MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-8-gfd2dfa282a30) initialized Starting run at 16:05:19 UTC on 2023-10-08. Successfully read inputs file ... Castro git describe: 23.10-17-g3d96f8e7e AMReX git describe: 23.10-8-gfd2dfa282 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015364627 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367327036 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349648286 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329060618 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329414486 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330344743 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.367786084 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31539679 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31285412 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31221681 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312985812 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009718585 seconds Ending run at 16:05:23 UTC on 2023-10-08. Run time = 3.54777205 Run time without initialization = 3.342259692 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.547 ... 3.548 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2398 2.3407 2.4032 67.74% Gravity::make_radial_gravity() 21 0.3197 0.3253 0.3408 9.61% check_for_negative_density() 10 0.02279 0.08775 0.1901 5.36% Castro::initData() 1 0.04038 0.08286 0.137 3.86% Castro::estTimeStep() 21 0.02965 0.08308 0.1305 3.68% FabArray::ParallelCopy_finish() 41 0.03293 0.06351 0.1161 3.27% FabArray::setVal() 143 0.05268 0.07074 0.08586 2.42% amrex::Copy() 193 0.06325 0.07651 0.0851 2.40% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04888 0.05316 1.50% Castro::normalize_species() 62 0.04087 0.04227 0.04539 1.28% FabArray::ParallelCopy_nowait() 41 0.0335 0.04047 0.04276 1.21% StateData::FillBoundary(geom) 41 0.03476 0.03759 0.039 1.10% FillPatchIterator::Initialize 41 0.02753 0.03207 0.03808 1.07% Gravity::interpolate_monopole_grav() 21 0.02808 0.02828 0.02877 0.81% Castro::construct_new_gravity_source() 10 0.02134 0.02378 0.02559 0.72% Castro::initialize_do_advance() 10 0.01144 0.01794 0.0229 0.65% Castro::computeTemp() 63 0.01814 0.01941 0.02049 0.58% VisMF::Write(FabArray) 2 0.01271 0.01337 0.01663 0.47% Castro::initialize_advance() 10 0.003807 0.01083 0.01463 0.41% FabArray::Saxpy() 20 0.0106 0.01273 0.01367 0.39% FabArray::setDomainBndry() 41 0.00832 0.01085 0.01231 0.35% MultiFab::contains_nan() 20 0.01074 0.01142 0.01228 0.35% Amr::writePlotFile() 2 0.006676 0.009524 0.01012 0.29% Castro::construct_old_gravity_source() 10 0.006522 0.00937 0.01011 0.28% Castro::enforce_min_density() 62 0.007103 0.007359 0.007608 0.21% Castro::initMFs() 1 0.006335 0.00684 0.007376 0.21% Castro::construct_new_source() 50 0.005545 0.00645 0.006864 0.19% StateData::define() 4 0.005111 0.005469 0.005853 0.16% main() 1 0.003798 0.00442 0.004911 0.14% Castro::swap_state_time_levels() 10 0.002422 0.004172 0.004894 0.14% Gravity::get_new_grav_vector() 11 0.002872 0.003556 0.003995 0.11% Gravity::get_old_grav_vector() 10 0.001463 0.001894 0.002198 0.06% Amr::coarseTimeStep() 10 0.001252 0.00152 0.001935 0.05% Castro::buildMetrics() 1 0.001486 0.001594 0.001701 0.05% Castro::finalize_do_advance() 10 0.0004906 0.001125 0.00139 0.04% AmrLevel::FillPatch() 41 0.0007957 0.0009311 0.001212 0.03% Amr::InitAmr() 1 0.0002562 0.0003006 0.0004003 0.01% Amr::timeStep() 10 0.0001664 0.0002341 0.0003713 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002754 0.0002972 0.0003199 0.01% Castro::do_advance_ctu() 10 0.0001348 0.0001724 0.0002407 0.01% Castro::clean_state() 62 0.000142 0.00016 0.0001761 0.00% DistributionMapping::LeastUsedCPUs() 1 7.879e-06 0.0001038 0.0001452 0.00% FillPatchIterator::FillFromLevel0() 41 9.871e-05 0.0001127 0.0001348 0.00% Castro::finalize_advance() 10 8.693e-05 9.891e-05 0.0001119 0.00% StateDataPhysBCFunct::() 41 8.896e-05 0.0001031 0.0001102 0.00% Castro::advance() 10 3.972e-05 6.417e-05 0.0001086 0.00% Castro::do_old_sources() 10 7.103e-05 9.324e-05 0.0001079 0.00% Castro::enforce_consistent_e() 1 7.579e-05 8.634e-05 0.0001012 0.00% FabArray::ParallelCopy() 41 6.491e-05 7.644e-05 9.251e-05 0.00% Castro::subcycle_advance_ctu() 10 4.239e-05 5.916e-05 8.311e-05 0.00% Castro::Castro() 1 5.969e-05 6.902e-05 8.112e-05 0.00% Amr::FinalizeInit() 1 4.854e-06 1.499e-05 8.102e-05 0.00% Castro::construct_old_source() 50 5.409e-05 6.912e-05 7.867e-05 0.00% Castro::do_new_sources() 10 5.081e-05 6.411e-05 7.332e-05 0.00% Amr::writeSmallPlotFile() 1 2.704e-05 5.354e-05 7.146e-05 0.00% FillPatchSingleLevel 41 6.042e-05 6.618e-05 6.959e-05 0.00% Castro::expand_state() 10 2.131e-05 2.847e-05 6.455e-05 0.00% FabArrayBase::getCPC() 41 3.843e-05 4.733e-05 5.678e-05 0.00% Castro::apply_source_to_state() 20 3.99e-05 4.711e-05 5.36e-05 0.00% Castro::construct_old_gravity() 10 3.91e-05 4.507e-05 5.118e-05 0.00% Castro::construct_new_gravity() 10 3.499e-05 4.086e-05 5.057e-05 0.00% Amr::defBaseLevel() 1 2.336e-05 3.708e-05 4.487e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.763e-05 2.309e-05 3.22e-05 0.00% FabArrayBase::CPC::define() 2 2.268e-05 2.594e-05 3.167e-05 0.00% Castro::enforce_speed_limit() 62 2.384e-05 2.704e-05 2.949e-05 0.00% Castro::check_for_nan() 20 2.187e-05 2.308e-05 2.38e-05 0.00% Castro::post_timestep() 10 1.285e-05 1.532e-05 1.772e-05 0.00% Gravity::swapTimeLevels() 10 1.39e-05 1.491e-05 1.707e-05 0.00% Amr::initSubcycle() 1 9.105e-06 1.043e-05 1.467e-05 0.00% Gravity::set_mass_offset() 10 9.752e-06 1.15e-05 1.433e-05 0.00% Castro::computeNewDt() 9 8.642e-06 1.041e-05 1.214e-05 0.00% Castro::post_regrid() 1 2.044e-06 4.545e-06 1.124e-05 0.00% Amr::initialInit() 1 1.189e-06 3.59e-06 1.097e-05 0.00% Castro::FluxRegCrseInit 10 6.384e-06 8.184e-06 9.905e-06 0.00% Castro::create_source_corrector() 10 6.092e-06 7.868e-06 8.976e-06 0.00% Castro::retry_advance_ctu() 10 6.458e-06 7.151e-06 7.695e-06 0.00% Castro::computeInitialDt() 2 4.636e-06 5.287e-06 6.727e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.666e-06 5.148e-06 6.725e-06 0.00% Castro::post_init() 1 3.072e-06 3.767e-06 5.105e-06 0.00% Amr::InitializeInit() 1 1.965e-06 2.564e-06 4.966e-06 0.00% Amr::init() 1 2.27e-06 2.547e-06 2.962e-06 0.00% Castro::FluxRegFineAdd() 10 1.988e-06 2.225e-06 2.478e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.245e-06 1.51e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.547 3.548 100.00% Amr::coarseTimeStep() 10 3.328 3.328 3.328 93.80% Amr::timeStep() 10 3.315 3.316 3.316 93.47% Castro::advance() 10 3.299 3.3 3.3 93.02% Castro::subcycle_advance_ctu() 10 3.204 3.223 3.247 91.52% Castro::do_advance_ctu() 10 3.203 3.223 3.247 91.51% Castro::construct_ctu_hydro_source() 10 2.446 2.45 2.452 69.11% Gravity::make_radial_gravity() 21 0.3357 0.3414 0.354 9.98% AmrLevel::FillPatch() 41 0.1775 0.2146 0.2452 6.91% Gravity::get_new_grav_vector() 11 0.2216 0.2229 0.2234 6.30% FillPatchIterator::Initialize 41 0.1498 0.1849 0.2224 6.27% Castro::construct_old_gravity() 10 0.1975 0.2024 0.2135 6.02% Gravity::get_old_grav_vector() 10 0.1969 0.2016 0.213 6.00% Amr::init() 1 0.205 0.2051 0.2051 5.78% Castro::construct_new_gravity() 10 0.1956 0.1962 0.1967 5.54% Castro::initialize_do_advance() 10 0.1589 0.1812 0.1946 5.49% check_for_negative_density() 10 0.02279 0.08775 0.1901 5.36% Amr::initialInit() 1 0.1891 0.1894 0.1896 5.34% FillPatchIterator::FillFromLevel0() 41 0.1127 0.142 0.1848 5.21% FillPatchSingleLevel 41 0.1125 0.1419 0.1847 5.21% Amr::InitializeInit() 1 0.05995 0.1032 0.1588 4.48% Amr::defBaseLevel() 1 0.05995 0.1032 0.1588 4.48% FabArray::ParallelCopy() 41 0.07497 0.1041 0.1497 4.22% Castro::expand_state() 10 0.1005 0.1261 0.1472 4.15% Castro::initData() 1 0.04465 0.08688 0.1413 3.98% Castro::estTimeStep() 21 0.02965 0.08308 0.1305 3.68% Amr::FinalizeInit() 1 0.03081 0.08613 0.1295 3.65% Castro::clean_state() 62 0.1148 0.1175 0.1248 3.52% FabArray::ParallelCopy_finish() 41 0.03293 0.06351 0.1161 3.27% Castro::do_old_sources() 10 0.09208 0.09654 0.1017 2.87% Castro::computeInitialDt() 2 0.002512 0.05807 0.1013 2.85% Castro::initialize_advance() 10 0.04902 0.07355 0.09287 2.62% FabArray::setVal() 143 0.05268 0.07074 0.08586 2.42% amrex::Copy() 193 0.06325 0.07651 0.0851 2.40% Castro::computeTemp() 63 0.06543 0.06859 0.07266 2.05% Castro::do_new_sources() 10 0.05957 0.06375 0.06859 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04728 0.04918 0.05346 1.51% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04888 0.05316 1.50% Castro::normalize_species() 62 0.04087 0.04227 0.04539 1.28% FabArray::ParallelCopy_nowait() 41 0.03359 0.04055 0.04282 1.21% StateDataPhysBCFunct::() 41 0.03487 0.03769 0.03909 1.10% StateData::FillBoundary(geom) 41 0.03476 0.03759 0.039 1.10% Castro::construct_new_source() 50 0.02689 0.03023 0.03245 0.91% Gravity::interpolate_monopole_grav() 21 0.02808 0.02828 0.02877 0.81% Castro::post_init() 1 0.0273 0.02763 0.02785 0.78% Amr::writePlotFile() 2 0.02525 0.02549 0.02569 0.72% Castro::construct_new_gravity_source() 10 0.02134 0.02378 0.02559 0.72% Castro::finalize_do_advance() 10 0.01145 0.01712 0.02072 0.58% VisMF::Write(FabArray) 2 0.01271 0.01337 0.01663 0.47% Castro::post_timestep() 10 0.01564 0.01578 0.01602 0.45% Castro::apply_source_to_state() 20 0.01065 0.01278 0.01372 0.39% FabArray::Saxpy() 20 0.0106 0.01273 0.01367 0.39% FabArray::setDomainBndry() 41 0.00832 0.01085 0.01231 0.35% Castro::check_for_nan() 20 0.01077 0.01144 0.0123 0.35% MultiFab::contains_nan() 20 0.01074 0.01142 0.01228 0.35% Castro::Castro() 1 0.009932 0.01071 0.01145 0.32% Castro::construct_old_source() 50 0.006576 0.009439 0.01017 0.29% Castro::construct_old_gravity_source() 10 0.006522 0.00937 0.01011 0.28% Castro::computeNewDt() 9 0.009025 0.009035 0.009046 0.25% Castro::enforce_min_density() 62 0.007103 0.007359 0.007608 0.21% Castro::initMFs() 1 0.006335 0.00684 0.007376 0.21% AmrLevel::AmrLevel(dm) 1 0.005131 0.005492 0.005878 0.17% StateData::define() 4 0.005111 0.005469 0.005853 0.16% Castro::swap_state_time_levels() 10 0.002422 0.004172 0.004894 0.14% Castro::finalize_advance() 10 0.00309 0.003293 0.003526 0.10% Castro::post_regrid() 1 0.001544 0.0017 0.002125 0.06% Castro::buildMetrics() 1 0.001603 0.001732 0.001861 0.05% Amr::InitAmr() 1 0.0002653 0.000311 0.000415 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.251e-05 0.0001102 0.0001533 0.00% DistributionMapping::LeastUsedCPUs() 1 7.879e-06 0.0001038 0.0001452 0.00% Castro::enforce_consistent_e() 1 7.579e-05 8.634e-05 0.0001012 0.00% FabArrayBase::getCPC() 41 6.196e-05 7.327e-05 8.615e-05 0.00% Amr::writeSmallPlotFile() 1 2.704e-05 5.354e-05 7.146e-05 0.00% FabArrayBase::CPC::define() 2 2.268e-05 2.594e-05 3.167e-05 0.00% Castro::enforce_speed_limit() 62 2.384e-05 2.704e-05 2.949e-05 0.00% Gravity::swapTimeLevels() 10 1.39e-05 1.491e-05 1.707e-05 0.00% Amr::initSubcycle() 1 9.105e-06 1.043e-05 1.467e-05 0.00% Gravity::set_mass_offset() 10 9.752e-06 1.15e-05 1.433e-05 0.00% Castro::FluxRegCrseInit 10 6.384e-06 8.184e-06 9.905e-06 0.00% Castro::create_source_corrector() 10 6.092e-06 7.868e-06 8.976e-06 0.00% Castro::retry_advance_ctu() 10 6.458e-06 7.151e-06 7.695e-06 0.00% Castro::FluxRegFineAdd() 10 1.988e-06 2.225e-06 2.478e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.245e-06 1.51e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-8-gfd2dfa282a30) finalized