MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-5-g87556458d867) initialized Starting run at 05:22:16 UTC on 2023-10-04. Successfully read inputs file ... Castro git describe: 23.10-4-g104a57d85 AMReX git describe: 23.10-5-g87556458d Microphysics git describe: 23.10-3-ge3e866c0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.198681647 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.37656168 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34703802 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346340539 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332097597 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369365726 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.333640405 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309792306 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309995668 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30959945 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310384809 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009497595 seconds Ending run at 05:22:20 UTC on 2023-10-04. Run time = 3.731516316 Run time without initialization = 3.359775031 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.73 ... 3.731 ... 3.732 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2854 2.3450 2.4098 64.58% Gravity::make_radial_gravity() 21 0.3272 0.3319 0.3364 9.02% Amr::writePlotFile() 2 0.1907 0.1932 0.1941 5.20% check_for_negative_density() 10 0.01956 0.08806 0.1482 3.97% Castro::estTimeStep() 21 0.04066 0.08253 0.1297 3.47% Castro::initData() 1 0.03873 0.07921 0.1222 3.27% FabArray::setVal() 143 0.06372 0.06912 0.0832 2.23% amrex::Copy() 193 0.06776 0.07629 0.08282 2.22% FabArray::ParallelCopy_finish() 41 0.04219 0.05586 0.07326 1.96% Castro::reset_internal_energy(Fab) 1008 0.04665 0.04897 0.05137 1.38% Castro::normalize_species() 62 0.04092 0.04216 0.04353 1.17% FabArray::ParallelCopy_nowait() 41 0.03516 0.03999 0.04193 1.12% StateData::FillBoundary(geom) 41 0.03542 0.03775 0.04057 1.09% FillPatchIterator::Initialize 41 0.0281 0.03158 0.03381 0.91% Castro::construct_new_gravity_source() 10 0.02186 0.0247 0.02985 0.80% Gravity::interpolate_monopole_grav() 21 0.02837 0.02871 0.02961 0.79% Castro::computeTemp() 63 0.01897 0.01996 0.02053 0.55% Castro::initialize_do_advance() 10 0.0123 0.01704 0.01967 0.53% Castro::initialize_advance() 10 0.009698 0.01229 0.01511 0.40% VisMF::Write(FabArray) 2 0.01219 0.01262 0.01483 0.40% FabArray::Saxpy() 20 0.01075 0.01246 0.01328 0.36% MultiFab::contains_nan() 20 0.01054 0.01174 0.01326 0.36% FabArray::setDomainBndry() 41 0.009369 0.01112 0.01253 0.34% Castro::construct_old_gravity_source() 10 0.007446 0.009648 0.01036 0.28% Castro::initMFs() 1 0.006311 0.006802 0.008131 0.22% Castro::enforce_min_density() 62 0.007157 0.007421 0.007886 0.21% Castro::construct_new_source() 50 0.005928 0.006158 0.006483 0.17% StateData::define() 4 0.005186 0.005455 0.005938 0.16% main() 1 0.003268 0.004178 0.00471 0.13% Castro::swap_state_time_levels() 10 0.002994 0.004002 0.004361 0.12% Amr::coarseTimeStep() 10 0.002247 0.00297 0.003775 0.10% Gravity::get_new_grav_vector() 11 0.002988 0.003457 0.003774 0.10% Gravity::get_old_grav_vector() 10 0.001698 0.001956 0.002196 0.06% Castro::finalize_do_advance() 10 0.0005453 0.001415 0.001862 0.05% Castro::buildMetrics() 1 0.001481 0.001545 0.001748 0.05% AmrLevel::FillPatch() 41 0.00077 0.0009887 0.001229 0.03% Amr::InitAmr() 1 0.0002631 0.0002959 0.0004415 0.01% Amr::timeStep() 10 0.0001884 0.0002357 0.0003946 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002677 0.0003001 0.0003365 0.01% Castro::clean_state() 62 0.0001433 0.00017 0.0002258 0.01% Castro::do_advance_ctu() 10 0.000145 0.0001741 0.0001897 0.01% DistributionMapping::LeastUsedCPUs() 1 9.542e-06 0.0001601 0.0001868 0.01% FillPatchIterator::FillFromLevel0() 41 9.681e-05 0.0001198 0.0001647 0.00% Castro::finalize_advance() 10 8.747e-05 0.0001067 0.0001226 0.00% StateDataPhysBCFunct::() 41 9.527e-05 0.000107 0.0001223 0.00% Castro::enforce_consistent_e() 1 7.933e-05 8.649e-05 0.0001003 0.00% Castro::do_old_sources() 10 8.772e-05 9.458e-05 0.0001002 0.00% Castro::construct_old_source() 50 5.858e-05 7.383e-05 9.662e-05 0.00% Amr::FinalizeInit() 1 4.408e-06 1.674e-05 8.79e-05 0.00% Castro::Castro() 1 5.578e-05 6.547e-05 8.657e-05 0.00% FillPatchSingleLevel 41 6.507e-05 7.253e-05 8.451e-05 0.00% FabArray::ParallelCopy() 41 6.483e-05 7.503e-05 8.416e-05 0.00% Castro::do_new_sources() 10 4.984e-05 6.47e-05 7.495e-05 0.00% Amr::writeSmallPlotFile() 1 2.954e-05 5.016e-05 6.35e-05 0.00% Castro::subcycle_advance_ctu() 10 5.223e-05 5.711e-05 6.142e-05 0.00% FabArrayBase::getCPC() 41 4.267e-05 5.019e-05 5.996e-05 0.00% Castro::advance() 10 3.906e-05 4.857e-05 5.948e-05 0.00% Castro::construct_new_gravity() 10 3.485e-05 4.326e-05 5.565e-05 0.00% Castro::construct_old_gravity() 10 3.945e-05 4.546e-05 5.174e-05 0.00% Castro::apply_source_to_state() 20 4.052e-05 4.492e-05 4.915e-05 0.00% Amr::defBaseLevel() 1 2.431e-05 2.996e-05 3.648e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.892e-05 3.387e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.36e-05 2.672e-05 3.313e-05 0.00% FabArrayBase::CPC::define() 2 2.265e-05 2.477e-05 2.883e-05 0.00% Castro::expand_state() 10 2.099e-05 2.473e-05 2.81e-05 0.00% Castro::check_for_nan() 20 2.128e-05 2.336e-05 2.481e-05 0.00% Gravity::swapTimeLevels() 10 1.24e-05 1.521e-05 1.897e-05 0.00% Castro::post_timestep() 10 1.38e-05 1.52e-05 1.751e-05 0.00% Gravity::set_mass_offset() 10 8.845e-06 1.21e-05 1.585e-05 0.00% Castro::computeNewDt() 9 7.871e-06 1.073e-05 1.335e-05 0.00% Amr::initSubcycle() 1 8.526e-06 9.36e-06 1.042e-05 0.00% Castro::FluxRegCrseInit 10 6.391e-06 8.293e-06 9.746e-06 0.00% Castro::create_source_corrector() 10 7.161e-06 8.32e-06 9.09e-06 0.00% Castro::retry_advance_ctu() 10 6.629e-06 7.945e-06 8.819e-06 0.00% Amr::initialInit() 1 1.366e-06 3.226e-06 7.725e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.784e-06 5.032e-06 7.098e-06 0.00% Amr::init() 1 2.178e-06 3.054e-06 6.989e-06 0.00% Castro::computeInitialDt() 2 3.974e-06 4.895e-06 5.876e-06 0.00% Amr::InitializeInit() 1 1.885e-06 2.508e-06 5.601e-06 0.00% Castro::post_init() 1 3.192e-06 3.883e-06 4.692e-06 0.00% Castro::post_regrid() 1 2.062e-06 3.281e-06 4.592e-06 0.00% Castro::FluxRegFineAdd() 10 2.118e-06 2.464e-06 3.053e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.076e-06 1.425e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.73 3.731 3.732 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 89.66% Amr::timeStep() 10 3.331 3.332 3.332 89.30% Castro::advance() 10 3.315 3.315 3.316 88.86% Castro::subcycle_advance_ctu() 10 3.23 3.238 3.243 86.90% Castro::do_advance_ctu() 10 3.23 3.238 3.243 86.90% Castro::construct_ctu_hydro_source() 10 2.451 2.455 2.459 65.88% Amr::init() 1 0.3711 0.3713 0.3713 9.95% Gravity::make_radial_gravity() 21 0.3432 0.3483 0.3518 9.43% Gravity::get_new_grav_vector() 11 0.2282 0.2318 0.2337 6.26% AmrLevel::FillPatch() 41 0.1828 0.2068 0.2155 5.78% Amr::writePlotFile() 2 0.2084 0.2087 0.2089 5.60% Castro::construct_new_gravity() 10 0.2042 0.2071 0.2081 5.58% Castro::construct_old_gravity() 10 0.1961 0.1999 0.2052 5.50% Gravity::get_old_grav_vector() 10 0.1956 0.1994 0.2046 5.48% FillPatchIterator::Initialize 41 0.1541 0.1767 0.1878 5.03% Castro::initialize_do_advance() 10 0.162 0.1742 0.1811 4.85% Amr::initialInit() 1 0.1721 0.1722 0.1724 4.62% FillPatchIterator::FillFromLevel0() 41 0.1167 0.134 0.1495 4.01% FillPatchSingleLevel 41 0.1165 0.1339 0.1494 4.00% check_for_negative_density() 10 0.01956 0.08806 0.1482 3.97% Amr::InitializeInit() 1 0.05851 0.09957 0.1437 3.85% Amr::defBaseLevel() 1 0.05851 0.09957 0.1437 3.85% Castro::estTimeStep() 21 0.04066 0.08253 0.1297 3.47% Castro::expand_state() 10 0.1042 0.1196 0.1272 3.41% Castro::initData() 1 0.04271 0.08313 0.1258 3.37% Castro::clean_state() 62 0.1142 0.1181 0.1224 3.28% Amr::FinalizeInit() 1 0.02862 0.07267 0.1139 3.05% FabArray::ParallelCopy() 41 0.08094 0.096 0.1086 2.91% Castro::do_old_sources() 10 0.08869 0.09419 0.09747 2.61% Castro::computeInitialDt() 2 0.002215 0.04633 0.08741 2.34% FabArray::setVal() 143 0.06372 0.06912 0.0832 2.23% amrex::Copy() 193 0.06776 0.07629 0.08282 2.22% Castro::initialize_advance() 10 0.06947 0.0736 0.08115 2.17% Castro::do_new_sources() 10 0.05847 0.06418 0.07396 1.98% FabArray::ParallelCopy_finish() 41 0.04219 0.05586 0.07326 1.96% Castro::computeTemp() 63 0.06624 0.06923 0.07219 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04692 0.04928 0.05168 1.39% Castro::reset_internal_energy(Fab) 1008 0.04665 0.04897 0.05137 1.38% Castro::normalize_species() 62 0.04092 0.04216 0.04353 1.17% FabArray::ParallelCopy_nowait() 41 0.03525 0.04006 0.042 1.13% StateDataPhysBCFunct::() 41 0.03554 0.03786 0.04069 1.09% StateData::FillBoundary(geom) 41 0.03542 0.03775 0.04057 1.09% Castro::construct_new_source() 50 0.02795 0.03086 0.03634 0.97% Castro::finalize_do_advance() 10 0.01731 0.02787 0.03406 0.91% Castro::construct_new_gravity_source() 10 0.02186 0.0247 0.02985 0.80% Gravity::interpolate_monopole_grav() 21 0.02837 0.02871 0.02961 0.79% Castro::post_init() 1 0.0257 0.02583 0.02602 0.70% Castro::post_timestep() 10 0.01565 0.0163 0.0174 0.47% VisMF::Write(FabArray) 2 0.01219 0.01262 0.01483 0.40% Castro::apply_source_to_state() 20 0.0108 0.0125 0.01332 0.36% Castro::check_for_nan() 20 0.01056 0.01176 0.01328 0.36% FabArray::Saxpy() 20 0.01075 0.01246 0.01328 0.36% MultiFab::contains_nan() 20 0.01054 0.01174 0.01326 0.36% FabArray::setDomainBndry() 41 0.009369 0.01112 0.01253 0.34% Castro::Castro() 1 0.01035 0.01075 0.01171 0.31% Castro::construct_old_source() 50 0.007514 0.009722 0.01043 0.28% Castro::construct_old_gravity_source() 10 0.007446 0.009648 0.01036 0.28% Castro::computeNewDt() 9 0.009744 0.009757 0.009768 0.26% Castro::initMFs() 1 0.006311 0.006802 0.008131 0.22% Castro::enforce_min_density() 62 0.007157 0.007421 0.007886 0.21% AmrLevel::AmrLevel(dm) 1 0.005217 0.005482 0.005962 0.16% StateData::define() 4 0.005186 0.005455 0.005938 0.16% Castro::swap_state_time_levels() 10 0.002994 0.004002 0.004361 0.12% Castro::finalize_advance() 10 0.002982 0.003262 0.004294 0.12% Castro::post_regrid() 1 0.001551 0.001641 0.001917 0.05% Castro::buildMetrics() 1 0.001617 0.001691 0.001917 0.05% Amr::InitAmr() 1 0.0002725 0.0003053 0.0004519 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.482e-05 0.0001662 0.0001942 0.01% DistributionMapping::LeastUsedCPUs() 1 9.542e-06 0.0001601 0.0001868 0.01% Castro::enforce_consistent_e() 1 7.933e-05 8.649e-05 0.0001003 0.00% FabArrayBase::getCPC() 41 6.579e-05 7.495e-05 8.633e-05 0.00% Amr::writeSmallPlotFile() 1 2.954e-05 5.016e-05 6.35e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.892e-05 3.387e-05 0.00% FabArrayBase::CPC::define() 2 2.265e-05 2.477e-05 2.883e-05 0.00% Gravity::swapTimeLevels() 10 1.24e-05 1.521e-05 1.897e-05 0.00% Gravity::set_mass_offset() 10 8.845e-06 1.21e-05 1.585e-05 0.00% Amr::initSubcycle() 1 8.526e-06 9.36e-06 1.042e-05 0.00% Castro::FluxRegCrseInit 10 6.391e-06 8.293e-06 9.746e-06 0.00% Castro::create_source_corrector() 10 7.161e-06 8.32e-06 9.09e-06 0.00% Castro::retry_advance_ctu() 10 6.629e-06 7.945e-06 8.819e-06 0.00% Castro::FluxRegFineAdd() 10 2.118e-06 2.464e-06 3.053e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.076e-06 1.425e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-5-g87556458d867) finalized