MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-12-g77d4d1fe5ce6) initialized Starting run at 05:20:36 UTC on 2023-10-11. Successfully read inputs file ... Castro git describe: 23.10-34-gd2ace11ff AMReX git describe: 23.10-12-g77d4d1fe5 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014130685 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365130376 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35319178 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347449682 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33837648 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35479245 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.370585387 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.321258679 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314173018 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314327672 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314795261 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009777988 seconds Ending run at 05:20:40 UTC on 2023-10-11. Run time = 3.585671107 Run time without initialization = 3.408959044 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.585 ... 3.585 ... 3.586 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2739 2.3573 2.4121 67.27% Gravity::make_radial_gravity() 21 0.3162 0.3248 0.3376 9.42% check_for_negative_density() 10 0.04473 0.1031 0.1883 5.25% Castro::estTimeStep() 21 0.02584 0.07346 0.1192 3.32% Castro::initData() 1 0.04028 0.0775 0.1139 3.18% amrex::Copy() 193 0.07842 0.08379 0.09206 2.57% FabArray::setVal() 143 0.0667 0.07618 0.08861 2.47% FabArray::ParallelCopy_finish() 41 0.03494 0.05541 0.06602 1.84% Castro::reset_internal_energy(Fab) 1008 0.04695 0.04855 0.05063 1.41% FabArray::ParallelCopy_nowait() 41 0.03889 0.04237 0.04432 1.24% Castro::normalize_species() 62 0.0412 0.0425 0.04387 1.22% StateData::FillBoundary(geom) 41 0.03506 0.03877 0.04242 1.18% FillPatchIterator::Initialize 41 0.028 0.03463 0.04037 1.13% Castro::construct_new_gravity_source() 10 0.02319 0.02781 0.03554 0.99% Gravity::interpolate_monopole_grav() 21 0.02803 0.02827 0.02873 0.80% Castro::initialize_do_advance() 10 0.01762 0.01966 0.02354 0.66% Castro::computeTemp() 63 0.01866 0.01948 0.02036 0.57% Castro::initialize_advance() 10 0.009672 0.01222 0.01499 0.42% VisMF::Write(FabArray) 2 0.01147 0.01234 0.01468 0.41% FabArray::Saxpy() 20 0.01348 0.0142 0.01467 0.41% FabArray::setDomainBndry() 41 0.009089 0.01214 0.01332 0.37% MultiFab::contains_nan() 20 0.01131 0.01202 0.01289 0.36% Castro::construct_old_gravity_source() 10 0.009859 0.01058 0.01138 0.32% Castro::construct_new_source() 50 0.006262 0.007064 0.009932 0.28% Amr::writePlotFile() 2 0.006462 0.008573 0.009309 0.26% Castro::enforce_min_density() 62 0.007199 0.007546 0.008223 0.23% Castro::initMFs() 1 0.006112 0.006489 0.007986 0.22% StateData::define() 4 0.00518 0.005315 0.005815 0.16% Castro::swap_state_time_levels() 10 0.003279 0.004294 0.004487 0.13% main() 1 0.003968 0.004139 0.004421 0.12% Gravity::get_new_grav_vector() 11 0.002915 0.003621 0.004126 0.12% Amr::coarseTimeStep() 10 0.001425 0.002703 0.003727 0.10% Gravity::get_old_grav_vector() 10 0.001567 0.002065 0.002348 0.07% Castro::buildMetrics() 1 0.001423 0.001482 0.001656 0.05% Castro::finalize_do_advance() 10 0.00104 0.00134 0.001613 0.04% AmrLevel::FillPatch() 41 0.0008215 0.0009809 0.001116 0.03% Amr::timeStep() 10 0.000165 0.0002294 0.0004038 0.01% Amr::InitAmr() 1 0.0002524 0.000282 0.0004007 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00028 0.000308 0.0003729 0.01% Castro::do_advance_ctu() 10 0.000147 0.0001772 0.0002039 0.01% Castro::clean_state() 62 0.0001437 0.0001622 0.0001833 0.01% DistributionMapping::LeastUsedCPUs() 1 7.585e-06 0.0001262 0.0001487 0.00% Castro::finalize_advance() 10 8.691e-05 0.000108 0.0001302 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.000114 0.000123 0.00% StateDataPhysBCFunct::() 41 9.102e-05 0.0001065 0.0001153 0.00% Castro::do_old_sources() 10 7.034e-05 9.398e-05 0.000103 0.00% Castro::Castro() 1 5.893e-05 7.778e-05 0.0001022 0.00% Castro::enforce_consistent_e() 1 7.597e-05 8.571e-05 9.81e-05 0.00% Amr::FinalizeInit() 1 4.948e-06 1.687e-05 9.527e-05 0.00% Castro::construct_old_source() 50 7.103e-05 7.86e-05 9.328e-05 0.00% FabArray::ParallelCopy() 41 7.029e-05 7.576e-05 8.18e-05 0.00% Castro::do_new_sources() 10 5.033e-05 6.642e-05 8.133e-05 0.00% FillPatchSingleLevel 41 6.292e-05 7.017e-05 7.878e-05 0.00% Castro::enforce_speed_limit() 62 2.42e-05 3.323e-05 7.583e-05 0.00% Amr::writeSmallPlotFile() 1 2.769e-05 5.392e-05 6.701e-05 0.00% Castro::subcycle_advance_ctu() 10 4.089e-05 4.888e-05 6.661e-05 0.00% Castro::apply_source_to_state() 20 3.261e-05 4.689e-05 5.884e-05 0.00% Castro::construct_old_gravity() 10 4.185e-05 4.88e-05 5.828e-05 0.00% Castro::advance() 10 3.803e-05 4.683e-05 5.827e-05 0.00% FabArrayBase::getCPC() 41 3.953e-05 4.808e-05 5.807e-05 0.00% Castro::construct_new_gravity() 10 3.632e-05 4.161e-05 5.115e-05 0.00% Amr::defBaseLevel() 1 2.292e-05 3.347e-05 4.175e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.677e-05 3.578e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.833e-05 2.277e-05 3.344e-05 0.00% Castro::expand_state() 10 1.966e-05 2.335e-05 2.597e-05 0.00% Castro::check_for_nan() 20 2.203e-05 2.372e-05 2.543e-05 0.00% Castro::post_timestep() 10 1.321e-05 1.625e-05 1.835e-05 0.00% Gravity::set_mass_offset() 10 8.765e-06 1.187e-05 1.804e-05 0.00% Gravity::swapTimeLevels() 10 1.088e-05 1.382e-05 1.57e-05 0.00% Castro::create_source_corrector() 10 7.329e-06 9.436e-06 1.433e-05 0.00% Castro::computeNewDt() 9 8.327e-06 1.054e-05 1.226e-05 0.00% Amr::initSubcycle() 1 8.757e-06 9.346e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.167e-06 7.461e-06 9.21e-06 0.00% Castro::FluxRegCrseInit 10 6.844e-06 7.874e-06 8.649e-06 0.00% Amr::initialInit() 1 1.646e-06 2.57e-06 7.298e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.618e-06 4.62e-06 6.66e-06 0.00% Castro::computeInitialDt() 2 3.751e-06 4.909e-06 5.761e-06 0.00% Castro::post_init() 1 3.297e-06 4.023e-06 5.691e-06 0.00% Amr::InitializeInit() 1 1.931e-06 2.598e-06 5.311e-06 0.00% Castro::post_regrid() 1 1.779e-06 3.168e-06 4.158e-06 0.00% Castro::FluxRegFineAdd() 10 2.366e-06 2.505e-06 2.873e-06 0.00% Amr::init() 1 2.078e-06 2.387e-06 2.699e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.063e-06 1.22e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.585 3.585 3.586 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 94.68% Amr::timeStep() 10 3.381 3.382 3.383 94.35% Castro::advance() 10 3.365 3.366 3.367 93.90% Castro::subcycle_advance_ctu() 10 3.274 3.284 3.292 91.81% Castro::do_advance_ctu() 10 3.274 3.283 3.292 91.80% Castro::construct_ctu_hydro_source() 10 2.478 2.482 2.485 69.31% Gravity::make_radial_gravity() 21 0.3332 0.3423 0.3538 9.87% AmrLevel::FillPatch() 41 0.1988 0.2175 0.234 6.53% Gravity::get_new_grav_vector() 11 0.2213 0.2232 0.2265 6.32% Castro::construct_old_gravity() 10 0.1997 0.206 0.2165 6.04% Gravity::get_old_grav_vector() 10 0.1986 0.2052 0.2154 6.01% Castro::construct_new_gravity() 10 0.1968 0.1985 0.2026 5.65% FillPatchIterator::Initialize 41 0.168 0.1838 0.1995 5.56% Castro::initialize_do_advance() 10 0.1693 0.1832 0.1934 5.39% check_for_negative_density() 10 0.04473 0.1031 0.1883 5.25% Amr::init() 1 0.1762 0.1763 0.1763 4.92% Amr::initialInit() 1 0.1619 0.1622 0.1625 4.53% FillPatchIterator::FillFromLevel0() 41 0.1181 0.137 0.1507 4.20% FillPatchSingleLevel 41 0.118 0.1369 0.1506 4.20% Castro::expand_state() 10 0.1095 0.1254 0.1383 3.86% Amr::InitializeInit() 1 0.05986 0.09761 0.134 3.74% Amr::defBaseLevel() 1 0.05986 0.09761 0.134 3.74% Castro::clean_state() 62 0.1147 0.1177 0.1214 3.38% Castro::estTimeStep() 21 0.02584 0.07346 0.1192 3.32% Castro::initData() 1 0.04396 0.08147 0.1181 3.29% FabArray::ParallelCopy() 41 0.07715 0.09793 0.1101 3.07% Amr::FinalizeInit() 1 0.02825 0.06459 0.102 2.84% Castro::do_old_sources() 10 0.09535 0.09874 0.1019 2.84% amrex::Copy() 193 0.07842 0.08379 0.09206 2.57% FabArray::setVal() 143 0.0667 0.07618 0.08861 2.47% Castro::initialize_advance() 10 0.07019 0.07831 0.08796 2.45% Castro::do_new_sources() 10 0.06266 0.07128 0.0801 2.23% Castro::computeInitialDt() 2 0.002157 0.03851 0.07614 2.12% Castro::computeTemp() 63 0.06639 0.06834 0.07131 1.99% FabArray::ParallelCopy_finish() 41 0.03494 0.05541 0.06602 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04724 0.04886 0.05095 1.42% Castro::reset_internal_energy(Fab) 1008 0.04695 0.04855 0.05063 1.41% FabArray::ParallelCopy_nowait() 41 0.03897 0.04244 0.04439 1.24% Castro::normalize_species() 62 0.0412 0.0425 0.04387 1.22% Castro::construct_new_source() 50 0.02953 0.03487 0.04381 1.22% StateDataPhysBCFunct::() 41 0.03515 0.03888 0.04253 1.19% StateData::FillBoundary(geom) 41 0.03506 0.03877 0.04242 1.18% Castro::finalize_do_advance() 10 0.01351 0.02711 0.03793 1.06% Castro::construct_new_gravity_source() 10 0.02319 0.02781 0.03554 0.99% Gravity::interpolate_monopole_grav() 21 0.02803 0.02827 0.02873 0.80% Castro::post_init() 1 0.02531 0.02559 0.02577 0.72% Amr::writePlotFile() 2 0.02367 0.02392 0.02415 0.67% Castro::post_timestep() 10 0.01553 0.01584 0.01641 0.46% Castro::apply_source_to_state() 20 0.01352 0.01425 0.01472 0.41% VisMF::Write(FabArray) 2 0.01147 0.01234 0.01468 0.41% FabArray::Saxpy() 20 0.01348 0.0142 0.01467 0.41% FabArray::setDomainBndry() 41 0.009089 0.01214 0.01332 0.37% Castro::check_for_nan() 20 0.01133 0.01204 0.01292 0.36% MultiFab::contains_nan() 20 0.01131 0.01202 0.01289 0.36% Castro::Castro() 1 0.01024 0.01064 0.01157 0.32% Castro::construct_old_source() 50 0.009935 0.01066 0.01146 0.32% Castro::construct_old_gravity_source() 10 0.009859 0.01058 0.01138 0.32% Castro::computeNewDt() 9 0.009194 0.009203 0.009215 0.26% Castro::enforce_min_density() 62 0.007199 0.007546 0.008223 0.23% Castro::initMFs() 1 0.006112 0.006489 0.007986 0.22% AmrLevel::AmrLevel(dm) 1 0.005203 0.005337 0.005834 0.16% StateData::define() 4 0.00518 0.005315 0.005815 0.16% Castro::finalize_advance() 10 0.00303 0.003821 0.004925 0.14% Castro::swap_state_time_levels() 10 0.003279 0.004294 0.004487 0.13% Castro::buildMetrics() 1 0.001545 0.001615 0.001816 0.05% Castro::post_regrid() 1 0.001554 0.001603 0.001687 0.05% Amr::InitAmr() 1 0.0002622 0.0002914 0.0004097 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.227e-05 0.0001319 0.0001565 0.00% DistributionMapping::LeastUsedCPUs() 1 7.585e-06 0.0001262 0.0001487 0.00% Castro::enforce_consistent_e() 1 7.597e-05 8.571e-05 9.81e-05 0.00% FabArrayBase::getCPC() 41 6.422e-05 7.485e-05 8.877e-05 0.00% Castro::enforce_speed_limit() 62 2.42e-05 3.323e-05 7.583e-05 0.00% Amr::writeSmallPlotFile() 1 2.769e-05 5.392e-05 6.701e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.677e-05 3.578e-05 0.00% Gravity::set_mass_offset() 10 8.765e-06 1.187e-05 1.804e-05 0.00% Gravity::swapTimeLevels() 10 1.088e-05 1.382e-05 1.57e-05 0.00% Castro::create_source_corrector() 10 7.329e-06 9.436e-06 1.433e-05 0.00% Amr::initSubcycle() 1 8.757e-06 9.346e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.167e-06 7.461e-06 9.21e-06 0.00% Castro::FluxRegCrseInit 10 6.844e-06 7.874e-06 8.649e-06 0.00% Castro::FluxRegFineAdd() 10 2.366e-06 2.505e-06 2.873e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.063e-06 1.22e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-12-g77d4d1fe5ce6) finalized