MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-12-g77d4d1fe5ce6) initialized Starting run at 05:24:58 UTC on 2023-10-10. Successfully read inputs file ... Castro git describe: 23.10-31-g19e680503 AMReX git describe: 23.10-12-g77d4d1fe5 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014469886 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373868974 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.415933126 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.423400271 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.391942282 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.417447582 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.395824348 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.393163701 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.395138638 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.399719956 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.419912561 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.08394036 seconds Ending run at 05:25:02 UTC on 2023-10-10. Run time = 4.299280369 Run time without initialization = 4.117385989 Average number of zones advanced per microsecond: 0.637 Average number of zones advanced per microsecond per rank: 0.080 TinyProfiler total time across processes [min...avg...max]: 4.298 ... 4.299 ... 4.299 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5194 2.7154 2.9284 68.11% check_for_negative_density() 10 0.02249 0.2399 0.4414 10.27% Gravity::make_radial_gravity() 21 0.3302 0.3455 0.3647 8.48% amrex::Copy() 193 0.09678 0.1118 0.1246 2.90% Castro::initData() 1 0.04037 0.07816 0.1158 2.69% Castro::estTimeStep() 21 0.02414 0.06759 0.0986 2.29% FabArray::setVal() 143 0.08955 0.09398 0.09829 2.29% Amr::writePlotFile() 2 0.0785 0.082 0.08376 1.95% FabArray::ParallelCopy_finish() 41 0.05069 0.05753 0.06313 1.47% FabArray::ParallelCopy_nowait() 41 0.05731 0.05963 0.0617 1.44% FillPatchIterator::Initialize 41 0.04549 0.05072 0.05633 1.31% Castro::reset_internal_energy(Fab) 1008 0.04971 0.05196 0.05371 1.25% StateData::FillBoundary(geom) 41 0.0386 0.04463 0.05002 1.16% Castro::normalize_species() 62 0.04123 0.04262 0.04561 1.06% Castro::construct_new_gravity_source() 10 0.02655 0.02938 0.03276 0.76% Gravity::interpolate_monopole_grav() 21 0.02772 0.02827 0.02919 0.68% Castro::initialize_do_advance() 10 0.02237 0.02569 0.0284 0.66% Castro::computeTemp() 63 0.02023 0.02124 0.02205 0.51% FabArray::setDomainBndry() 41 0.01707 0.01867 0.02027 0.47% FabArray::Saxpy() 20 0.01819 0.01866 0.0197 0.46% Castro::initialize_advance() 10 0.01488 0.01568 0.01673 0.39% MultiFab::contains_nan() 20 0.01306 0.01517 0.01659 0.39% VisMF::Write(FabArray) 2 0.01202 0.01293 0.01604 0.37% Castro::construct_old_gravity_source() 10 0.01397 0.01483 0.01576 0.37% Castro::construct_new_source() 50 0.007499 0.008088 0.008631 0.20% Castro::enforce_min_density() 62 0.00799 0.00826 0.008485 0.20% Castro::initMFs() 1 0.006314 0.006759 0.007819 0.18% main() 1 0.005197 0.005876 0.00622 0.14% Gravity::get_new_grav_vector() 11 0.004297 0.005101 0.005813 0.14% StateData::define() 4 0.005143 0.005343 0.005808 0.14% Castro::swap_state_time_levels() 10 0.003423 0.004481 0.005013 0.12% Amr::coarseTimeStep() 10 0.00172 0.002881 0.004003 0.09% Gravity::get_old_grav_vector() 10 0.002853 0.003016 0.003258 0.08% Castro::buildMetrics() 1 0.001473 0.001562 0.001749 0.04% Castro::finalize_do_advance() 10 0.001065 0.001282 0.00143 0.03% AmrLevel::FillPatch() 41 0.0008967 0.001001 0.001111 0.03% Amr::timeStep() 10 0.0001924 0.0002651 0.0004456 0.01% Amr::InitAmr() 1 0.0002458 0.0002866 0.0004021 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003062 0.0003399 0.0003972 0.01% Castro::do_advance_ctu() 10 0.0001859 0.0002282 0.0002617 0.01% Castro::clean_state() 62 0.0001924 0.0002159 0.0002394 0.01% Castro::finalize_advance() 10 0.0001115 0.0001452 0.0002022 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001349 0.0001537 0.0001657 0.00% Castro::do_old_sources() 10 0.0001372 0.0001459 0.00016 0.00% StateDataPhysBCFunct::() 41 0.0001234 0.0001352 0.0001503 0.00% DistributionMapping::LeastUsedCPUs() 1 7.472e-06 8.954e-05 0.0001292 0.00% Castro::construct_old_source() 50 9.96e-05 0.0001078 0.0001258 0.00% FillPatchSingleLevel 41 9.013e-05 9.823e-05 0.0001106 0.00% FabArray::ParallelCopy() 41 9.593e-05 0.0001032 0.0001087 0.00% Castro::Castro() 1 5.546e-05 8.79e-05 0.0001078 0.00% Castro::do_new_sources() 10 7.509e-05 8.642e-05 9.378e-05 0.00% Castro::enforce_consistent_e() 1 7.893e-05 8.565e-05 9.232e-05 0.00% FabArrayBase::getCPC() 41 6.47e-05 7.003e-05 7.788e-05 0.00% Castro::apply_source_to_state() 20 5.789e-05 6.806e-05 7.693e-05 0.00% Castro::subcycle_advance_ctu() 10 5.687e-05 6.899e-05 7.685e-05 0.00% Amr::FinalizeInit() 1 3.45e-06 1.266e-05 7.196e-05 0.00% Castro::construct_old_gravity() 10 5.588e-05 6.094e-05 7.007e-05 0.00% Amr::defBaseLevel() 1 3.558e-05 4.843e-05 6.607e-05 0.00% Castro::advance() 10 4.544e-05 5.572e-05 6.179e-05 0.00% Castro::construct_new_gravity() 10 3.407e-05 4.809e-05 6.072e-05 0.00% Castro::expand_state() 10 3.124e-05 4.081e-05 5.394e-05 0.00% Amr::writeSmallPlotFile() 1 3.331e-05 4.076e-05 5.239e-05 0.00% Castro::enforce_speed_limit() 62 3.197e-05 3.691e-05 4.079e-05 0.00% FabArrayBase::CPC::define() 2 2.284e-05 2.781e-05 3.926e-05 0.00% Castro::check_for_nan() 20 2.585e-05 2.951e-05 3.491e-05 0.00% Gravity::swapTimeLevels() 10 1.336e-05 1.983e-05 2.746e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.454e-05 1.987e-05 2.716e-05 0.00% Castro::post_timestep() 10 1.628e-05 1.851e-05 2.303e-05 0.00% Gravity::set_mass_offset() 10 8.364e-06 1.271e-05 1.906e-05 0.00% Castro::create_source_corrector() 10 8.412e-06 1.114e-05 1.434e-05 0.00% Castro::computeNewDt() 9 9.344e-06 1.073e-05 1.219e-05 0.00% Castro::FluxRegCrseInit 10 5.938e-06 8.825e-06 1.147e-05 0.00% Amr::initSubcycle() 1 8.541e-06 9.402e-06 1.027e-05 0.00% Castro::retry_advance_ctu() 10 7.374e-06 8.253e-06 1.016e-05 0.00% Amr::initialInit() 1 1.255e-06 3.07e-06 8.45e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.681e-06 5.913e-06 7.772e-06 0.00% Castro::post_init() 1 2.638e-06 3.394e-06 4.871e-06 0.00% Amr::InitializeInit() 1 1.661e-06 2.406e-06 4.654e-06 0.00% Castro::computeInitialDt() 2 3.691e-06 3.933e-06 4.59e-06 0.00% Castro::post_regrid() 1 1.897e-06 2.551e-06 3.862e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.509e-06 3.331e-06 0.00% Amr::init() 1 1.773e-06 2.333e-06 3.149e-06 0.00% DistributionMapping::Distribute() 1 9.52e-07 1.303e-06 2.156e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.298 4.299 4.299 100.00% Amr::coarseTimeStep() 10 4.027 4.027 4.027 93.67% Amr::timeStep() 10 4.012 4.014 4.015 93.38% Castro::advance() 10 3.997 3.997 3.998 92.98% Castro::subcycle_advance_ctu() 10 3.897 3.898 3.901 90.74% Castro::do_advance_ctu() 10 3.896 3.898 3.901 90.74% Castro::construct_ctu_hydro_source() 10 2.972 2.978 2.983 69.38% check_for_negative_density() 10 0.02249 0.2399 0.4414 10.27% Gravity::make_radial_gravity() 21 0.3543 0.371 0.391 9.09% AmrLevel::FillPatch() 41 0.257 0.2772 0.2898 6.74% Castro::construct_old_gravity() 10 0.2172 0.2298 0.2453 5.71% Gravity::get_new_grav_vector() 11 0.2427 0.244 0.2451 5.70% Gravity::get_old_grav_vector() 10 0.2163 0.229 0.2446 5.69% FillPatchIterator::Initialize 41 0.2221 0.2318 0.2398 5.58% Castro::initialize_do_advance() 10 0.2058 0.2228 0.2365 5.50% Castro::construct_new_gravity() 10 0.2165 0.2172 0.2188 5.09% Amr::init() 1 0.1814 0.1815 0.1815 4.22% FillPatchIterator::FillFromLevel0() 41 0.1576 0.1624 0.1674 3.89% FillPatchSingleLevel 41 0.1574 0.1622 0.1673 3.89% Amr::initialInit() 1 0.1666 0.1669 0.1671 3.89% Castro::expand_state() 10 0.1343 0.1526 0.1667 3.88% Castro::do_old_sources() 10 0.1317 0.1342 0.1365 3.17% Amr::InitializeInit() 1 0.0606 0.09863 0.1363 3.17% Amr::defBaseLevel() 1 0.06059 0.09863 0.1363 3.17% Castro::clean_state() 62 0.1202 0.1237 0.1284 2.99% amrex::Copy() 193 0.09678 0.1118 0.1246 2.90% FabArray::ParallelCopy() 41 0.1117 0.1174 0.1219 2.83% Castro::initData() 1 0.04466 0.08224 0.1198 2.79% Amr::FinalizeInit() 1 0.03037 0.06826 0.1062 2.47% Amr::writePlotFile() 2 0.09842 0.09865 0.09898 2.30% Castro::estTimeStep() 21 0.02414 0.06759 0.0986 2.29% FabArray::setVal() 143 0.08955 0.09398 0.09829 2.29% Castro::initialize_advance() 10 0.09148 0.09439 0.09618 2.24% Castro::do_new_sources() 10 0.0709 0.07638 0.08246 1.92% Castro::computeInitialDt() 2 0.002278 0.03991 0.07786 1.81% Castro::computeTemp() 63 0.07091 0.07354 0.07507 1.75% FabArray::ParallelCopy_finish() 41 0.05069 0.05753 0.06313 1.47% FabArray::ParallelCopy_nowait() 41 0.05741 0.05973 0.06179 1.44% Castro::reset_internal_energy(MultiFab) 63 0.05001 0.0523 0.05404 1.26% Castro::reset_internal_energy(Fab) 1008 0.04971 0.05196 0.05371 1.25% StateDataPhysBCFunct::() 41 0.03873 0.04476 0.05016 1.17% StateData::FillBoundary(geom) 41 0.0386 0.04463 0.05002 1.16% Castro::normalize_species() 62 0.04123 0.04262 0.04561 1.06% Castro::construct_new_source() 50 0.03405 0.03746 0.04125 0.96% Castro::construct_new_gravity_source() 10 0.02655 0.02938 0.03276 0.76% Gravity::interpolate_monopole_grav() 21 0.02772 0.02827 0.02919 0.68% Castro::post_init() 1 0.02772 0.02792 0.02819 0.66% Castro::finalize_do_advance() 10 0.01261 0.01945 0.02633 0.61% FabArray::setDomainBndry() 41 0.01707 0.01867 0.02027 0.47% Castro::apply_source_to_state() 20 0.01826 0.01873 0.01978 0.46% FabArray::Saxpy() 20 0.01819 0.01866 0.0197 0.46% Castro::post_timestep() 10 0.01558 0.01616 0.01682 0.39% Castro::check_for_nan() 20 0.01309 0.0152 0.01662 0.39% MultiFab::contains_nan() 20 0.01306 0.01517 0.01659 0.39% VisMF::Write(FabArray) 2 0.01202 0.01293 0.01604 0.37% Castro::construct_old_source() 50 0.01407 0.01494 0.01589 0.37% Castro::construct_old_gravity_source() 10 0.01397 0.01483 0.01576 0.37% Castro::Castro() 1 0.01038 0.01088 0.0117 0.27% Castro::computeNewDt() 9 0.009517 0.009529 0.009542 0.22% Castro::enforce_min_density() 62 0.00799 0.00826 0.008485 0.20% Castro::initMFs() 1 0.006314 0.006759 0.007819 0.18% AmrLevel::AmrLevel(dm) 1 0.005162 0.005363 0.00583 0.14% StateData::define() 4 0.005143 0.005343 0.005808 0.14% Castro::swap_state_time_levels() 10 0.003423 0.004481 0.005013 0.12% Castro::finalize_advance() 10 0.003962 0.004501 0.004917 0.11% Castro::post_regrid() 1 0.001556 0.001666 0.001893 0.04% Castro::buildMetrics() 1 0.001589 0.001683 0.00188 0.04% Amr::InitAmr() 1 0.0002544 0.000296 0.0004112 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.219e-05 9.675e-05 0.000138 0.00% DistributionMapping::LeastUsedCPUs() 1 7.472e-06 8.954e-05 0.0001292 0.00% FabArrayBase::getCPC() 41 8.934e-05 9.783e-05 0.0001106 0.00% Castro::enforce_consistent_e() 1 7.893e-05 8.565e-05 9.232e-05 0.00% Amr::writeSmallPlotFile() 1 3.331e-05 4.076e-05 5.239e-05 0.00% Castro::enforce_speed_limit() 62 3.197e-05 3.691e-05 4.079e-05 0.00% FabArrayBase::CPC::define() 2 2.284e-05 2.781e-05 3.926e-05 0.00% Gravity::swapTimeLevels() 10 1.336e-05 1.983e-05 2.746e-05 0.00% Gravity::set_mass_offset() 10 8.364e-06 1.271e-05 1.906e-05 0.00% Castro::create_source_corrector() 10 8.412e-06 1.114e-05 1.434e-05 0.00% Castro::FluxRegCrseInit 10 5.938e-06 8.825e-06 1.147e-05 0.00% Amr::initSubcycle() 1 8.541e-06 9.402e-06 1.027e-05 0.00% Castro::retry_advance_ctu() 10 7.374e-06 8.253e-06 1.016e-05 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.509e-06 3.331e-06 0.00% DistributionMapping::Distribute() 1 9.52e-07 1.303e-06 2.156e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 27 B 30 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-12-g77d4d1fe5ce6) finalized