MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-10-gd39abbc396d0) initialized Starting run at 05:31:19 UTC on 2023-10-09. Successfully read inputs file ... Castro git describe: 23.10-20-gb68e0ef43 AMReX git describe: 23.10-10-gd39abbc39 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014867511 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359711839 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335886985 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.371545081 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335692126 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352650758 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337981875 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309238696 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309277945 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309661484 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309149129 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0098196 seconds Ending run at 05:31:22 UTC on 2023-10-09. Run time = 3.552514625 Run time without initialization = 3.346395514 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.551 ... 3.552 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2519 2.3218 2.4016 67.60% Gravity::make_radial_gravity() 21 0.3309 0.3435 0.3595 10.12% check_for_negative_density() 10 0.008394 0.08928 0.161 4.53% Castro::initData() 1 0.04134 0.0895 0.1368 3.85% Castro::estTimeStep() 21 0.03835 0.07859 0.1214 3.42% FabArray::ParallelCopy_finish() 41 0.03633 0.05781 0.09448 2.66% amrex::Copy() 193 0.06544 0.07753 0.08607 2.42% FabArray::setVal() 143 0.0618 0.07 0.08364 2.35% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04928 0.05287 1.49% Castro::normalize_species() 62 0.0411 0.04217 0.04354 1.23% FabArray::ParallelCopy_nowait() 41 0.03463 0.04088 0.04322 1.22% StateData::FillBoundary(geom) 41 0.03423 0.0385 0.04285 1.21% FillPatchIterator::Initialize 41 0.02681 0.03258 0.03488 0.98% Gravity::interpolate_monopole_grav() 21 0.02785 0.02811 0.0289 0.81% Castro::construct_new_gravity_source() 10 0.02217 0.02461 0.02821 0.79% Castro::computeTemp() 63 0.01943 0.02007 0.02143 0.60% Castro::initialize_do_advance() 10 0.0114 0.0179 0.02112 0.59% VisMF::Write(FabArray) 2 0.01201 0.01291 0.01564 0.44% Castro::initialize_advance() 10 0.004154 0.01012 0.01382 0.39% FabArray::Saxpy() 20 0.01031 0.01255 0.01332 0.37% FabArray::setDomainBndry() 41 0.008451 0.0116 0.01278 0.36% MultiFab::contains_nan() 20 0.01074 0.01166 0.01264 0.36% Amr::writePlotFile() 2 0.00642 0.009246 0.01064 0.30% Castro::construct_old_gravity_source() 10 0.007032 0.009506 0.01029 0.29% Castro::initMFs() 1 0.006054 0.007944 0.009363 0.26% Castro::enforce_min_density() 62 0.007193 0.007469 0.007875 0.22% StateData::define() 4 0.005078 0.00656 0.007733 0.22% Castro::construct_new_source() 50 0.005562 0.006111 0.006386 0.18% Gravity::get_new_grav_vector() 11 0.003065 0.004074 0.005859 0.16% main() 1 0.003396 0.004383 0.00502 0.14% Castro::swap_state_time_levels() 10 0.003246 0.004215 0.004994 0.14% Amr::coarseTimeStep() 10 0.001195 0.002573 0.003722 0.10% Gravity::get_old_grav_vector() 10 0.001593 0.002056 0.00254 0.07% Castro::buildMetrics() 1 0.001437 0.001871 0.002214 0.06% Castro::finalize_do_advance() 10 0.0005124 0.001103 0.001336 0.04% AmrLevel::FillPatch() 41 0.0007834 0.00089 0.001058 0.03% Amr::InitAmr() 1 0.0002502 0.000389 0.0004747 0.01% Amr::timeStep() 10 0.000178 0.0002366 0.0004434 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0003079 0.0003629 0.01% DistributionMapping::LeastUsedCPUs() 1 7.609e-06 0.0001032 0.0002733 0.01% Castro::clean_state() 62 0.0001545 0.0002072 0.0002616 0.01% Castro::do_advance_ctu() 10 0.0001565 0.0001873 0.0002265 0.01% FillPatchIterator::FillFromLevel0() 41 9.838e-05 0.0001253 0.0001657 0.00% StateDataPhysBCFunct::() 41 0.0001041 0.0001181 0.0001364 0.00% Castro::finalize_advance() 10 9.487e-05 0.000111 0.0001233 0.00% Castro::do_old_sources() 10 8.726e-05 9.889e-05 0.0001123 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.704e-05 0.0001015 0.00% FabArray::ParallelCopy() 41 7.071e-05 8.426e-05 9.997e-05 0.00% Castro::construct_old_source() 50 7.181e-05 7.847e-05 9.384e-05 0.00% FillPatchSingleLevel 41 6.676e-05 7.502e-05 9.055e-05 0.00% Castro::Castro() 1 5.49e-05 7.025e-05 8.709e-05 0.00% FabArrayBase::getCPC() 41 4.123e-05 5.455e-05 7.659e-05 0.00% Castro::subcycle_advance_ctu() 10 4.657e-05 5.603e-05 7.347e-05 0.00% Castro::advance() 10 4.086e-05 5.242e-05 7.256e-05 0.00% Castro::do_new_sources() 10 6.104e-05 6.593e-05 7.167e-05 0.00% Amr::FinalizeInit() 1 3.71e-06 1.367e-05 6.7e-05 0.00% Amr::writeSmallPlotFile() 1 3.135e-05 5.131e-05 6.572e-05 0.00% Castro::construct_old_gravity() 10 4.521e-05 5.227e-05 6.503e-05 0.00% Castro::apply_source_to_state() 20 4.138e-05 4.961e-05 5.761e-05 0.00% Castro::construct_new_gravity() 10 3.701e-05 4.74e-05 5.732e-05 0.00% Castro::enforce_speed_limit() 62 2.554e-05 2.984e-05 3.962e-05 0.00% FabArrayBase::CPC::define() 2 2.41e-05 2.788e-05 3.84e-05 0.00% Amr::defBaseLevel() 1 2.357e-05 2.97e-05 3.529e-05 0.00% Castro::expand_state() 10 2.146e-05 2.51e-05 2.859e-05 0.00% Castro::check_for_nan() 20 2.196e-05 2.499e-05 2.757e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.544e-05 2.259e-05 2.689e-05 0.00% Castro::post_timestep() 10 1.551e-05 1.66e-05 1.789e-05 0.00% Amr::initSubcycle() 1 8.726e-06 1.256e-05 1.637e-05 0.00% Gravity::swapTimeLevels() 10 1.17e-05 1.403e-05 1.581e-05 0.00% Castro::computeNewDt() 9 9.932e-06 1.131e-05 1.274e-05 0.00% Gravity::set_mass_offset() 10 1.008e-05 1.15e-05 1.266e-05 0.00% Castro::create_source_corrector() 10 6.367e-06 8.539e-06 1.044e-05 0.00% Castro::FluxRegCrseInit 10 7.11e-06 7.697e-06 8.324e-06 0.00% Castro::retry_advance_ctu() 10 6.5e-06 7.395e-06 8.057e-06 0.00% Amr::initialInit() 1 1.288e-06 3.167e-06 7.885e-06 0.00% Castro::post_regrid() 1 2.091e-06 3.415e-06 7.687e-06 0.00% Amr::init() 1 2.081e-06 3.002e-06 7.219e-06 0.00% Castro::computeInitialDt() 2 3.349e-06 4.454e-06 7.158e-06 0.00% Castro::post_init() 1 2.932e-06 3.899e-06 6.908e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.168e-06 4.539e-06 5.338e-06 0.00% Amr::InitializeInit() 1 1.779e-06 2.503e-06 5.071e-06 0.00% Castro::FluxRegFineAdd() 10 2.073e-06 2.297e-06 2.89e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.229e-06 1.382e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.551 3.552 3.553 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 93.78% Amr::timeStep() 10 3.317 3.318 3.32 93.45% Castro::advance() 10 3.301 3.302 3.303 92.98% Castro::subcycle_advance_ctu() 10 3.215 3.226 3.235 91.05% Castro::do_advance_ctu() 10 3.215 3.226 3.235 91.05% Castro::construct_ctu_hydro_source() 10 2.43 2.434 2.437 68.61% Gravity::make_radial_gravity() 21 0.3463 0.3595 0.3731 10.50% Gravity::get_new_grav_vector() 11 0.2329 0.236 0.2385 6.71% AmrLevel::FillPatch() 41 0.1923 0.2126 0.2264 6.37% Castro::construct_old_gravity() 10 0.2003 0.2079 0.219 6.16% Gravity::get_old_grav_vector() 10 0.1996 0.2073 0.2184 6.15% Castro::construct_new_gravity() 10 0.2043 0.207 0.2089 5.88% Amr::init() 1 0.2055 0.2056 0.2057 5.79% FillPatchIterator::Initialize 41 0.1617 0.1818 0.2011 5.66% Amr::initialInit() 1 0.1902 0.1906 0.1911 5.38% Castro::initialize_do_advance() 10 0.1664 0.1784 0.1893 5.33% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1377 0.1658 4.67% FillPatchSingleLevel 41 0.1151 0.1375 0.1656 4.66% check_for_negative_density() 10 0.008394 0.08928 0.161 4.53% Amr::InitializeInit() 1 0.06084 0.1118 0.1576 4.44% Amr::defBaseLevel() 1 0.06084 0.1118 0.1576 4.44% Castro::initData() 1 0.04487 0.09337 0.141 3.97% Castro::expand_state() 10 0.1091 0.1228 0.133 3.74% Amr::FinalizeInit() 1 0.03277 0.07877 0.1297 3.65% FabArray::ParallelCopy() 41 0.07697 0.09886 0.1293 3.64% Castro::clean_state() 62 0.1141 0.1185 0.1247 3.51% Castro::estTimeStep() 21 0.03835 0.07859 0.1214 3.42% Castro::do_old_sources() 10 0.09131 0.0954 0.09952 2.80% Castro::computeInitialDt() 2 0.002331 0.04819 0.09909 2.79% FabArray::ParallelCopy_finish() 41 0.03633 0.05781 0.09448 2.66% amrex::Copy() 193 0.06544 0.07753 0.08607 2.42% Castro::initialize_advance() 10 0.06309 0.0726 0.08393 2.36% FabArray::setVal() 143 0.0618 0.07 0.08364 2.35% Castro::do_new_sources() 10 0.05894 0.06517 0.07484 2.11% Castro::computeTemp() 63 0.06667 0.06966 0.07461 2.10% Castro::reset_internal_energy(MultiFab) 63 0.04724 0.04959 0.05319 1.50% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04928 0.05287 1.49% Castro::normalize_species() 62 0.0411 0.04217 0.04354 1.23% FabArray::ParallelCopy_nowait() 41 0.03475 0.04096 0.04329 1.22% StateDataPhysBCFunct::() 41 0.03435 0.03862 0.04296 1.21% StateData::FillBoundary(geom) 41 0.03423 0.0385 0.04285 1.21% Castro::construct_new_source() 50 0.02822 0.03073 0.03432 0.97% Castro::post_init() 1 0.02948 0.03011 0.03044 0.86% Castro::finalize_do_advance() 10 0.01224 0.02225 0.02894 0.81% Gravity::interpolate_monopole_grav() 21 0.02785 0.02811 0.0289 0.81% Castro::construct_new_gravity_source() 10 0.02217 0.02461 0.02821 0.79% Amr::writePlotFile() 2 0.02441 0.0249 0.02527 0.71% Castro::post_timestep() 10 0.01558 0.01603 0.01659 0.47% VisMF::Write(FabArray) 2 0.01201 0.01291 0.01564 0.44% Castro::Castro() 1 0.008986 0.0117 0.01388 0.39% Castro::apply_source_to_state() 20 0.01036 0.0126 0.01337 0.38% FabArray::Saxpy() 20 0.01031 0.01255 0.01332 0.37% FabArray::setDomainBndry() 41 0.008451 0.0116 0.01278 0.36% Castro::check_for_nan() 20 0.01077 0.01168 0.01267 0.36% MultiFab::contains_nan() 20 0.01074 0.01166 0.01264 0.36% Castro::construct_old_source() 50 0.007106 0.009584 0.01038 0.29% Castro::construct_old_gravity_source() 10 0.007032 0.009506 0.01029 0.29% Castro::initMFs() 1 0.006054 0.007944 0.009363 0.26% Castro::computeNewDt() 9 0.009254 0.00927 0.009279 0.26% Castro::enforce_min_density() 62 0.007193 0.007469 0.007875 0.22% AmrLevel::AmrLevel(dm) 1 0.005094 0.006583 0.007759 0.22% StateData::define() 4 0.005078 0.00656 0.007733 0.22% Castro::swap_state_time_levels() 10 0.003246 0.004215 0.004994 0.14% Castro::finalize_advance() 10 0.002918 0.003731 0.004542 0.13% Castro::buildMetrics() 1 0.001546 0.002041 0.002418 0.07% Castro::post_regrid() 1 0.001557 0.001775 0.002318 0.07% Amr::InitAmr() 1 0.0002591 0.0004015 0.0004911 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.333e-05 0.000109 0.00028 0.01% DistributionMapping::LeastUsedCPUs() 1 7.609e-06 0.0001032 0.0002733 0.01% FabArrayBase::getCPC() 41 6.547e-05 8.243e-05 0.000115 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.704e-05 0.0001015 0.00% Amr::writeSmallPlotFile() 1 3.135e-05 5.131e-05 6.572e-05 0.00% Castro::enforce_speed_limit() 62 2.554e-05 2.984e-05 3.962e-05 0.00% FabArrayBase::CPC::define() 2 2.41e-05 2.788e-05 3.84e-05 0.00% Amr::initSubcycle() 1 8.726e-06 1.256e-05 1.637e-05 0.00% Gravity::swapTimeLevels() 10 1.17e-05 1.403e-05 1.581e-05 0.00% Gravity::set_mass_offset() 10 1.008e-05 1.15e-05 1.266e-05 0.00% Castro::create_source_corrector() 10 6.367e-06 8.539e-06 1.044e-05 0.00% Castro::FluxRegCrseInit 10 7.11e-06 7.697e-06 8.324e-06 0.00% Castro::retry_advance_ctu() 10 6.5e-06 7.395e-06 8.057e-06 0.00% Castro::FluxRegFineAdd() 10 2.073e-06 2.297e-06 2.89e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.229e-06 1.382e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-10-gd39abbc396d0) finalized