MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-8-gfd2dfa282a30) initialized Starting run at 12:19:45 UTC on 2023-10-08. Successfully read inputs file ... Castro git describe: 23.10-15-g80d1947e4 AMReX git describe: 23.10-8-gfd2dfa282 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014974103 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358842641 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.37710872 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338904312 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331612854 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351887154 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346483694 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309973261 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309577691 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309523121 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309823624 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009782251 seconds Ending run at 12:19:48 UTC on 2023-10-08. Run time = 3.538886475 Run time without initialization = 3.358531334 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.538 ... 3.539 ... 3.539 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2945 2.3371 2.3642 66.81% Gravity::make_radial_gravity() 21 0.3253 0.3369 0.3477 9.83% Castro::estTimeStep() 21 0.0322 0.08091 0.1322 3.74% Castro::initData() 1 0.03834 0.07722 0.1133 3.20% check_for_negative_density() 10 0.04089 0.06594 0.1106 3.13% amrex::Copy() 193 0.0654 0.07851 0.08767 2.48% FabArray::ParallelCopy_finish() 41 0.03595 0.06276 0.08629 2.44% FabArray::setVal() 143 0.06193 0.07248 0.08427 2.38% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04862 0.05016 1.42% Castro::normalize_species() 62 0.04087 0.04245 0.04541 1.28% FabArray::ParallelCopy_nowait() 41 0.03521 0.04139 0.04528 1.28% StateData::FillBoundary(geom) 41 0.03605 0.03863 0.04083 1.15% Castro::construct_new_gravity_source() 10 0.02152 0.02697 0.04048 1.14% FillPatchIterator::Initialize 41 0.02762 0.03383 0.03966 1.12% Gravity::interpolate_monopole_grav() 21 0.02804 0.02837 0.02888 0.82% Castro::initialize_do_advance() 10 0.01163 0.01808 0.02232 0.63% Castro::computeTemp() 63 0.01936 0.01998 0.02095 0.59% VisMF::Write(FabArray) 2 0.01174 0.01267 0.01552 0.44% Castro::initialize_advance() 10 0.00911 0.01141 0.01511 0.43% FabArray::Saxpy() 20 0.01028 0.01285 0.01362 0.38% FabArray::setDomainBndry() 41 0.009037 0.01173 0.01291 0.36% MultiFab::contains_nan() 20 0.01107 0.01162 0.01264 0.36% Amr::writePlotFile() 2 0.006936 0.009989 0.01148 0.32% Castro::construct_old_gravity_source() 10 0.00708 0.009474 0.0101 0.29% Castro::enforce_min_density() 62 0.007107 0.007406 0.007945 0.22% Castro::initMFs() 1 0.006183 0.006617 0.007895 0.22% Castro::construct_new_source() 50 0.005892 0.00609 0.006482 0.18% StateData::define() 4 0.005085 0.005283 0.005818 0.16% Amr::coarseTimeStep() 10 0.001246 0.003279 0.004541 0.13% Castro::swap_state_time_levels() 10 0.002972 0.004084 0.004421 0.12% main() 1 0.003571 0.004096 0.004325 0.12% Gravity::get_new_grav_vector() 11 0.00274 0.003597 0.003998 0.11% Gravity::get_old_grav_vector() 10 0.001529 0.002026 0.002332 0.07% Castro::buildMetrics() 1 0.00143 0.001499 0.001679 0.05% Castro::finalize_do_advance() 10 0.000377 0.001085 0.001423 0.04% AmrLevel::FillPatch() 41 0.0006817 0.0009604 0.001267 0.04% Amr::InitAmr() 1 0.0002756 0.0003042 0.000469 0.01% Amr::timeStep() 10 0.000177 0.0002418 0.0004106 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002834 0.0002938 0.0003112 0.01% Castro::do_advance_ctu() 10 0.0001475 0.000179 0.0002047 0.01% DistributionMapping::LeastUsedCPUs() 1 7.99e-06 0.0001732 0.0001999 0.01% Castro::clean_state() 62 0.0001492 0.0001584 0.0001738 0.00% StateDataPhysBCFunct::() 41 9.883e-05 0.00011 0.00013 0.00% Castro::finalize_advance() 10 7.814e-05 0.000103 0.0001269 0.00% Castro::do_old_sources() 10 8.438e-05 9.793e-05 0.0001253 0.00% FillPatchIterator::FillFromLevel0() 41 9.661e-05 0.0001089 0.0001173 0.00% Castro::enforce_consistent_e() 1 8.077e-05 8.806e-05 0.0001059 0.00% FabArray::ParallelCopy() 41 7.036e-05 8.044e-05 9.471e-05 0.00% Amr::FinalizeInit() 1 4.078e-06 1.552e-05 8.769e-05 0.00% Castro::apply_source_to_state() 20 3.85e-05 5.041e-05 8.358e-05 0.00% Castro::Castro() 1 4.715e-05 6.073e-05 8.064e-05 0.00% Castro::construct_old_source() 50 5.884e-05 6.902e-05 8.025e-05 0.00% FillPatchSingleLevel 41 6.416e-05 7.038e-05 7.609e-05 0.00% Castro::do_new_sources() 10 5.807e-05 6.419e-05 7.181e-05 0.00% Castro::subcycle_advance_ctu() 10 4.071e-05 4.787e-05 6.179e-05 0.00% Castro::advance() 10 3.714e-05 4.366e-05 5.995e-05 0.00% Amr::writeSmallPlotFile() 1 2.894e-05 3.97e-05 5.876e-05 0.00% Castro::construct_new_gravity() 10 3.5e-05 4.219e-05 5.646e-05 0.00% Castro::construct_old_gravity() 10 4.274e-05 4.928e-05 5.594e-05 0.00% FabArrayBase::getCPC() 41 3.919e-05 4.639e-05 4.975e-05 0.00% Castro::retry_advance_ctu() 10 6.083e-06 1.205e-05 4.354e-05 0.00% Amr::defBaseLevel() 1 2.505e-05 3.273e-05 3.955e-05 0.00% Castro::expand_state() 10 2.066e-05 2.67e-05 3.799e-05 0.00% Castro::enforce_speed_limit() 62 2.748e-05 3.033e-05 3.752e-05 0.00% FabArrayBase::CPC::define() 2 2.262e-05 2.6e-05 3.594e-05 0.00% Castro::check_for_nan() 20 2.266e-05 2.418e-05 2.521e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.564e-05 1.923e-05 2.391e-05 0.00% Castro::post_timestep() 10 1.382e-05 1.682e-05 2.323e-05 0.00% Gravity::swapTimeLevels() 10 1.263e-05 1.507e-05 1.865e-05 0.00% Castro::FluxRegCrseInit 10 6.229e-06 7.981e-06 1.402e-05 0.00% Gravity::set_mass_offset() 10 7.997e-06 1.12e-05 1.361e-05 0.00% Castro::computeNewDt() 9 8.71e-06 1.013e-05 1.185e-05 0.00% Amr::initSubcycle() 1 8.491e-06 9.357e-06 1.046e-05 0.00% Castro::create_source_corrector() 10 6.908e-06 8.073e-06 9.583e-06 0.00% Amr::initialInit() 1 1.153e-06 3.211e-06 8.247e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.707e-06 5.675e-06 7.18e-06 0.00% Amr::InitializeInit() 1 1.996e-06 2.641e-06 5.28e-06 0.00% Castro::computeInitialDt() 2 3.39e-06 4.51e-06 4.951e-06 0.00% Castro::post_init() 1 2.858e-06 3.437e-06 4.281e-06 0.00% Castro::post_regrid() 1 1.974e-06 2.85e-06 3.604e-06 0.00% Amr::init() 1 1.982e-06 2.409e-06 2.946e-06 0.00% Castro::FluxRegFineAdd() 10 2.012e-06 2.411e-06 2.836e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.193e-06 1.347e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.539 3.539 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 94.51% Amr::timeStep() 10 3.329 3.33 3.332 94.16% Castro::advance() 10 3.313 3.314 3.315 93.67% Castro::subcycle_advance_ctu() 10 3.222 3.234 3.242 91.60% Castro::do_advance_ctu() 10 3.222 3.234 3.242 91.60% Castro::construct_ctu_hydro_source() 10 2.422 2.424 2.429 68.65% Gravity::make_radial_gravity() 21 0.343 0.354 0.3616 10.22% Gravity::get_new_grav_vector() 11 0.2336 0.2365 0.24 6.78% AmrLevel::FillPatch() 41 0.2048 0.2198 0.2332 6.59% Castro::construct_new_gravity() 10 0.2056 0.2088 0.2127 6.01% Castro::construct_old_gravity() 10 0.1957 0.2042 0.2087 5.90% Gravity::get_old_grav_vector() 10 0.1946 0.2034 0.2081 5.88% FillPatchIterator::Initialize 41 0.1708 0.1888 0.2009 5.68% Castro::initialize_do_advance() 10 0.1716 0.1835 0.1954 5.52% Amr::init() 1 0.1797 0.1799 0.1799 5.08% Amr::initialInit() 1 0.1643 0.1644 0.1646 4.65% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1432 0.1609 4.55% FillPatchSingleLevel 41 0.1182 0.1431 0.1608 4.54% Castro::expand_state() 10 0.1136 0.1279 0.1408 3.98% Amr::InitializeInit() 1 0.05816 0.09738 0.1332 3.76% Amr::defBaseLevel() 1 0.05816 0.09738 0.1332 3.76% Castro::estTimeStep() 21 0.0322 0.08091 0.1322 3.74% Castro::clean_state() 62 0.1141 0.118 0.124 3.50% FabArray::ParallelCopy() 41 0.07716 0.1043 0.1217 3.44% Castro::initData() 1 0.04249 0.0813 0.1175 3.32% check_for_negative_density() 10 0.04089 0.06594 0.1106 3.13% Amr::FinalizeInit() 1 0.03131 0.06706 0.1061 3.00% Castro::do_old_sources() 10 0.09202 0.09498 0.09802 2.77% Castro::initialize_advance() 10 0.06852 0.07579 0.08835 2.50% amrex::Copy() 193 0.0654 0.07851 0.08767 2.48% Castro::do_new_sources() 10 0.05777 0.06785 0.08659 2.45% FabArray::ParallelCopy_finish() 41 0.03595 0.06276 0.08629 2.44% FabArray::setVal() 143 0.06193 0.07248 0.08427 2.38% Castro::computeInitialDt() 2 0.002314 0.03808 0.07733 2.19% Castro::computeTemp() 63 0.0665 0.0689 0.07141 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04695 0.04892 0.05046 1.43% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04862 0.05016 1.42% Castro::finalize_do_advance() 10 0.01738 0.03419 0.04772 1.35% Castro::construct_new_source() 50 0.02762 0.03306 0.04696 1.33% Castro::normalize_species() 62 0.04087 0.04245 0.04541 1.28% FabArray::ParallelCopy_nowait() 41 0.03528 0.04146 0.04535 1.28% StateDataPhysBCFunct::() 41 0.03616 0.03874 0.04093 1.16% StateData::FillBoundary(geom) 41 0.03605 0.03863 0.04083 1.15% Castro::construct_new_gravity_source() 10 0.02152 0.02697 0.04048 1.14% Castro::post_init() 1 0.02841 0.02862 0.0289 0.82% Gravity::interpolate_monopole_grav() 21 0.02804 0.02837 0.02888 0.82% Amr::writePlotFile() 2 0.02499 0.02531 0.02553 0.72% Castro::post_timestep() 10 0.01562 0.01623 0.01727 0.49% VisMF::Write(FabArray) 2 0.01174 0.01267 0.01552 0.44% Castro::apply_source_to_state() 20 0.01032 0.0129 0.01366 0.39% FabArray::Saxpy() 20 0.01028 0.01285 0.01362 0.38% FabArray::setDomainBndry() 41 0.009037 0.01173 0.01291 0.36% Castro::check_for_nan() 20 0.0111 0.01164 0.01266 0.36% MultiFab::contains_nan() 20 0.01107 0.01162 0.01264 0.36% Castro::Castro() 1 0.01027 0.01057 0.01142 0.32% Castro::construct_old_source() 50 0.007139 0.009543 0.01017 0.29% Castro::construct_old_gravity_source() 10 0.00708 0.009474 0.0101 0.29% Castro::computeNewDt() 9 0.00973 0.009735 0.009742 0.28% Castro::enforce_min_density() 62 0.007107 0.007406 0.007945 0.22% Castro::initMFs() 1 0.006183 0.006617 0.007895 0.22% AmrLevel::AmrLevel(dm) 1 0.005104 0.005303 0.005842 0.17% StateData::define() 4 0.005085 0.005283 0.005818 0.16% Castro::finalize_advance() 10 0.002931 0.00374 0.004716 0.13% Castro::swap_state_time_levels() 10 0.002972 0.004084 0.004421 0.12% Castro::post_regrid() 1 0.001523 0.00164 0.001999 0.06% Castro::buildMetrics() 1 0.001556 0.001637 0.001841 0.05% Amr::InitAmr() 1 0.0002841 0.0003135 0.0004793 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.322e-05 0.0001801 0.0002078 0.01% DistributionMapping::LeastUsedCPUs() 1 7.99e-06 0.0001732 0.0001999 0.01% Castro::enforce_consistent_e() 1 8.077e-05 8.806e-05 0.0001059 0.00% FabArrayBase::getCPC() 41 6.294e-05 7.239e-05 8.289e-05 0.00% Amr::writeSmallPlotFile() 1 2.894e-05 3.97e-05 5.876e-05 0.00% Castro::retry_advance_ctu() 10 6.083e-06 1.205e-05 4.354e-05 0.00% Castro::enforce_speed_limit() 62 2.748e-05 3.033e-05 3.752e-05 0.00% FabArrayBase::CPC::define() 2 2.262e-05 2.6e-05 3.594e-05 0.00% Gravity::swapTimeLevels() 10 1.263e-05 1.507e-05 1.865e-05 0.00% Castro::FluxRegCrseInit 10 6.229e-06 7.981e-06 1.402e-05 0.00% Gravity::set_mass_offset() 10 7.997e-06 1.12e-05 1.361e-05 0.00% Amr::initSubcycle() 1 8.491e-06 9.357e-06 1.046e-05 0.00% Castro::create_source_corrector() 10 6.908e-06 8.073e-06 9.583e-06 0.00% Castro::FluxRegFineAdd() 10 2.012e-06 2.411e-06 2.836e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.193e-06 1.347e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-8-gfd2dfa282a30) finalized