MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-6-gd197c8f5db9e) initialized Starting run at 05:25:05 UTC on 2023-10-06. Successfully read inputs file ... Castro git describe: 23.10-7-g9701338cc AMReX git describe: 23.10-6-gd197c8f5d Microphysics git describe: 23.10-5-g0ad0ab25 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014847328 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.392011713 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350783458 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333812944 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333030375 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36014513 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340275528 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317342732 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.320437005 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.318938577 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31954287 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009623596 seconds Ending run at 05:25:09 UTC on 2023-10-06. Run time = 3.608254093 Run time without initialization = 3.401718165 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.608 ... 3.608 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2903 2.3573 2.4096 66.78% Gravity::make_radial_gravity() 21 0.322 0.3284 0.3402 9.43% check_for_negative_density() 10 0.09231 0.1415 0.2111 5.85% Castro::initData() 1 0.03867 0.08774 0.1338 3.71% Castro::estTimeStep() 21 0.02353 0.07711 0.1198 3.32% amrex::Copy() 193 0.06535 0.07697 0.08482 2.35% FabArray::setVal() 143 0.06377 0.0714 0.08168 2.26% FabArray::ParallelCopy_finish() 41 0.03291 0.04801 0.06801 1.88% Castro::reset_internal_energy(Fab) 1008 0.04752 0.0488 0.05154 1.43% Castro::normalize_species() 62 0.04076 0.04173 0.04274 1.18% FabArray::ParallelCopy_nowait() 41 0.03479 0.04035 0.04243 1.18% StateData::FillBoundary(geom) 41 0.03626 0.03806 0.04033 1.12% FillPatchIterator::Initialize 41 0.02799 0.03153 0.03403 0.94% Gravity::interpolate_monopole_grav() 21 0.028 0.02818 0.02842 0.79% Castro::construct_new_gravity_source() 10 0.02231 0.02445 0.02763 0.77% Castro::computeTemp() 63 0.01798 0.01968 0.0206 0.57% Castro::initialize_do_advance() 10 0.01213 0.01718 0.02007 0.56% VisMF::Write(FabArray) 2 0.01237 0.01293 0.01542 0.43% Castro::initialize_advance() 10 0.008558 0.01147 0.01468 0.41% FabArray::Saxpy() 20 0.01112 0.01284 0.01357 0.38% FabArray::setDomainBndry() 41 0.008859 0.01122 0.01241 0.34% MultiFab::contains_nan() 20 0.01055 0.01153 0.01235 0.34% Castro::construct_old_gravity_source() 10 0.007271 0.009845 0.01036 0.29% Castro::initMFs() 1 0.00605 0.007125 0.009709 0.27% Amr::writePlotFile() 2 0.006426 0.008714 0.009278 0.26% Castro::enforce_min_density() 62 0.007182 0.007432 0.007648 0.21% StateData::define() 4 0.005011 0.005799 0.007631 0.21% Castro::construct_new_source() 50 0.005683 0.00625 0.006486 0.18% Gravity::get_new_grav_vector() 11 0.002711 0.00375 0.005558 0.15% main() 1 0.003362 0.004517 0.005087 0.14% Castro::swap_state_time_levels() 10 0.003076 0.004052 0.004295 0.12% Amr::coarseTimeStep() 10 0.002743 0.003219 0.003638 0.10% Gravity::get_old_grav_vector() 10 0.001699 0.001995 0.002372 0.07% Castro::buildMetrics() 1 0.001426 0.001652 0.002182 0.06% Castro::finalize_do_advance() 10 0.0005834 0.0009995 0.001221 0.03% AmrLevel::FillPatch() 41 0.0007908 0.0009454 0.001044 0.03% Amr::InitAmr() 1 0.0002585 0.0003426 0.0006253 0.02% Amr::timeStep() 10 0.0001882 0.0002472 0.0004983 0.01% DistributionMapping::LeastUsedCPUs() 1 9.801e-06 0.0003153 0.0003999 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000285 0.0003023 0.0003184 0.01% Castro::clean_state() 62 0.0001582 0.0001812 0.000224 0.01% Castro::do_advance_ctu() 10 0.000149 0.0001686 0.0001824 0.01% Castro::enforce_consistent_e() 1 8.265e-05 9.715e-05 0.0001371 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001071 0.0001124 0.0001213 0.00% StateDataPhysBCFunct::() 41 9.923e-05 0.0001106 0.0001197 0.00% Castro::finalize_advance() 10 8.999e-05 0.0001024 0.0001115 0.00% Castro::do_old_sources() 10 8.438e-05 9.899e-05 0.0001086 0.00% Amr::FinalizeInit() 1 3.885e-06 1.663e-05 9.351e-05 0.00% FabArray::ParallelCopy() 41 7.091e-05 8.072e-05 8.901e-05 0.00% FillPatchSingleLevel 41 6.301e-05 7.127e-05 8.768e-05 0.00% Castro::Castro() 1 6.372e-05 7.694e-05 8.516e-05 0.00% Castro::construct_old_source() 50 5.665e-05 7.186e-05 8.249e-05 0.00% Castro::do_new_sources() 10 5.96e-05 6.942e-05 8.202e-05 0.00% Castro::apply_source_to_state() 20 4.006e-05 5.049e-05 7.555e-05 0.00% Amr::writeSmallPlotFile() 1 3.131e-05 5.251e-05 6.475e-05 0.00% Castro::subcycle_advance_ctu() 10 4.33e-05 5.151e-05 6.236e-05 0.00% Castro::construct_old_gravity() 10 4.102e-05 4.809e-05 5.813e-05 0.00% FabArrayBase::getCPC() 41 4.594e-05 5.105e-05 5.694e-05 0.00% Castro::construct_new_gravity() 10 3.498e-05 4.464e-05 5.222e-05 0.00% Castro::advance() 10 4.203e-05 4.557e-05 5.135e-05 0.00% Amr::defBaseLevel() 1 2.444e-05 3.313e-05 3.756e-05 0.00% Castro::enforce_speed_limit() 62 2.597e-05 2.876e-05 3.34e-05 0.00% Castro::check_for_nan() 20 2.299e-05 2.617e-05 3.312e-05 0.00% FabArrayBase::CPC::define() 2 2.288e-05 2.687e-05 3.2e-05 0.00% Castro::expand_state() 10 2.252e-05 2.52e-05 2.807e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.817e-05 2.246e-05 2.746e-05 0.00% Castro::post_timestep() 10 1.385e-05 1.604e-05 2.089e-05 0.00% Gravity::swapTimeLevels() 10 1.193e-05 1.415e-05 1.696e-05 0.00% Amr::initSubcycle() 1 8.674e-06 1.096e-05 1.677e-05 0.00% Castro::computeNewDt() 9 9.534e-06 1.209e-05 1.542e-05 0.00% Gravity::set_mass_offset() 10 1.006e-05 1.178e-05 1.35e-05 0.00% Amr::initialInit() 1 1.469e-06 3.755e-06 9.843e-06 0.00% Castro::create_source_corrector() 10 7.567e-06 8.373e-06 9.138e-06 0.00% Castro::retry_advance_ctu() 10 6.823e-06 7.714e-06 8.574e-06 0.00% Castro::FluxRegCrseInit 10 6.65e-06 7.211e-06 7.806e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.124e-06 5.992e-06 7.636e-06 0.00% Castro::post_regrid() 1 1.727e-06 5.531e-06 7.574e-06 0.00% Amr::InitializeInit() 1 1.841e-06 2.782e-06 6.464e-06 0.00% Castro::post_init() 1 3.421e-06 4.111e-06 6.15e-06 0.00% Castro::computeInitialDt() 2 4.071e-06 4.973e-06 5.57e-06 0.00% Castro::FluxRegFineAdd() 10 1.933e-06 2.318e-06 3.1e-06 0.00% Amr::init() 1 1.863e-06 2.515e-06 2.904e-06 0.00% DistributionMapping::Distribute() 1 1.055e-06 1.321e-06 1.441e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.608 3.608 100.00% Amr::coarseTimeStep() 10 3.387 3.387 3.387 93.87% Amr::timeStep() 10 3.373 3.373 3.374 93.50% Castro::advance() 10 3.357 3.357 3.358 93.05% Castro::subcycle_advance_ctu() 10 3.274 3.279 3.285 91.05% Castro::do_advance_ctu() 10 3.274 3.279 3.285 91.04% Castro::construct_ctu_hydro_source() 10 2.516 2.521 2.524 69.95% Gravity::make_radial_gravity() 21 0.3379 0.3443 0.3537 9.80% Gravity::get_new_grav_vector() 11 0.2298 0.2324 0.2346 6.50% AmrLevel::FillPatch() 41 0.1856 0.2 0.2159 5.98% check_for_negative_density() 10 0.09231 0.1415 0.2111 5.85% Amr::init() 1 0.2057 0.206 0.2061 5.71% Castro::construct_old_gravity() 10 0.1882 0.1946 0.2033 5.63% Gravity::get_old_grav_vector() 10 0.1876 0.194 0.2027 5.62% Castro::construct_new_gravity() 10 0.1981 0.1999 0.2011 5.57% Amr::initialInit() 1 0.1907 0.1913 0.1916 5.31% FillPatchIterator::Initialize 41 0.155 0.1696 0.1837 5.09% Castro::initialize_do_advance() 10 0.1584 0.1678 0.1776 4.92% Amr::InitializeInit() 1 0.05821 0.1091 0.1545 4.28% Amr::defBaseLevel() 1 0.0582 0.1091 0.1545 4.28% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1269 0.1403 3.89% FillPatchSingleLevel 41 0.1112 0.1268 0.1401 3.88% Castro::initData() 1 0.04258 0.09203 0.1378 3.82% Amr::FinalizeInit() 1 0.03668 0.08216 0.1331 3.69% Castro::expand_state() 10 0.1058 0.1135 0.1238 3.43% Castro::clean_state() 62 0.1147 0.1171 0.1216 3.37% Castro::estTimeStep() 21 0.02353 0.07711 0.1198 3.32% FabArray::ParallelCopy() 41 0.07401 0.08852 0.103 2.85% Castro::computeInitialDt() 2 0.002523 0.04789 0.09887 2.74% Castro::do_old_sources() 10 0.08915 0.0943 0.09863 2.73% amrex::Copy() 193 0.06535 0.07697 0.08482 2.35% FabArray::setVal() 143 0.06377 0.0714 0.08168 2.26% Castro::initialize_advance() 10 0.06831 0.07402 0.07971 2.21% Castro::do_new_sources() 10 0.05947 0.06529 0.07371 2.04% Castro::computeTemp() 63 0.06597 0.06879 0.07244 2.01% FabArray::ParallelCopy_finish() 41 0.03291 0.04801 0.06801 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04781 0.04911 0.05184 1.44% Castro::reset_internal_energy(Fab) 1008 0.04752 0.0488 0.05154 1.43% Castro::normalize_species() 62 0.04076 0.04173 0.04274 1.18% FabArray::ParallelCopy_nowait() 41 0.03488 0.04043 0.0425 1.18% StateDataPhysBCFunct::() 41 0.03638 0.03817 0.04043 1.12% StateData::FillBoundary(geom) 41 0.03626 0.03806 0.04033 1.12% Castro::post_init() 1 0.03227 0.03359 0.03423 0.95% Castro::construct_new_source() 50 0.02856 0.0307 0.03405 0.94% Gravity::interpolate_monopole_grav() 21 0.028 0.02818 0.02842 0.79% Castro::construct_new_gravity_source() 10 0.02231 0.02445 0.02763 0.77% Castro::finalize_do_advance() 10 0.0124 0.02108 0.02754 0.76% Amr::writePlotFile() 2 0.02419 0.02446 0.02471 0.68% Castro::post_timestep() 10 0.01588 0.01612 0.01638 0.45% VisMF::Write(FabArray) 2 0.01237 0.01293 0.01542 0.43% Castro::Castro() 1 0.009689 0.01089 0.0137 0.38% Castro::apply_source_to_state() 20 0.01117 0.01289 0.01362 0.38% FabArray::Saxpy() 20 0.01112 0.01284 0.01357 0.38% FabArray::setDomainBndry() 41 0.008859 0.01122 0.01241 0.34% Castro::check_for_nan() 20 0.01059 0.01156 0.01237 0.34% MultiFab::contains_nan() 20 0.01055 0.01153 0.01235 0.34% Castro::construct_old_source() 50 0.007328 0.009917 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007271 0.009845 0.01036 0.29% Castro::initMFs() 1 0.00605 0.007125 0.009709 0.27% Castro::computeNewDt() 9 0.009145 0.009156 0.009162 0.25% AmrLevel::AmrLevel(dm) 1 0.005032 0.005822 0.007657 0.21% Castro::enforce_min_density() 62 0.007182 0.007432 0.007648 0.21% StateData::define() 4 0.005011 0.005799 0.007631 0.21% Castro::finalize_advance() 10 0.003134 0.003562 0.004395 0.12% Castro::swap_state_time_levels() 10 0.003076 0.004052 0.004295 0.12% Castro::post_regrid() 1 0.001534 0.001969 0.002949 0.08% Castro::buildMetrics() 1 0.001545 0.001795 0.002392 0.07% Amr::InitAmr() 1 0.0002672 0.0003536 0.000642 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.532e-05 0.0003226 0.0004085 0.01% DistributionMapping::LeastUsedCPUs() 1 9.801e-06 0.0003153 0.0003999 0.01% Castro::enforce_consistent_e() 1 8.265e-05 9.715e-05 0.0001371 0.00% FabArrayBase::getCPC() 41 6.881e-05 7.792e-05 8.895e-05 0.00% Amr::writeSmallPlotFile() 1 3.131e-05 5.251e-05 6.475e-05 0.00% Castro::enforce_speed_limit() 62 2.597e-05 2.876e-05 3.34e-05 0.00% FabArrayBase::CPC::define() 2 2.288e-05 2.687e-05 3.2e-05 0.00% Gravity::swapTimeLevels() 10 1.193e-05 1.415e-05 1.696e-05 0.00% Amr::initSubcycle() 1 8.674e-06 1.096e-05 1.677e-05 0.00% Gravity::set_mass_offset() 10 1.006e-05 1.178e-05 1.35e-05 0.00% Castro::create_source_corrector() 10 7.567e-06 8.373e-06 9.138e-06 0.00% Castro::retry_advance_ctu() 10 6.823e-06 7.714e-06 8.574e-06 0.00% Castro::FluxRegCrseInit 10 6.65e-06 7.211e-06 7.806e-06 0.00% Castro::FluxRegFineAdd() 10 1.933e-06 2.318e-06 3.1e-06 0.00% DistributionMapping::Distribute() 1 1.055e-06 1.321e-06 1.441e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-6-gd197c8f5db9e) finalized