MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-26-gd45933c3616d) initialized Starting run at 05:21:27 UTC on 2023-09-28. Successfully read inputs file ... Castro git describe: 23.09-34-g7561a65ab AMReX git describe: 23.09-26-gd45933c36 Microphysics git describe: 23.09-15-g2261118f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015026145 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359486748 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.371189238 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32601778 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326057283 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325759333 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358513831 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313240501 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309222631 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311862067 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307699651 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009840569 seconds Ending run at 05:21:30 UTC on 2023-09-28. Run time = 3.503199789 Run time without initialization = 3.323817686 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.502 ... 3.503 ... 3.503 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2848 2.3319 2.3978 68.45% Gravity::make_radial_gravity() 21 0.3125 0.3211 0.3329 9.50% check_for_negative_density() 10 0.01992 0.08897 0.1359 3.88% Castro::initData() 1 0.03834 0.07676 0.1138 3.25% Castro::estTimeStep() 21 0.0291 0.06428 0.09922 2.83% amrex::Copy() 193 0.06599 0.08089 0.09445 2.70% FabArray::ParallelCopy_finish() 41 0.03305 0.05318 0.08854 2.53% FabArray::setVal() 143 0.06402 0.07337 0.08017 2.29% Castro::reset_internal_energy(Fab) 1008 0.04718 0.04789 0.04888 1.40% Castro::normalize_species() 62 0.04049 0.04133 0.0434 1.24% FabArray::ParallelCopy_nowait() 41 0.03471 0.0395 0.04217 1.20% StateData::FillBoundary(geom) 41 0.03456 0.03687 0.03887 1.11% FillPatchIterator::Initialize 41 0.027 0.03186 0.03844 1.10% Gravity::interpolate_monopole_grav() 21 0.02772 0.0283 0.02877 0.82% Castro::construct_new_gravity_source() 10 0.02123 0.02396 0.02567 0.73% Castro::computeTemp() 63 0.01833 0.01947 0.02026 0.58% Castro::initialize_do_advance() 10 0.01186 0.01639 0.01822 0.52% VisMF::Write(FabArray) 2 0.01296 0.01352 0.01597 0.46% MultiFab::contains_nan() 20 0.01033 0.01208 0.01505 0.43% Castro::initialize_advance() 10 0.008934 0.0123 0.01504 0.43% FabArray::Saxpy() 20 0.01097 0.01288 0.01386 0.40% FabArray::setDomainBndry() 41 0.00885 0.01129 0.01315 0.38% Castro::construct_old_gravity_source() 10 0.006623 0.009622 0.01043 0.30% Amr::writePlotFile() 2 0.006327 0.008582 0.009289 0.27% Castro::enforce_min_density() 62 0.007051 0.007321 0.007507 0.21% Castro::construct_new_source() 50 0.005993 0.006584 0.006999 0.20% Castro::initMFs() 1 0.006038 0.006092 0.006254 0.18% StateData::define() 4 0.004997 0.005078 0.005383 0.15% Castro::swap_state_time_levels() 10 0.003118 0.004045 0.004264 0.12% main() 1 0.003304 0.003901 0.004171 0.12% Gravity::get_new_grav_vector() 11 0.002868 0.003484 0.003903 0.11% Amr::coarseTimeStep() 10 0.00108 0.001958 0.002699 0.08% Gravity::get_old_grav_vector() 10 0.001541 0.001982 0.002361 0.07% Castro::buildMetrics() 1 0.001439 0.001463 0.001494 0.04% Castro::finalize_do_advance() 10 0.0004302 0.0009428 0.001149 0.03% AmrLevel::FillPatch() 41 0.0006534 0.0007585 0.0008486 0.02% Amr::InitAmr() 1 0.0002591 0.0003198 0.0006553 0.02% Amr::timeStep() 10 0.0001599 0.0002555 0.0004668 0.01% DistributionMapping::LeastUsedCPUs() 1 9.746e-06 0.0003681 0.000427 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002612 0.0002929 0.0003268 0.01% Castro::do_advance_ctu() 10 0.0001524 0.00018 0.0002084 0.01% Castro::clean_state() 62 0.0001374 0.0001589 0.000194 0.01% StateDataPhysBCFunct::() 41 8.636e-05 0.0001038 0.0001507 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001152 0.0001283 0.00% Castro::finalize_advance() 10 7.692e-05 0.0001031 0.0001243 0.00% Castro::enforce_consistent_e() 1 7.997e-05 8.76e-05 0.0001103 0.00% Castro::do_old_sources() 10 8.188e-05 9.443e-05 0.0001043 0.00% Castro::Castro() 1 7.299e-05 8.686e-05 9.901e-05 0.00% FabArray::ParallelCopy() 41 6.857e-05 7.739e-05 9.559e-05 0.00% FillPatchSingleLevel 41 5.971e-05 6.977e-05 9.477e-05 0.00% Castro::construct_old_source() 50 5.917e-05 7.275e-05 8.898e-05 0.00% Castro::do_new_sources() 10 5.71e-05 6.7e-05 7.276e-05 0.00% Amr::FinalizeInit() 1 3.333e-06 1.302e-05 7.167e-05 0.00% Castro::construct_old_gravity() 10 3.933e-05 5.429e-05 7.041e-05 0.00% Castro::subcycle_advance_ctu() 10 3.91e-05 5.175e-05 6.734e-05 0.00% Castro::advance() 10 3.772e-05 5.084e-05 6.731e-05 0.00% Amr::writeSmallPlotFile() 1 2.918e-05 4.385e-05 6.184e-05 0.00% FabArrayBase::getCPC() 41 4.412e-05 5.263e-05 6.176e-05 0.00% Castro::apply_source_to_state() 20 4.245e-05 4.703e-05 5.243e-05 0.00% Castro::construct_new_gravity() 10 3.391e-05 3.981e-05 4.669e-05 0.00% Amr::defBaseLevel() 1 2.411e-05 3.68e-05 4.659e-05 0.00% Castro::expand_state() 10 2.291e-05 2.735e-05 4.145e-05 0.00% Castro::enforce_speed_limit() 62 2.248e-05 2.779e-05 3.534e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.757e-05 3.47e-05 0.00% Amr::initSubcycle() 1 8.519e-06 1.175e-05 3.252e-05 0.00% Castro::create_source_corrector() 10 6.283e-06 1.004e-05 2.722e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.898e-05 2.302e-05 2.549e-05 0.00% Castro::check_for_nan() 20 2.19e-05 2.384e-05 2.534e-05 0.00% Gravity::swapTimeLevels() 10 1.092e-05 1.52e-05 2.531e-05 0.00% Castro::post_timestep() 10 1.264e-05 1.496e-05 1.902e-05 0.00% Gravity::set_mass_offset() 10 9.241e-06 1.139e-05 1.282e-05 0.00% Castro::computeNewDt() 9 8.355e-06 1.001e-05 1.252e-05 0.00% Castro::post_init() 1 3.293e-06 4.378e-06 9.365e-06 0.00% Castro::FluxRegCrseInit 10 6.223e-06 7.227e-06 8.639e-06 0.00% Castro::retry_advance_ctu() 10 6.771e-06 7.463e-06 8.624e-06 0.00% Amr::InitializeInit() 1 1.854e-06 2.786e-06 7.757e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.608e-06 4.845e-06 6.089e-06 0.00% Castro::computeInitialDt() 2 3.712e-06 4.587e-06 5.274e-06 0.00% Castro::post_regrid() 1 1.786e-06 3.024e-06 5.083e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.481e-06 3.939e-06 0.00% Amr::init() 1 2.259e-06 2.491e-06 2.872e-06 0.00% Castro::FluxRegFineAdd() 10 2.217e-06 2.606e-06 2.809e-06 0.00% Amr::initialInit() 1 1.17e-06 1.532e-06 2.072e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.502 3.503 3.503 100.00% Amr::coarseTimeStep() 10 3.31 3.31 3.31 94.48% Amr::timeStep() 10 3.297 3.298 3.298 94.15% Castro::advance() 10 3.281 3.281 3.282 93.68% Castro::subcycle_advance_ctu() 10 3.199 3.203 3.212 91.68% Castro::do_advance_ctu() 10 3.199 3.203 3.212 91.68% Castro::construct_ctu_hydro_source() 10 2.439 2.442 2.444 69.76% Gravity::make_radial_gravity() 21 0.3291 0.338 0.3475 9.92% Gravity::get_new_grav_vector() 11 0.2195 0.221 0.2219 6.33% AmrLevel::FillPatch() 41 0.1969 0.2059 0.2215 6.32% Castro::construct_old_gravity() 10 0.1944 0.2006 0.2085 5.95% Gravity::get_old_grav_vector() 10 0.1934 0.1999 0.2079 5.93% FillPatchIterator::Initialize 41 0.1621 0.1731 0.1974 5.64% Castro::construct_new_gravity() 10 0.1942 0.195 0.1959 5.59% Amr::init() 1 0.1785 0.1789 0.179 5.11% Castro::initialize_do_advance() 10 0.1671 0.1713 0.175 5.00% Amr::initialInit() 1 0.1634 0.1639 0.1643 4.69% FillPatchIterator::FillFromLevel0() 41 0.1137 0.13 0.1616 4.61% FillPatchSingleLevel 41 0.1136 0.1299 0.1615 4.61% check_for_negative_density() 10 0.01992 0.08897 0.1359 3.88% Amr::InitializeInit() 1 0.05878 0.09729 0.1345 3.84% Amr::defBaseLevel() 1 0.05878 0.09729 0.1345 3.84% Castro::expand_state() 10 0.112 0.1173 0.1236 3.53% FabArray::ParallelCopy() 41 0.07537 0.09284 0.1234 3.52% Castro::initData() 1 0.04252 0.08094 0.118 3.37% Castro::clean_state() 62 0.1132 0.1156 0.1179 3.37% Amr::FinalizeInit() 1 0.02981 0.06665 0.1055 3.01% Castro::do_old_sources() 10 0.09389 0.09706 0.1003 2.86% Castro::estTimeStep() 21 0.0291 0.06428 0.09922 2.83% amrex::Copy() 193 0.06599 0.08089 0.09445 2.70% FabArray::ParallelCopy_finish() 41 0.03305 0.05318 0.08854 2.53% FabArray::setVal() 143 0.06402 0.07337 0.08017 2.29% Castro::initialize_advance() 10 0.06555 0.07532 0.07852 2.24% Castro::computeInitialDt() 2 0.002344 0.03949 0.07806 2.23% Castro::computeTemp() 63 0.06577 0.06765 0.06861 1.96% Castro::do_new_sources() 10 0.06007 0.06386 0.06813 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04744 0.04818 0.04921 1.40% Castro::reset_internal_energy(Fab) 1008 0.04718 0.04789 0.04888 1.40% Castro::normalize_species() 62 0.04049 0.04133 0.0434 1.24% FabArray::ParallelCopy_nowait() 41 0.03479 0.03958 0.04226 1.21% StateDataPhysBCFunct::() 41 0.03465 0.03698 0.03898 1.11% StateData::FillBoundary(geom) 41 0.03456 0.03687 0.03887 1.11% Castro::construct_new_source() 50 0.02722 0.03054 0.03267 0.93% Gravity::interpolate_monopole_grav() 21 0.02772 0.0283 0.02877 0.82% Castro::post_init() 1 0.02654 0.02685 0.02716 0.78% Castro::construct_new_gravity_source() 10 0.02123 0.02396 0.02567 0.73% Amr::writePlotFile() 2 0.0246 0.02489 0.02515 0.72% Castro::finalize_do_advance() 10 0.01214 0.01668 0.01996 0.57% Castro::post_timestep() 10 0.0151 0.01587 0.01666 0.48% VisMF::Write(FabArray) 2 0.01296 0.01352 0.01597 0.46% Castro::check_for_nan() 20 0.01035 0.01211 0.01508 0.43% MultiFab::contains_nan() 20 0.01033 0.01208 0.01505 0.43% Castro::apply_source_to_state() 20 0.01102 0.01293 0.01391 0.40% FabArray::Saxpy() 20 0.01097 0.01288 0.01386 0.40% FabArray::setDomainBndry() 41 0.00885 0.01129 0.01315 0.38% Castro::Castro() 1 0.01073 0.01083 0.01102 0.31% Castro::construct_old_source() 50 0.006686 0.009695 0.0105 0.30% Castro::construct_old_gravity_source() 10 0.006623 0.009622 0.01043 0.30% Castro::computeNewDt() 9 0.009064 0.009072 0.009083 0.26% Castro::enforce_min_density() 62 0.007051 0.007321 0.007507 0.21% Castro::initMFs() 1 0.006038 0.006092 0.006254 0.18% AmrLevel::AmrLevel(dm) 1 0.00502 0.005101 0.005409 0.15% StateData::define() 4 0.004997 0.005078 0.005383 0.15% Castro::swap_state_time_levels() 10 0.003118 0.004045 0.004264 0.12% Castro::finalize_advance() 10 0.00328 0.003437 0.0037 0.11% Castro::post_regrid() 1 0.001553 0.001614 0.001665 0.05% Castro::buildMetrics() 1 0.001573 0.0016 0.001631 0.05% Amr::InitAmr() 1 0.0002678 0.0003316 0.0006878 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.77e-05 0.0003745 0.0004344 0.01% DistributionMapping::LeastUsedCPUs() 1 9.746e-06 0.0003681 0.000427 0.01% Castro::enforce_consistent_e() 1 7.997e-05 8.76e-05 0.0001103 0.00% FabArrayBase::getCPC() 41 6.898e-05 8.021e-05 8.886e-05 0.00% Amr::writeSmallPlotFile() 1 2.918e-05 4.385e-05 6.184e-05 0.00% Castro::enforce_speed_limit() 62 2.248e-05 2.779e-05 3.534e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.757e-05 3.47e-05 0.00% Amr::initSubcycle() 1 8.519e-06 1.175e-05 3.252e-05 0.00% Castro::create_source_corrector() 10 6.283e-06 1.004e-05 2.722e-05 0.00% Gravity::swapTimeLevels() 10 1.092e-05 1.52e-05 2.531e-05 0.00% Gravity::set_mass_offset() 10 9.241e-06 1.139e-05 1.282e-05 0.00% Castro::FluxRegCrseInit 10 6.223e-06 7.227e-06 8.639e-06 0.00% Castro::retry_advance_ctu() 10 6.771e-06 7.463e-06 8.624e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.481e-06 3.939e-06 0.00% Castro::FluxRegFineAdd() 10 2.217e-06 2.606e-06 2.809e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-26-gd45933c3616d) finalized