MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-13-gecaa14456e3f) initialized Starting run at 05:32:13 UTC on 2023-10-12. Successfully read inputs file ... Castro git describe: 23.10-34-gd2ace11ff AMReX git describe: 23.10-13-gecaa14456 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014925096 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357681481 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343142448 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358077694 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337133321 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352982698 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346482233 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31528226 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318778741 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309877535 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311745092 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010020439 seconds Ending run at 05:32:16 UTC on 2023-10-12. Run time = 3.569773083 Run time without initialization = 3.367088009 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.569 ... 3.57 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2718 2.3277 2.4088 67.48% Gravity::make_radial_gravity() 21 0.3317 0.3403 0.3477 9.74% check_for_negative_density() 10 0.01692 0.1033 0.161 4.51% Castro::initData() 1 0.04623 0.08339 0.135 3.78% Castro::estTimeStep() 21 0.02446 0.08813 0.1282 3.59% amrex::Copy() 193 0.06529 0.07446 0.08767 2.46% FabArray::setVal() 143 0.06222 0.07221 0.08579 2.40% FabArray::ParallelCopy_finish() 41 0.03566 0.06071 0.08462 2.37% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04865 0.05027 1.41% Castro::normalize_species() 62 0.04133 0.04274 0.04452 1.25% StateData::FillBoundary(geom) 41 0.03462 0.03844 0.04323 1.21% FabArray::ParallelCopy_nowait() 41 0.03463 0.03957 0.04184 1.17% FillPatchIterator::Initialize 41 0.02678 0.03135 0.03517 0.99% Gravity::interpolate_monopole_grav() 21 0.02779 0.02836 0.03073 0.86% Castro::construct_new_gravity_source() 10 0.0221 0.0251 0.02946 0.83% Castro::initialize_do_advance() 10 0.01122 0.01689 0.02081 0.58% Castro::computeTemp() 63 0.01889 0.01982 0.02063 0.58% VisMF::Write(FabArray) 2 0.01192 0.01303 0.01589 0.44% Castro::initialize_advance() 10 0.007886 0.01118 0.01452 0.41% FabArray::Saxpy() 20 0.01106 0.01281 0.0142 0.40% MultiFab::contains_nan() 20 0.01086 0.01162 0.01266 0.35% FabArray::setDomainBndry() 41 0.008926 0.01099 0.01237 0.35% Amr::writePlotFile() 2 0.00681 0.009794 0.01191 0.33% Castro::construct_old_gravity_source() 10 0.007513 0.009481 0.009981 0.28% Castro::enforce_min_density() 62 0.007123 0.0074 0.007835 0.22% StateData::define() 4 0.005135 0.005927 0.00764 0.21% Castro::initMFs() 1 0.006121 0.006819 0.007536 0.21% Castro::construct_new_source() 50 0.005671 0.006164 0.006402 0.18% main() 1 0.003511 0.00453 0.005152 0.14% Castro::swap_state_time_levels() 10 0.003075 0.003974 0.004272 0.12% Gravity::get_new_grav_vector() 11 0.002871 0.003493 0.003785 0.11% Amr::coarseTimeStep() 10 0.001318 0.002691 0.003699 0.10% Gravity::get_old_grav_vector() 10 0.0016 0.001844 0.002159 0.06% Castro::buildMetrics() 1 0.001435 0.001568 0.001669 0.05% Castro::finalize_do_advance() 10 0.0005038 0.001077 0.00141 0.04% AmrLevel::FillPatch() 41 0.000756 0.0008767 0.001115 0.03% Amr::InitAmr() 1 0.0002725 0.000356 0.0004819 0.01% Amr::timeStep() 10 0.0001611 0.0002333 0.0004481 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000287 0.0002966 0.0003133 0.01% DistributionMapping::LeastUsedCPUs() 1 6.996e-06 0.0001565 0.0002428 0.01% Castro::clean_state() 62 0.0001406 0.000159 0.0002274 0.01% Castro::do_advance_ctu() 10 0.0001305 0.0001633 0.0001892 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001001 0.0001115 0.0001257 0.00% StateDataPhysBCFunct::() 41 9.452e-05 0.0001075 0.000118 0.00% Castro::finalize_advance() 10 8.47e-05 9.911e-05 0.0001133 0.00% Castro::do_old_sources() 10 7.776e-05 9.061e-05 0.0001041 0.00% Castro::enforce_consistent_e() 1 7.895e-05 8.847e-05 9.551e-05 0.00% Castro::construct_old_source() 50 5.175e-05 6.805e-05 8.865e-05 0.00% Amr::FinalizeInit() 1 4.819e-06 1.558e-05 8.658e-05 0.00% Castro::Castro() 1 5.879e-05 7.055e-05 8.394e-05 0.00% FabArray::ParallelCopy() 41 6.508e-05 7.627e-05 8.362e-05 0.00% FillPatchSingleLevel 41 5.958e-05 6.793e-05 7.349e-05 0.00% Castro::do_new_sources() 10 6.25e-05 6.56e-05 7.129e-05 0.00% Amr::writeSmallPlotFile() 1 3.253e-05 4.591e-05 6.383e-05 0.00% Castro::subcycle_advance_ctu() 10 3.658e-05 4.851e-05 6.181e-05 0.00% FabArrayBase::getCPC() 41 3.765e-05 4.759e-05 5.757e-05 0.00% Castro::construct_old_gravity() 10 3.614e-05 4.344e-05 5.099e-05 0.00% Castro::apply_source_to_state() 20 3.557e-05 4.285e-05 4.879e-05 0.00% Amr::defBaseLevel() 1 2.619e-05 3.865e-05 4.852e-05 0.00% Castro::advance() 10 3.686e-05 4.26e-05 4.676e-05 0.00% Castro::construct_new_gravity() 10 3.369e-05 3.887e-05 4.461e-05 0.00% Castro::enforce_speed_limit() 62 2.72e-05 3.014e-05 4.054e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.836e-05 2.5e-05 3.523e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.567e-05 3.38e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.496e-05 3.034e-05 0.00% Castro::expand_state() 10 1.971e-05 2.347e-05 2.599e-05 0.00% Amr::initSubcycle() 1 9.406e-06 1.233e-05 2.342e-05 0.00% Castro::post_timestep() 10 1.272e-05 1.507e-05 1.757e-05 0.00% Gravity::swapTimeLevels() 10 9.335e-06 1.396e-05 1.696e-05 0.00% Gravity::set_mass_offset() 10 9.477e-06 1.101e-05 1.399e-05 0.00% Castro::computeNewDt() 9 8.597e-06 1.059e-05 1.282e-05 0.00% Castro::post_init() 1 3.176e-06 4.595e-06 9.918e-06 0.00% Amr::initialInit() 1 1.226e-06 3.477e-06 9.173e-06 0.00% Castro::create_source_corrector() 10 7.325e-06 8.075e-06 9.004e-06 0.00% Castro::retry_advance_ctu() 10 6.295e-06 7.119e-06 8.723e-06 0.00% Castro::FluxRegCrseInit 10 5.471e-06 7.207e-06 8.263e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.109e-06 4.861e-06 6.886e-06 0.00% Castro::computeInitialDt() 2 4.333e-06 5.206e-06 6.537e-06 0.00% Amr::InitializeInit() 1 1.943e-06 2.605e-06 5.314e-06 0.00% Castro::post_regrid() 1 2.462e-06 3.271e-06 4.01e-06 0.00% Amr::init() 1 1.764e-06 2.377e-06 2.645e-06 0.00% Castro::FluxRegFineAdd() 10 1.833e-06 2.066e-06 2.268e-06 0.00% DistributionMapping::Distribute() 1 9.97e-07 1.143e-06 1.431e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.569 3.57 100.00% Amr::coarseTimeStep() 10 3.352 3.352 3.352 93.90% Amr::timeStep() 10 3.338 3.339 3.34 93.56% Castro::advance() 10 3.322 3.322 3.323 93.09% Castro::subcycle_advance_ctu() 10 3.234 3.244 3.249 91.01% Castro::do_advance_ctu() 10 3.234 3.244 3.249 91.01% Castro::construct_ctu_hydro_source() 10 2.447 2.453 2.457 68.84% Gravity::make_radial_gravity() 21 0.3466 0.3558 0.3624 10.15% AmrLevel::FillPatch() 41 0.1869 0.2103 0.2315 6.49% Gravity::get_new_grav_vector() 11 0.2254 0.2292 0.2307 6.46% Castro::construct_old_gravity() 10 0.2033 0.2126 0.222 6.22% Gravity::get_old_grav_vector() 10 0.2027 0.2119 0.2213 6.20% Castro::construct_new_gravity() 10 0.1997 0.2026 0.2041 5.72% Amr::init() 1 0.202 0.2022 0.2022 5.67% FillPatchIterator::Initialize 41 0.1607 0.1815 0.201 5.63% Amr::initialInit() 1 0.1863 0.1868 0.1871 5.24% Castro::initialize_do_advance() 10 0.1575 0.1724 0.1851 5.18% check_for_negative_density() 10 0.01692 0.1033 0.161 4.51% FillPatchIterator::FillFromLevel0() 41 0.1179 0.1392 0.1602 4.49% FillPatchSingleLevel 41 0.1178 0.1391 0.1601 4.48% Amr::InitializeInit() 1 0.06857 0.1042 0.1565 4.38% Amr::defBaseLevel() 1 0.06857 0.1041 0.1565 4.38% Castro::initData() 1 0.05012 0.08741 0.1393 3.90% Castro::expand_state() 10 0.1002 0.118 0.1317 3.69% Castro::estTimeStep() 21 0.02446 0.08813 0.1282 3.59% Castro::clean_state() 62 0.1147 0.1181 0.1214 3.40% FabArray::ParallelCopy() 41 0.07606 0.1004 0.1194 3.34% Amr::FinalizeInit() 1 0.03062 0.08267 0.1177 3.30% Castro::do_old_sources() 10 0.09138 0.09572 0.1031 2.89% Castro::computeInitialDt() 2 0.002522 0.0548 0.09024 2.53% amrex::Copy() 193 0.06529 0.07446 0.08767 2.46% FabArray::setVal() 143 0.06222 0.07221 0.08579 2.40% Castro::initialize_advance() 10 0.06963 0.07493 0.08468 2.37% FabArray::ParallelCopy_finish() 41 0.03566 0.06071 0.08462 2.37% Castro::do_new_sources() 10 0.05906 0.06635 0.07825 2.19% Castro::computeTemp() 63 0.06692 0.06877 0.07119 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04741 0.04895 0.05056 1.42% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04865 0.05027 1.41% Castro::normalize_species() 62 0.04133 0.04274 0.04452 1.25% StateDataPhysBCFunct::() 41 0.03473 0.03855 0.04334 1.21% StateData::FillBoundary(geom) 41 0.03462 0.03844 0.04323 1.21% FabArray::ParallelCopy_nowait() 41 0.0347 0.03965 0.04191 1.17% Castro::construct_new_source() 50 0.02822 0.03127 0.03586 1.00% Castro::finalize_do_advance() 10 0.0122 0.02514 0.03319 0.93% Gravity::interpolate_monopole_grav() 21 0.02779 0.02836 0.03073 0.86% Castro::construct_new_gravity_source() 10 0.0221 0.0251 0.02946 0.83% Castro::post_init() 1 0.02714 0.02746 0.02778 0.78% Amr::writePlotFile() 2 0.0252 0.02543 0.02581 0.72% Castro::post_timestep() 10 0.01563 0.01611 0.01672 0.47% VisMF::Write(FabArray) 2 0.01192 0.01303 0.01589 0.44% Castro::apply_source_to_state() 20 0.01109 0.01286 0.01424 0.40% FabArray::Saxpy() 20 0.01106 0.01281 0.0142 0.40% Castro::check_for_nan() 20 0.01088 0.01165 0.01269 0.36% MultiFab::contains_nan() 20 0.01086 0.01162 0.01266 0.35% FabArray::setDomainBndry() 41 0.008926 0.01099 0.01237 0.35% Castro::Castro() 1 0.0089 0.01059 0.0112 0.31% Castro::construct_old_source() 50 0.007564 0.009549 0.01005 0.28% Castro::construct_old_gravity_source() 10 0.007513 0.009481 0.009981 0.28% Castro::computeNewDt() 9 0.009269 0.009287 0.009301 0.26% Castro::enforce_min_density() 62 0.007123 0.0074 0.007835 0.22% AmrLevel::AmrLevel(dm) 1 0.005157 0.005952 0.007675 0.22% StateData::define() 4 0.005135 0.005927 0.00764 0.21% Castro::initMFs() 1 0.006121 0.006819 0.007536 0.21% Castro::finalize_advance() 10 0.003018 0.003734 0.004506 0.13% Castro::swap_state_time_levels() 10 0.003075 0.003974 0.004272 0.12% Castro::post_regrid() 1 0.00156 0.0017 0.00198 0.06% Castro::buildMetrics() 1 0.001543 0.001701 0.001812 0.05% Amr::InitAmr() 1 0.0002819 0.0003683 0.0005053 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.215e-05 0.0001625 0.000251 0.01% DistributionMapping::LeastUsedCPUs() 1 6.996e-06 0.0001565 0.0002428 0.01% Castro::enforce_consistent_e() 1 7.895e-05 8.847e-05 9.551e-05 0.00% FabArrayBase::getCPC() 41 6.778e-05 7.325e-05 8.112e-05 0.00% Amr::writeSmallPlotFile() 1 3.253e-05 4.591e-05 6.383e-05 0.00% Castro::enforce_speed_limit() 62 2.72e-05 3.014e-05 4.054e-05 0.00% FabArrayBase::CPC::define() 2 2.232e-05 2.567e-05 3.38e-05 0.00% Amr::initSubcycle() 1 9.406e-06 1.233e-05 2.342e-05 0.00% Gravity::swapTimeLevels() 10 9.335e-06 1.396e-05 1.696e-05 0.00% Gravity::set_mass_offset() 10 9.477e-06 1.101e-05 1.399e-05 0.00% Castro::create_source_corrector() 10 7.325e-06 8.075e-06 9.004e-06 0.00% Castro::retry_advance_ctu() 10 6.295e-06 7.119e-06 8.723e-06 0.00% Castro::FluxRegCrseInit 10 5.471e-06 7.207e-06 8.263e-06 0.00% Castro::FluxRegFineAdd() 10 1.833e-06 2.066e-06 2.268e-06 0.00% DistributionMapping::Distribute() 1 9.97e-07 1.143e-06 1.431e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-13-gecaa14456e3f) finalized