0.002991 0.003681 0.004413 0.12% Castro::post_regrid() 1 0.00154 0.001943 0.002948 0.08% Castro::buildMetrics() 1 0.001568 0.001814 0.002462 0.07% Amr::InitAmr() 1 0.0002755 0.0003611 0.0006388 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.34e-05 0.0003244 0.0004103 0.01% DistributionMapping::LeastUsedCPUs() 1 8.076e-06 0.0003182 0.0004021 0.01% Castro::enforce_consistent_e() 1 8.291e-05 9.926e-05 0.000142 0.00% FabArrayBase::getCPC() 41 7.104e-05 8.141e-05 9.787e-05 0.00% Amr::writeSmallPlotFile() 1 3.196e-05 5.022e-05 6.404e-05 0.00% Castro::enforce_speed_limit() 62 2.527e-05 2.882e-05 3.217e-05 0.00% FabArrayBase::CPC::define() 2 2.199e-05 2.623e-05 2.874e-05 0.00% Amr::initSubcycle() 1 8.67e-06 1.066e-05 1.534e-05 0.00% Gravity::swapTimeLevels() 10 1.141e-05 1.324e-05 1.532e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.129e-05 1.293e-05 0.00% Castro::create_source_corrector() 10 7.471e-06 8.554e-06 9.972e-06 0.00% Castro::retry_advance_ctu() 10 7.541e-06 8.123e-06 9.001e-06 0.00% Castro::FluxRegCrseInit 10 5.895e-06 7.331e-06 8.437e-06 0.00% Castro::FluxRegFineAdd() 10 2.15e-06 2.433e-06 2.765e-06 0.00% DistributionMapping::Distribute() 1 9.2e-07 1.207e-06 1.4e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-24-gf08b40b34bd4) finalized