MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-5-g87556458d867) initialized Starting run at 05:20:52 UTC on 2023-10-05. Successfully read inputs file ... Castro git describe: 23.10-4-g104a57d85 AMReX git describe: 23.10-5-g87556458d Microphysics git describe: 23.10-3-ge3e866c0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014126504 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361251168 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349545349 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338029609 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338554705 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342356009 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.365922478 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317379446 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312560616 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313213988 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313479596 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009540589 seconds Ending run at 05:20:56 UTC on 2023-10-05. Run time = 3.542349676 Run time without initialization = 3.366998294 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2494 2.3557 2.4054 67.90% Gravity::make_radial_gravity() 21 0.3117 0.3299 0.3385 9.56% check_for_negative_density() 10 0.03304 0.08169 0.1918 5.41% Castro::initData() 1 0.0389 0.07734 0.1132 3.20% amrex::Copy() 193 0.08097 0.08719 0.09928 2.80% Castro::estTimeStep() 21 0.02206 0.06098 0.09739 2.75% FabArray::setVal() 143 0.07182 0.07498 0.08207 2.32% FabArray::ParallelCopy_finish() 41 0.04052 0.04873 0.05564 1.57% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04884 0.05057 1.43% FabArray::ParallelCopy_nowait() 41 0.04029 0.04239 0.04443 1.25% StateData::FillBoundary(geom) 41 0.03569 0.03799 0.0428 1.21% Castro::normalize_species() 62 0.04102 0.04203 0.04258 1.20% FillPatchIterator::Initialize 41 0.02724 0.0333 0.03582 1.01% Gravity::interpolate_monopole_grav() 21 0.02824 0.02883 0.02919 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02433 0.02563 0.72% Castro::computeTemp() 63 0.01872 0.01969 0.02039 0.58% Castro::initialize_do_advance() 10 0.01587 0.01723 0.01792 0.51% MultiFab::contains_nan() 20 0.01114 0.01302 0.01578 0.45% Castro::initialize_advance() 10 0.01069 0.01291 0.01556 0.44% VisMF::Write(FabArray) 2 0.01187 0.01235 0.01463 0.41% FabArray::Saxpy() 20 0.01318 0.01359 0.01386 0.39% FabArray::setDomainBndry() 41 0.009825 0.01218 0.01322 0.37% Castro::construct_old_gravity_source() 10 0.009415 0.01018 0.01079 0.30% Amr::writePlotFile() 2 0.006314 0.008465 0.008995 0.25% Castro::initMFs() 1 0.006054 0.006384 0.00808 0.23% Castro::enforce_min_density() 62 0.007245 0.007502 0.007881 0.22% Castro::construct_new_source() 50 0.006559 0.006713 0.006839 0.19% StateData::define() 4 0.005057 0.005172 0.005726 0.16% Castro::swap_state_time_levels() 10 0.003238 0.004308 0.004482 0.13% main() 1 0.003578 0.004176 0.004444 0.13% Gravity::get_new_grav_vector() 11 0.003072 0.00376 0.004095 0.12% Gravity::get_old_grav_vector() 10 0.001636 0.002216 0.003345 0.09% Amr::coarseTimeStep() 10 0.001024 0.001574 0.002029 0.06% Castro::buildMetrics() 1 0.001412 0.001459 0.001649 0.05% Castro::finalize_do_advance() 10 0.001031 0.00129 0.00157 0.04% AmrLevel::FillPatch() 41 0.000742 0.000952 0.001219 0.03% Amr::InitAmr() 1 0.0002508 0.0002792 0.000394 0.01% Amr::timeStep() 10 0.000175 0.0002241 0.0003571 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002845 0.0002936 0.0003201 0.01% Castro::do_advance_ctu() 10 0.0001605 0.000187 0.0002159 0.01% StateDataPhysBCFunct::() 41 9.171e-05 0.0001315 0.0001879 0.01% Castro::clean_state() 62 0.0001427 0.0001561 0.000166 0.00% FillPatchIterator::FillFromLevel0() 41 9.722e-05 0.0001187 0.0001396 0.00% DistributionMapping::LeastUsedCPUs() 1 7.435e-06 0.0001119 0.0001365 0.00% Castro::finalize_advance() 10 8.67e-05 0.0001057 0.0001345 0.00% Castro::do_old_sources() 10 8.47e-05 9.583e-05 0.0001084 0.00% FabArray::ParallelCopy() 41 6.581e-05 8.479e-05 0.000106 0.00% Castro::Castro() 1 6.02e-05 8.123e-05 0.0001045 0.00% Amr::FinalizeInit() 1 3.744e-06 1.772e-05 9.712e-05 0.00% FillPatchSingleLevel 41 6.251e-05 7.805e-05 9.572e-05 0.00% Castro::enforce_consistent_e() 1 7.991e-05 8.522e-05 9.361e-05 0.00% Castro::construct_old_source() 50 5.541e-05 7.173e-05 8.572e-05 0.00% Castro::do_new_sources() 10 5.473e-05 6.781e-05 8.136e-05 0.00% Castro::subcycle_advance_ctu() 10 4.188e-05 5.785e-05 8.086e-05 0.00% Amr::writeSmallPlotFile() 1 2.862e-05 5.31e-05 7.193e-05 0.00% FabArrayBase::getCPC() 41 4.371e-05 4.919e-05 6.067e-05 0.00% Castro::construct_old_gravity() 10 4.177e-05 4.735e-05 5.859e-05 0.00% Castro::advance() 10 3.65e-05 4.797e-05 5.467e-05 0.00% Castro::apply_source_to_state() 20 3.73e-05 4.56e-05 5.187e-05 0.00% Castro::construct_new_gravity() 10 3.517e-05 3.974e-05 4.404e-05 0.00% Amr::defBaseLevel() 1 2.387e-05 3.227e-05 4.141e-05 0.00% FabArrayBase::CPC::define() 2 2.26e-05 2.711e-05 3.404e-05 0.00% Castro::enforce_speed_limit() 62 2.656e-05 2.919e-05 3.254e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.532e-05 2.8e-05 3.088e-05 0.00% Castro::expand_state() 10 2.145e-05 2.493e-05 3.062e-05 0.00% Castro::check_for_nan() 20 2.257e-05 2.363e-05 2.415e-05 0.00% Gravity::swapTimeLevels() 10 1.277e-05 1.523e-05 1.829e-05 0.00% Castro::computeNewDt() 9 8.695e-06 1.39e-05 1.701e-05 0.00% Castro::post_timestep() 10 1.264e-05 1.459e-05 1.663e-05 0.00% Gravity::set_mass_offset() 10 8.664e-06 1.056e-05 1.384e-05 0.00% Castro::post_init() 1 3.224e-06 5.161e-06 1.134e-05 0.00% Amr::initSubcycle() 1 8.51e-06 9.159e-06 1.002e-05 0.00% Amr::initialInit() 1 1.308e-06 5.103e-06 9.442e-06 0.00% Castro::FluxRegCrseInit 10 5.27e-06 7.641e-06 9.025e-06 0.00% Castro::create_source_corrector() 10 7.452e-06 7.882e-06 8.335e-06 0.00% Castro::retry_advance_ctu() 10 5.992e-06 6.971e-06 7.739e-06 0.00% Castro::computeInitialDt() 2 4.026e-06 5.04e-06 6.287e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.612e-06 4.328e-06 5.817e-06 0.00% Amr::InitializeInit() 1 1.748e-06 2.336e-06 4.595e-06 0.00% Castro::post_regrid() 1 1.895e-06 3.319e-06 4.37e-06 0.00% Castro::FluxRegFineAdd() 10 1.954e-06 2.347e-06 2.73e-06 0.00% Amr::init() 1 2.296e-06 2.532e-06 2.723e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.011e-06 1.285e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.353 3.353 3.353 94.66% Amr::timeStep() 10 3.341 3.341 3.342 94.34% Castro::advance() 10 3.325 3.325 3.325 93.86% Castro::subcycle_advance_ctu() 10 3.241 3.245 3.247 91.67% Castro::do_advance_ctu() 10 3.241 3.245 3.247 91.67% Castro::construct_ctu_hydro_source() 10 2.455 2.459 2.463 69.53% Gravity::make_radial_gravity() 21 0.3284 0.3474 0.3573 10.08% Gravity::get_new_grav_vector() 11 0.2202 0.2216 0.223 6.29% Castro::construct_old_gravity() 10 0.196 0.2131 0.2228 6.29% Gravity::get_old_grav_vector() 10 0.195 0.2123 0.2223 6.27% AmrLevel::FillPatch() 41 0.2029 0.2115 0.2198 6.21% Castro::construct_new_gravity() 10 0.1966 0.1975 0.1982 5.60% check_for_negative_density() 10 0.03304 0.08169 0.1918 5.41% Castro::initialize_do_advance() 10 0.1685 0.177 0.1898 5.36% FillPatchIterator::Initialize 41 0.1654 0.1751 0.1814 5.12% Amr::init() 1 0.1748 0.1749 0.1749 4.94% Amr::initialInit() 1 0.1605 0.1608 0.1609 4.54% FillPatchIterator::FillFromLevel0() 41 0.1184 0.1296 0.1383 3.90% FillPatchSingleLevel 41 0.1183 0.1295 0.1382 3.90% Amr::InitializeInit() 1 0.05893 0.09729 0.1331 3.76% Amr::defBaseLevel() 1 0.05893 0.09728 0.1331 3.76% Castro::expand_state() 10 0.1133 0.1203 0.1312 3.70% Castro::clean_state() 62 0.1162 0.1176 0.1202 3.39% Castro::initData() 1 0.04298 0.08135 0.1174 3.31% Castro::do_old_sources() 10 0.09503 0.1006 0.1049 2.96% Amr::FinalizeInit() 1 0.0278 0.06348 0.1019 2.88% FabArray::ParallelCopy() 41 0.08168 0.09128 0.1002 2.83% amrex::Copy() 193 0.08097 0.08719 0.09928 2.80% Castro::estTimeStep() 21 0.02206 0.06098 0.09739 2.75% FabArray::setVal() 143 0.07182 0.07498 0.08207 2.32% Castro::initialize_advance() 10 0.07394 0.07626 0.08103 2.29% Castro::computeInitialDt() 2 0.002199 0.03798 0.07637 2.16% Castro::computeTemp() 63 0.06774 0.06882 0.07128 2.01% Castro::do_new_sources() 10 0.06301 0.06577 0.06879 1.94% FabArray::ParallelCopy_finish() 41 0.04052 0.04873 0.05564 1.57% Castro::reset_internal_energy(MultiFab) 63 0.0481 0.04913 0.05089 1.44% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04884 0.05057 1.43% FabArray::ParallelCopy_nowait() 41 0.04037 0.04246 0.04451 1.26% StateDataPhysBCFunct::() 41 0.03583 0.03812 0.04292 1.21% StateData::FillBoundary(geom) 41 0.03569 0.03799 0.0428 1.21% Castro::normalize_species() 62 0.04102 0.04203 0.04258 1.20% Castro::construct_new_source() 50 0.03005 0.03105 0.03247 0.92% Gravity::interpolate_monopole_grav() 21 0.02824 0.02883 0.02919 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02433 0.02563 0.72% Castro::post_init() 1 0.02472 0.02501 0.02524 0.71% Amr::writePlotFile() 2 0.02363 0.02378 0.024 0.68% Castro::finalize_do_advance() 10 0.01216 0.01515 0.01762 0.50% Castro::post_timestep() 10 0.01589 0.01615 0.0166 0.47% Castro::check_for_nan() 20 0.01116 0.01304 0.0158 0.45% MultiFab::contains_nan() 20 0.01114 0.01302 0.01578 0.45% VisMF::Write(FabArray) 2 0.01187 0.01235 0.01463 0.41% Castro::apply_source_to_state() 20 0.01322 0.01363 0.0139 0.39% FabArray::Saxpy() 20 0.01318 0.01359 0.01386 0.39% FabArray::setDomainBndry() 41 0.009825 0.01218 0.01322 0.37% Castro::Castro() 1 0.01025 0.01059 0.01152 0.33% Castro::construct_old_source() 50 0.00947 0.01025 0.01087 0.31% Castro::construct_old_gravity_source() 10 0.009415 0.01018 0.01079 0.30% Castro::computeNewDt() 9 0.009138 0.009148 0.009156 0.26% Castro::initMFs() 1 0.006054 0.006384 0.00808 0.23% Castro::enforce_min_density() 62 0.007245 0.007502 0.007881 0.22% AmrLevel::AmrLevel(dm) 1 0.005086 0.0052 0.005756 0.16% StateData::define() 4 0.005057 0.005172 0.005726 0.16% Castro::swap_state_time_levels() 10 0.003238 0.004308 0.004482 0.13% Castro::finalize_advance() 10 0.003191 0.003293 0.003473 0.10% Castro::buildMetrics() 1 0.001545 0.001603 0.001823 0.05% Castro::post_regrid() 1 0.00154 0.001611 0.001668 0.05% Amr::InitAmr() 1 0.0002604 0.0002884 0.0004028 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.191e-05 0.0001173 0.0001436 0.00% DistributionMapping::LeastUsedCPUs() 1 7.435e-06 0.0001119 0.0001365 0.00% Castro::enforce_consistent_e() 1 7.991e-05 8.522e-05 9.361e-05 0.00% FabArrayBase::getCPC() 41 6.814e-05 7.63e-05 8.655e-05 0.00% Amr::writeSmallPlotFile() 1 2.862e-05 5.31e-05 7.193e-05 0.00% FabArrayBase::CPC::define() 2 2.26e-05 2.711e-05 3.404e-05 0.00% Castro::enforce_speed_limit() 62 2.656e-05 2.919e-05 3.254e-05 0.00% Gravity::swapTimeLevels() 10 1.277e-05 1.523e-05 1.829e-05 0.00% Gravity::set_mass_offset() 10 8.664e-06 1.056e-05 1.384e-05 0.00% Amr::initSubcycle() 1 8.51e-06 9.159e-06 1.002e-05 0.00% Castro::FluxRegCrseInit 10 5.27e-06 7.641e-06 9.025e-06 0.00% Castro::create_source_corrector() 10 7.452e-06 7.882e-06 8.335e-06 0.00% Castro::retry_advance_ctu() 10 5.992e-06 6.971e-06 7.739e-06 0.00% Castro::FluxRegFineAdd() 10 1.954e-06 2.347e-06 2.73e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.011e-06 1.285e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 32 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-5-g87556458d867) finalized