MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-5-g87556458d867) initialized Starting run at 14:21:55 UTC on 2023-10-05. Successfully read inputs file ... Castro git describe: 23.10-16-g951b28c87 AMReX git describe: 23.10-5-g87556458d Microphysics git describe: 23.10-3-ge3e866c0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014235655 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358110856 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.364565829 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33539862 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332522246 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350827287 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.355313871 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309484509 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311009963 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314212515 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309370551 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010028763 seconds Ending run at 14:21:59 UTC on 2023-10-05. Run time = 3.543843065 Run time without initialization = 3.356581673 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2892 2.3354 2.3803 67.17% Gravity::make_radial_gravity() 21 0.3152 0.3237 0.3343 9.43% Castro::estTimeStep() 21 0.02536 0.08462 0.1297 3.66% check_for_negative_density() 10 0.02726 0.07478 0.1243 3.51% Castro::initData() 1 0.0384 0.07773 0.122 3.44% amrex::Copy() 193 0.07194 0.08083 0.09185 2.59% FabArray::setVal() 143 0.06493 0.07557 0.09024 2.55% FabArray::ParallelCopy_finish() 41 0.03385 0.06056 0.07827 2.21% Castro::reset_internal_energy(Fab) 1008 0.04733 0.04918 0.0523 1.48% Castro::normalize_species() 62 0.04107 0.04243 0.04457 1.26% FabArray::ParallelCopy_nowait() 41 0.03536 0.0411 0.04349 1.23% StateData::FillBoundary(geom) 41 0.034 0.03768 0.0416 1.17% FillPatchIterator::Initialize 41 0.0278 0.03457 0.03996 1.13% Castro::construct_new_gravity_source() 10 0.02239 0.02476 0.03142 0.89% Gravity::interpolate_monopole_grav() 21 0.02841 0.02861 0.02897 0.82% Castro::initialize_do_advance() 10 0.01228 0.01891 0.02466 0.70% Castro::computeTemp() 63 0.01809 0.0195 0.02058 0.58% VisMF::Write(FabArray) 2 0.01226 0.0128 0.01517 0.43% Castro::initialize_advance() 10 0.009749 0.01235 0.01507 0.43% FabArray::Saxpy() 20 0.01156 0.01309 0.01411 0.40% FabArray::setDomainBndry() 41 0.008593 0.01179 0.0132 0.37% MultiFab::contains_nan() 20 0.01096 0.01189 0.01256 0.35% Castro::construct_old_gravity_source() 10 0.006858 0.009744 0.01057 0.30% Castro::construct_new_source() 50 0.005979 0.006751 0.009751 0.28% Amr::writePlotFile() 2 0.0063 0.008886 0.009554 0.27% Amr::coarseTimeStep() 10 0.0009378 0.006003 0.008839 0.25% Castro::initMFs() 1 0.006162 0.006439 0.008208 0.23% Castro::enforce_min_density() 62 0.007021 0.007433 0.007657 0.22% StateData::define() 4 0.005156 0.005262 0.005819 0.16% Castro::swap_state_time_levels() 10 0.003346 0.004512 0.005245 0.15% main() 1 0.003539 0.004401 0.00507 0.14% Gravity::get_new_grav_vector() 11 0.002949 0.003624 0.004014 0.11% Gravity::get_old_grav_vector() 10 0.001562 0.002039 0.002486 0.07% Castro::buildMetrics() 1 0.00144 0.001479 0.001674 0.05% Castro::finalize_do_advance() 10 0.0005746 0.001032 0.001209 0.03% AmrLevel::FillPatch() 41 0.0007903 0.000894 0.001091 0.03% Amr::timeStep() 10 0.0001992 0.0002482 0.0004259 0.01% Amr::InitAmr() 1 0.0002471 0.0002782 0.0003933 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0003036 0.0003429 0.01% Castro::do_advance_ctu() 10 0.0001519 0.0001907 0.0002662 0.01% Castro::clean_state() 62 0.0001424 0.0001575 0.0001831 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001001 0.0001292 0.0001692 0.00% Castro::finalize_advance() 10 9.168e-05 0.0001131 0.0001493 0.00% DistributionMapping::LeastUsedCPUs() 1 7.328e-06 0.000115 0.0001349 0.00% StateDataPhysBCFunct::() 41 8.745e-05 0.0001062 0.0001179 0.00% Castro::do_old_sources() 10 7.201e-05 9.496e-05 0.0001172 0.00% Castro::Castro() 1 5.306e-05 7.95e-05 0.0001056 0.00% Castro::construct_old_source() 50 5.665e-05 7.519e-05 0.0001043 0.00% FillPatchSingleLevel 41 5.981e-05 7.598e-05 9.762e-05 0.00% Castro::enforce_consistent_e() 1 7.583e-05 8.508e-05 9.492e-05 0.00% FabArray::ParallelCopy() 41 6.364e-05 7.75e-05 9.003e-05 0.00% Amr::FinalizeInit() 1 4.594e-06 1.662e-05 8.947e-05 0.00% FabArrayBase::getCPC() 41 3.996e-05 5.293e-05 7.604e-05 0.00% Castro::do_new_sources() 10 5.478e-05 6.697e-05 7.359e-05 0.00% Amr::writeSmallPlotFile() 1 2.751e-05 5.704e-05 6.99e-05 0.00% Castro::subcycle_advance_ctu() 10 5.363e-05 5.912e-05 6.715e-05 0.00% Castro::apply_source_to_state() 20 3.909e-05 4.842e-05 6.141e-05 0.00% Castro::advance() 10 4.041e-05 4.949e-05 6.021e-05 0.00% Castro::construct_old_gravity() 10 3.906e-05 4.76e-05 5.633e-05 0.00% Castro::construct_new_gravity() 10 3.571e-05 4.268e-05 5.266e-05 0.00% Castro::retry_advance_ctu() 10 6.257e-06 2.6e-05 4.915e-05 0.00% Amr::defBaseLevel() 1 2.609e-05 3.524e-05 4.644e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 3.032e-05 3.93e-05 0.00% Castro::expand_state() 10 2.186e-05 2.889e-05 3.831e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.011e-05 2.643e-05 3.511e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.552e-05 3.034e-05 0.00% Castro::check_for_nan() 20 2.122e-05 2.397e-05 2.986e-05 0.00% Castro::post_timestep() 10 1.469e-05 2.11e-05 2.982e-05 0.00% Castro::FluxRegCrseInit 10 6.348e-06 1.482e-05 2.558e-05 0.00% Gravity::swapTimeLevels() 10 1.181e-05 1.53e-05 1.81e-05 0.00% Amr::initSubcycle() 1 8.592e-06 1.329e-05 1.745e-05 0.00% Gravity::set_mass_offset() 10 9.711e-06 1.199e-05 1.496e-05 0.00% Castro::computeNewDt() 9 9.127e-06 1.016e-05 1.09e-05 0.00% Castro::create_source_corrector() 10 7.479e-06 8.313e-06 1.006e-05 0.00% Castro::post_init() 1 3.453e-06 4.841e-06 9.007e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.723e-06 5.028e-06 6.299e-06 0.00% Castro::computeInitialDt() 2 4.392e-06 5.073e-06 6.168e-06 0.00% Castro::post_regrid() 1 2.179e-06 3.423e-06 5.152e-06 0.00% Amr::InitializeInit() 1 1.767e-06 2.33e-06 4.797e-06 0.00% Amr::init() 1 1.823e-06 2.52e-06 3.073e-06 0.00% Castro::FluxRegFineAdd() 10 2.025e-06 2.269e-06 2.725e-06 0.00% Amr::initialInit() 1 1.144e-06 1.557e-06 2.033e-06 0.00% DistributionMapping::Distribute() 1 8.74e-07 1.059e-06 1.255e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.342 3.342 3.342 94.29% Amr::timeStep() 10 3.322 3.325 3.33 93.97% Castro::advance() 10 3.307 3.308 3.309 93.38% Castro::subcycle_advance_ctu() 10 3.215 3.224 3.233 91.22% Castro::do_advance_ctu() 10 3.215 3.224 3.233 91.21% Castro::construct_ctu_hydro_source() 10 2.426 2.432 2.436 68.73% Gravity::make_radial_gravity() 21 0.332 0.3409 0.349 9.85% AmrLevel::FillPatch() 41 0.1954 0.217 0.24 6.77% Gravity::get_new_grav_vector() 11 0.2233 0.2253 0.2265 6.39% Castro::construct_old_gravity() 10 0.1945 0.2021 0.2094 5.91% Gravity::get_old_grav_vector() 10 0.1938 0.2013 0.2088 5.89% FillPatchIterator::Initialize 41 0.1632 0.1862 0.2073 5.85% Castro::construct_new_gravity() 10 0.1987 0.2004 0.2015 5.69% Castro::initialize_do_advance() 10 0.1658 0.1817 0.1961 5.53% Amr::init() 1 0.1867 0.1868 0.1869 5.27% Amr::initialInit() 1 0.172 0.1722 0.1723 4.86% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1398 0.159 4.49% FillPatchSingleLevel 41 0.1112 0.1397 0.1589 4.48% Amr::InitializeInit() 1 0.05843 0.09796 0.1433 4.04% Amr::defBaseLevel() 1 0.05843 0.09795 0.1433 4.04% Castro::expand_state() 10 0.1109 0.1252 0.1403 3.96% Castro::estTimeStep() 21 0.02536 0.08462 0.1297 3.66% Castro::initData() 1 0.04253 0.08177 0.1256 3.54% Castro::clean_state() 62 0.114 0.1181 0.1245 3.51% check_for_negative_density() 10 0.02726 0.07478 0.1243 3.51% FabArray::ParallelCopy() 41 0.07451 0.1018 0.1179 3.33% Amr::FinalizeInit() 1 0.02893 0.07428 0.1135 3.20% Castro::do_old_sources() 10 0.09412 0.09874 0.1032 2.91% amrex::Copy() 193 0.07194 0.08083 0.09185 2.59% FabArray::setVal() 143 0.06493 0.07557 0.09024 2.55% Castro::initialize_advance() 10 0.07109 0.0791 0.08856 2.50% Castro::computeInitialDt() 2 0.002699 0.04804 0.08759 2.47% Castro::do_new_sources() 10 0.06026 0.06526 0.07954 2.24% FabArray::ParallelCopy_finish() 41 0.03385 0.06056 0.07827 2.21% Castro::computeTemp() 63 0.06571 0.06899 0.07313 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04761 0.04948 0.0526 1.48% Castro::reset_internal_energy(Fab) 1008 0.04733 0.04918 0.0523 1.48% Castro::normalize_species() 62 0.04107 0.04243 0.04457 1.26% FabArray::ParallelCopy_nowait() 41 0.03547 0.04118 0.04357 1.23% StateDataPhysBCFunct::() 41 0.03411 0.03778 0.04171 1.18% StateData::FillBoundary(geom) 41 0.034 0.03768 0.0416 1.17% Castro::construct_new_source() 50 0.02837 0.03151 0.04117 1.16% Castro::finalize_do_advance() 10 0.01424 0.02823 0.03422 0.97% Castro::construct_new_gravity_source() 10 0.02239 0.02476 0.03142 0.89% Gravity::interpolate_monopole_grav() 21 0.02841 0.02861 0.02897 0.82% Castro::post_init() 1 0.02542 0.02576 0.0259 0.73% Amr::writePlotFile() 2 0.02449 0.02469 0.02497 0.70% Castro::post_timestep() 10 0.01548 0.01696 0.02041 0.58% VisMF::Write(FabArray) 2 0.01226 0.0128 0.01517 0.43% Castro::apply_source_to_state() 20 0.0116 0.01314 0.01416 0.40% FabArray::Saxpy() 20 0.01156 0.01309 0.01411 0.40% FabArray::setDomainBndry() 41 0.008593 0.01179 0.0132 0.37% Castro::check_for_nan() 20 0.01099 0.01191 0.01258 0.36% MultiFab::contains_nan() 20 0.01096 0.01189 0.01256 0.35% Castro::Castro() 1 0.01052 0.01074 0.01167 0.33% Castro::construct_old_source() 50 0.006928 0.00982 0.01066 0.30% Castro::construct_old_gravity_source() 10 0.006858 0.009744 0.01057 0.30% Castro::computeNewDt() 9 0.009378 0.009391 0.009398 0.27% Castro::initMFs() 1 0.006162 0.006439 0.008208 0.23% Castro::enforce_min_density() 62 0.007021 0.007433 0.007657 0.22% AmrLevel::AmrLevel(dm) 1 0.005184 0.005288 0.005848 0.17% StateData::define() 4 0.005156 0.005262 0.005819 0.16% Castro::finalize_advance() 10 0.002942 0.004247 0.005719 0.16% Castro::swap_state_time_levels() 10 0.003346 0.004512 0.005245 0.15% Castro::buildMetrics() 1 0.001586 0.001631 0.001846 0.05% Castro::post_regrid() 1 0.001548 0.001597 0.001664 0.05% Amr::InitAmr() 1 0.0002618 0.0002914 0.0004019 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.201e-05 0.000121 0.0001417 0.00% DistributionMapping::LeastUsedCPUs() 1 7.328e-06 0.000115 0.0001349 0.00% FabArrayBase::getCPC() 41 6.871e-05 7.845e-05 0.0001064 0.00% Castro::enforce_consistent_e() 1 7.583e-05 8.508e-05 9.492e-05 0.00% Amr::writeSmallPlotFile() 1 2.751e-05 5.704e-05 6.99e-05 0.00% Castro::retry_advance_ctu() 10 6.257e-06 2.6e-05 4.915e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 3.032e-05 3.93e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.552e-05 3.034e-05 0.00% Castro::FluxRegCrseInit 10 6.348e-06 1.482e-05 2.558e-05 0.00% Gravity::swapTimeLevels() 10 1.181e-05 1.53e-05 1.81e-05 0.00% Amr::initSubcycle() 1 8.592e-06 1.329e-05 1.745e-05 0.00% Gravity::set_mass_offset() 10 9.711e-06 1.199e-05 1.496e-05 0.00% Castro::create_source_corrector() 10 7.479e-06 8.313e-06 1.006e-05 0.00% Castro::FluxRegFineAdd() 10 2.025e-06 2.269e-06 2.725e-06 0.00% DistributionMapping::Distribute() 1 8.74e-07 1.059e-06 1.255e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-5-g87556458d867) finalized