MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.09-27-g6c8122d437f9) initialized Starting run at 05:37:17 UTC on 2023-09-29. Successfully read inputs file ... Castro git describe: 23.09-35-gb4030be5d AMReX git describe: 23.09-27-g6c8122d43 Microphysics git describe: 23.09-16-g973a84c1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014365558 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360929612 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353197665 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329360818 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329031619 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330505521 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.366335648 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315205285 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310997697 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312689239 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312183245 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009915423 seconds Ending run at 05:37:21 UTC on 2023-09-29. Run time = 3.534803035 Run time without initialization = 3.335667892 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.535 ... 3.535 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2913 2.3421 2.4110 68.21% Gravity::make_radial_gravity() 21 0.3197 0.3269 0.3392 9.60% check_for_negative_density() 10 0.0106 0.08449 0.1381 3.91% Castro::initData() 1 0.0389 0.08118 0.1309 3.70% Castro::estTimeStep() 21 0.03102 0.07868 0.1239 3.50% FabArray::ParallelCopy_finish() 41 0.03315 0.05816 0.09519 2.69% amrex::Copy() 193 0.06429 0.0782 0.08845 2.50% FabArray::setVal() 143 0.06388 0.06975 0.07756 2.19% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04903 0.05085 1.44% Castro::normalize_species() 62 0.04062 0.04179 0.0434 1.23% FabArray::ParallelCopy_nowait() 41 0.03389 0.04043 0.0426 1.21% StateData::FillBoundary(geom) 41 0.03451 0.03696 0.03996 1.13% FillPatchIterator::Initialize 41 0.02676 0.03235 0.03787 1.07% Gravity::interpolate_monopole_grav() 21 0.02855 0.0288 0.02905 0.82% Castro::construct_new_gravity_source() 10 0.0211 0.02376 0.0256 0.72% Castro::initialize_do_advance() 10 0.01161 0.01713 0.02504 0.71% Castro::computeTemp() 63 0.01934 0.01977 0.02021 0.57% VisMF::Write(FabArray) 2 0.01287 0.01347 0.01601 0.45% Castro::initialize_advance() 10 0.003909 0.01082 0.01463 0.41% FabArray::Saxpy() 20 0.01053 0.0126 0.01352 0.38% MultiFab::contains_nan() 20 0.01085 0.0116 0.01271 0.36% FabArray::setDomainBndry() 41 0.008421 0.01079 0.01223 0.35% Castro::construct_old_gravity_source() 10 0.006558 0.00935 0.009991 0.28% Amr::writePlotFile() 2 0.005773 0.008512 0.009235 0.26% Castro::initMFs() 1 0.00632 0.006702 0.007822 0.22% Castro::enforce_min_density() 62 0.007075 0.007314 0.007492 0.21% Castro::construct_new_source() 50 0.005775 0.006421 0.006829 0.19% StateData::define() 4 0.005134 0.005339 0.005872 0.17% Castro::swap_state_time_levels() 10 0.003099 0.004115 0.004794 0.14% main() 1 0.003911 0.004361 0.004653 0.13% Gravity::get_new_grav_vector() 11 0.002873 0.003515 0.003944 0.11% Amr::coarseTimeStep() 10 0.001338 0.002004 0.002496 0.07% Gravity::get_old_grav_vector() 10 0.001485 0.001869 0.002343 0.07% Castro::buildMetrics() 1 0.001481 0.001548 0.00172 0.05% Castro::finalize_do_advance() 10 0.0005722 0.001172 0.001521 0.04% AmrLevel::FillPatch() 41 0.0007449 0.0008913 0.001033 0.03% Amr::InitAmr() 1 0.0002573 0.0002902 0.0004504 0.01% Amr::timeStep() 10 0.0001798 0.0002324 0.0003909 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002896 0.0002998 0.01% DistributionMapping::LeastUsedCPUs() 1 8.288e-06 0.0001764 0.0002074 0.01% Castro::do_advance_ctu() 10 0.0001477 0.0001726 0.0002054 0.01% StateDataPhysBCFunct::() 41 8.998e-05 0.0001179 0.0001606 0.00% Castro::clean_state() 62 0.00013 0.000148 0.0001571 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001058 0.0001156 0.000129 0.00% Castro::finalize_advance() 10 8.39e-05 0.0001003 0.0001217 0.00% Castro::do_old_sources() 10 6.209e-05 8.455e-05 0.0001038 0.00% Castro::Castro() 1 6.092e-05 7.641e-05 9.949e-05 0.00% Castro::enforce_consistent_e() 1 7.975e-05 8.757e-05 9.369e-05 0.00% FabArray::ParallelCopy() 41 6.084e-05 7.39e-05 9.072e-05 0.00% Castro::construct_old_source() 50 4.23e-05 6.672e-05 8.826e-05 0.00% Castro::advance() 10 3.413e-05 4.894e-05 7.619e-05 0.00% Castro::do_new_sources() 10 4.497e-05 6.015e-05 7.619e-05 0.00% FillPatchSingleLevel 41 5.339e-05 6.235e-05 7.465e-05 0.00% Amr::FinalizeInit() 1 4.689e-06 1.361e-05 6.822e-05 0.00% Castro::subcycle_advance_ctu() 10 3.953e-05 5.37e-05 6.689e-05 0.00% Amr::writeSmallPlotFile() 1 2.654e-05 5.101e-05 6.451e-05 0.00% Castro::construct_old_gravity() 10 3.955e-05 4.671e-05 5.685e-05 0.00% Castro::apply_source_to_state() 20 3.396e-05 4.475e-05 4.992e-05 0.00% FabArrayBase::getCPC() 41 4.178e-05 4.504e-05 4.939e-05 0.00% Amr::defBaseLevel() 1 2.517e-05 3.608e-05 4.826e-05 0.00% Castro::construct_new_gravity() 10 3.454e-05 3.944e-05 4.81e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.127e-05 3.093e-05 3.764e-05 0.00% Castro::expand_state() 10 1.923e-05 2.552e-05 3.572e-05 0.00% Castro::enforce_speed_limit() 62 2.55e-05 2.8e-05 3.077e-05 0.00% FabArrayBase::CPC::define() 2 2.173e-05 2.588e-05 2.84e-05 0.00% Castro::check_for_nan() 20 2.1e-05 2.363e-05 2.629e-05 0.00% Gravity::swapTimeLevels() 10 8.673e-06 1.312e-05 1.867e-05 0.00% Castro::post_timestep() 10 1.225e-05 1.475e-05 1.732e-05 0.00% Gravity::set_mass_offset() 10 9.246e-06 1.103e-05 1.355e-05 0.00% Castro::computeNewDt() 9 8.753e-06 1.034e-05 1.24e-05 0.00% Castro::post_regrid() 1 2.207e-06 4.421e-06 1.106e-05 0.00% Amr::initSubcycle() 1 8.897e-06 9.485e-06 1.017e-05 0.00% Castro::FluxRegCrseInit 10 6.628e-06 7.696e-06 9.52e-06 0.00% Castro::create_source_corrector() 10 5.993e-06 7.847e-06 8.653e-06 0.00% Castro::retry_advance_ctu() 10 6.373e-06 7.259e-06 8.414e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.737e-06 5.73e-06 6.912e-06 0.00% Castro::computeInitialDt() 2 4.067e-06 4.8e-06 6.901e-06 0.00% Castro::post_init() 1 3.288e-06 4.115e-06 4.988e-06 0.00% Amr::InitializeInit() 1 1.871e-06 2.571e-06 4.954e-06 0.00% Amr::init() 1 2.063e-06 2.382e-06 3.181e-06 0.00% Castro::FluxRegFineAdd() 10 2.159e-06 2.337e-06 2.772e-06 0.00% Amr::initialInit() 1 1.393e-06 1.608e-06 1.897e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.382e-06 1.714e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.535 3.535 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 93.96% Amr::timeStep() 10 3.308 3.309 3.309 93.62% Castro::advance() 10 3.292 3.293 3.293 93.16% Castro::subcycle_advance_ctu() 10 3.214 3.218 3.227 91.30% Castro::do_advance_ctu() 10 3.213 3.218 3.227 91.30% Castro::construct_ctu_hydro_source() 10 2.444 2.448 2.451 69.34% Gravity::make_radial_gravity() 21 0.3358 0.3429 0.3525 9.97% Gravity::get_new_grav_vector() 11 0.2212 0.2232 0.2242 6.34% AmrLevel::FillPatch() 41 0.1978 0.2102 0.2242 6.34% Castro::construct_old_gravity() 10 0.1989 0.2033 0.213 6.03% Gravity::get_old_grav_vector() 10 0.1978 0.2026 0.2124 6.01% FillPatchIterator::Initialize 41 0.1635 0.1791 0.2009 5.68% Amr::init() 1 0.1985 0.1987 0.1987 5.62% Castro::construct_new_gravity() 10 0.1947 0.1958 0.1965 5.56% Amr::initialInit() 1 0.1839 0.1841 0.1843 5.21% Castro::initialize_do_advance() 10 0.174 0.1771 0.181 5.12% FillPatchIterator::FillFromLevel0() 41 0.1142 0.136 0.1657 4.69% FillPatchSingleLevel 41 0.1141 0.1359 0.1656 4.68% Amr::InitializeInit() 1 0.05916 0.1017 0.1526 4.32% Amr::defBaseLevel() 1 0.05916 0.1017 0.1526 4.32% check_for_negative_density() 10 0.0106 0.08449 0.1381 3.91% Castro::initData() 1 0.0431 0.08532 0.1348 3.81% FabArray::ParallelCopy() 41 0.07558 0.09874 0.1292 3.66% Castro::expand_state() 10 0.1147 0.1225 0.1289 3.65% Amr::FinalizeInit() 1 0.03173 0.08238 0.125 3.54% Castro::estTimeStep() 21 0.03102 0.07868 0.1239 3.50% Castro::clean_state() 62 0.1149 0.1174 0.1195 3.38% Castro::do_old_sources() 10 0.09149 0.09632 0.1009 2.85% Castro::computeInitialDt() 2 0.002503 0.05337 0.09598 2.72% FabArray::ParallelCopy_finish() 41 0.03315 0.05816 0.09519 2.69% amrex::Copy() 193 0.06429 0.0782 0.08845 2.50% FabArray::setVal() 143 0.06388 0.06975 0.07756 2.19% Castro::initialize_advance() 10 0.06132 0.07154 0.07603 2.15% Castro::computeTemp() 63 0.06747 0.06909 0.07127 2.02% Castro::do_new_sources() 10 0.06014 0.06367 0.06904 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04808 0.04932 0.05115 1.45% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04903 0.05085 1.44% Castro::normalize_species() 62 0.04062 0.04179 0.0434 1.23% FabArray::ParallelCopy_nowait() 41 0.03397 0.0405 0.04266 1.21% StateDataPhysBCFunct::() 41 0.0346 0.03708 0.0401 1.13% StateData::FillBoundary(geom) 41 0.03451 0.03696 0.03996 1.13% Castro::construct_new_source() 50 0.02687 0.03018 0.0323 0.91% Gravity::interpolate_monopole_grav() 21 0.02855 0.0288 0.02905 0.82% Castro::post_init() 1 0.02662 0.02836 0.02871 0.81% Castro::construct_new_gravity_source() 10 0.0211 0.02376 0.0256 0.72% Amr::writePlotFile() 2 0.02437 0.02458 0.02484 0.70% Castro::finalize_do_advance() 10 0.01198 0.01737 0.02092 0.59% Castro::post_timestep() 10 0.01548 0.01587 0.01645 0.47% VisMF::Write(FabArray) 2 0.01287 0.01347 0.01601 0.45% Castro::apply_source_to_state() 20 0.01057 0.01265 0.01357 0.38% FabArray::Saxpy() 20 0.01053 0.0126 0.01352 0.38% Castro::check_for_nan() 20 0.01087 0.01162 0.01273 0.36% MultiFab::contains_nan() 20 0.01085 0.0116 0.01271 0.36% FabArray::setDomainBndry() 41 0.008421 0.01079 0.01223 0.35% Castro::Castro() 1 0.01048 0.01081 0.01164 0.33% Castro::construct_old_source() 50 0.0066 0.009417 0.01007 0.28% Castro::construct_old_gravity_source() 10 0.006558 0.00935 0.009991 0.28% Castro::computeNewDt() 9 0.009122 0.009131 0.009141 0.26% Castro::initMFs() 1 0.00632 0.006702 0.007822 0.22% Castro::enforce_min_density() 62 0.007075 0.007314 0.007492 0.21% AmrLevel::AmrLevel(dm) 1 0.005166 0.00537 0.005894 0.17% StateData::define() 4 0.005134 0.005339 0.005872 0.17% Castro::swap_state_time_levels() 10 0.003099 0.004115 0.004794 0.14% Castro::post_regrid() 1 0.001569 0.001914 0.003737 0.11% Castro::finalize_advance() 10 0.00309 0.003306 0.003671 0.10% Castro::buildMetrics() 1 0.001614 0.001695 0.001888 0.05% Amr::InitAmr() 1 0.0002664 0.0002996 0.0004593 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.294e-05 0.0001835 0.0002158 0.01% DistributionMapping::LeastUsedCPUs() 1 8.288e-06 0.0001764 0.0002074 0.01% Castro::enforce_consistent_e() 1 7.975e-05 8.757e-05 9.369e-05 0.00% FabArrayBase::getCPC() 41 6.599e-05 7.092e-05 7.779e-05 0.00% Amr::writeSmallPlotFile() 1 2.654e-05 5.101e-05 6.451e-05 0.00% Castro::enforce_speed_limit() 62 2.55e-05 2.8e-05 3.077e-05 0.00% FabArrayBase::CPC::define() 2 2.173e-05 2.588e-05 2.84e-05 0.00% Gravity::swapTimeLevels() 10 8.673e-06 1.312e-05 1.867e-05 0.00% Gravity::set_mass_offset() 10 9.246e-06 1.103e-05 1.355e-05 0.00% Amr::initSubcycle() 1 8.897e-06 9.485e-06 1.017e-05 0.00% Castro::FluxRegCrseInit 10 6.628e-06 7.696e-06 9.52e-06 0.00% Castro::create_source_corrector() 10 5.993e-06 7.847e-06 8.653e-06 0.00% Castro::retry_advance_ctu() 10 6.373e-06 7.259e-06 8.414e-06 0.00% Castro::FluxRegFineAdd() 10 2.159e-06 2.337e-06 2.772e-06 0.00% DistributionMapping::Distribute() 1 9.12e-07 1.382e-06 1.714e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 34 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.09-27-g6c8122d437f9) finalized