MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-13-gecaa14456e3f) initialized Starting run at 05:21:38 UTC on 2023-10-13. Successfully read inputs file ... Castro git describe: 23.10-35-gf8446cd94 AMReX git describe: 23.10-13-gecaa14456 Microphysics git describe: 23.10-6-g657406dc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01412527 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365793808 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392010035 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327464578 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32793584 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347014462 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33926555 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311885109 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309847449 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309604762 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310389702 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009859027 seconds Ending run at 05:21:41 UTC on 2023-10-13. Run time = 3.543575863 Run time without initialization = 3.35628513 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3133 2.3395 2.4201 68.29% Gravity::make_radial_gravity() 21 0.3071 0.3165 0.328 9.26% check_for_negative_density() 10 0.02086 0.1062 0.1357 3.83% Castro::estTimeStep() 21 0.02235 0.07775 0.1283 3.62% Castro::initData() 1 0.03876 0.07983 0.1242 3.50% amrex::Copy() 193 0.06746 0.07834 0.08763 2.47% FabArray::setVal() 143 0.06298 0.07296 0.08646 2.44% FabArray::ParallelCopy_finish() 41 0.03391 0.05576 0.0806 2.27% Castro::reset_internal_energy(Fab) 1008 0.04627 0.04787 0.0493 1.39% Castro::normalize_species() 62 0.04102 0.0416 0.04234 1.19% FabArray::ParallelCopy_nowait() 41 0.03397 0.03983 0.04152 1.17% StateData::FillBoundary(geom) 41 0.0347 0.03718 0.03959 1.12% FillPatchIterator::Initialize 41 0.02699 0.03148 0.0357 1.01% Castro::construct_new_gravity_source() 10 0.02229 0.02521 0.02975 0.84% Gravity::interpolate_monopole_grav() 21 0.0276 0.0281 0.02956 0.83% Castro::initialize_do_advance() 10 0.01146 0.01728 0.0213 0.60% Castro::computeTemp() 63 0.01686 0.01932 0.0198 0.56% VisMF::Write(FabArray) 2 0.01195 0.01269 0.01518 0.43% Castro::initialize_advance() 10 0.008659 0.01153 0.015 0.42% FabArray::Saxpy() 20 0.01066 0.01309 0.01427 0.40% FabArray::setDomainBndry() 41 0.008765 0.0111 0.01311 0.37% MultiFab::contains_nan() 20 0.01054 0.01155 0.01254 0.35% Amr::writePlotFile() 2 0.006265 0.009017 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.007005 0.00958 0.01019 0.29% Castro::initMFs() 1 0.006203 0.007457 0.009755 0.28% StateData::define() 4 0.005152 0.006096 0.007864 0.22% Castro::enforce_min_density() 62 0.007025 0.007268 0.00748 0.21% Castro::construct_new_source() 50 0.005904 0.006239 0.006488 0.18% main() 1 0.003663 0.004152 0.004519 0.13% Castro::swap_state_time_levels() 10 0.003102 0.004072 0.004434 0.13% Gravity::get_new_grav_vector() 11 0.003067 0.003559 0.003964 0.11% Amr::coarseTimeStep() 10 0.001503 0.002259 0.003329 0.09% Gravity::get_old_grav_vector() 10 0.001642 0.001937 0.002302 0.06% Castro::buildMetrics() 1 0.001445 0.001742 0.002289 0.06% Castro::finalize_do_advance() 10 0.0003736 0.001163 0.001555 0.04% AmrLevel::FillPatch() 41 0.0007164 0.0009887 0.001235 0.03% Amr::InitAmr() 1 0.000247 0.0003389 0.0006052 0.02% Amr::timeStep() 10 0.0001653 0.0002484 0.0005174 0.01% DistributionMapping::LeastUsedCPUs() 1 7.597e-06 0.000305 0.0004026 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002674 0.000285 0.0003202 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001686 0.0002034 0.01% Castro::clean_state() 62 0.0001473 0.000156 0.0001677 0.00% FillPatchIterator::FillFromLevel0() 41 9.93e-05 0.0001156 0.000135 0.00% StateDataPhysBCFunct::() 41 9.947e-05 0.0001055 0.0001252 0.00% Castro::Castro() 1 4.837e-05 6.604e-05 0.0001106 0.00% Castro::do_old_sources() 10 7.689e-05 9.615e-05 0.0001081 0.00% Castro::finalize_advance() 10 8.375e-05 9.766e-05 0.0001072 0.00% Castro::enforce_consistent_e() 1 7.595e-05 8.336e-05 9.118e-05 0.00% FabArray::ParallelCopy() 41 6.855e-05 7.726e-05 8.921e-05 0.00% FillPatchSingleLevel 41 6.308e-05 7.193e-05 8.53e-05 0.00% Castro::construct_old_source() 50 5.772e-05 7.06e-05 7.935e-05 0.00% Castro::construct_old_gravity() 10 4.278e-05 5.143e-05 7.28e-05 0.00% Castro::do_new_sources() 10 6.567e-05 6.851e-05 7.106e-05 0.00% Amr::FinalizeInit() 1 3.766e-06 1.304e-05 6.978e-05 0.00% FabArrayBase::getCPC() 41 4.004e-05 4.835e-05 6.2e-05 0.00% Amr::writeSmallPlotFile() 1 3.126e-05 4.438e-05 6.176e-05 0.00% Castro::construct_new_gravity() 10 3.419e-05 4.388e-05 5.993e-05 0.00% Castro::subcycle_advance_ctu() 10 4.119e-05 5.171e-05 5.721e-05 0.00% Castro::advance() 10 4.077e-05 4.587e-05 5.248e-05 0.00% Castro::apply_source_to_state() 20 4.244e-05 4.578e-05 5.026e-05 0.00% Amr::defBaseLevel() 1 2.557e-05 3.341e-05 4.888e-05 0.00% Castro::enforce_speed_limit() 62 2.763e-05 3.13e-05 3.63e-05 0.00% Castro::post_timestep() 10 1.259e-05 1.773e-05 3.289e-05 0.00% Castro::check_for_nan() 20 2.183e-05 2.458e-05 3.2e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.577e-05 2.345e-05 3.108e-05 0.00% Castro::expand_state() 10 2.141e-05 2.463e-05 2.866e-05 0.00% FabArrayBase::CPC::define() 2 2.239e-05 2.486e-05 2.804e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.356e-05 1.633e-05 0.00% Amr::initSubcycle() 1 8.948e-06 1.123e-05 1.631e-05 0.00% Castro::computeNewDt() 9 8.368e-06 1.012e-05 1.267e-05 0.00% Gravity::set_mass_offset() 10 8.821e-06 1.093e-05 1.201e-05 0.00% Castro::FluxRegCrseInit 10 5.914e-06 6.914e-06 8.743e-06 0.00% Castro::retry_advance_ctu() 10 6.524e-06 7.428e-06 8.565e-06 0.00% Castro::create_source_corrector() 10 6.999e-06 7.674e-06 8.467e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.076e-06 5.107e-06 6.502e-06 0.00% Amr::InitializeInit() 1 1.944e-06 2.74e-06 6.5e-06 0.00% Castro::computeInitialDt() 2 3.996e-06 4.768e-06 5.426e-06 0.00% Castro::post_init() 1 3.246e-06 3.845e-06 4.464e-06 0.00% Castro::post_regrid() 1 1.726e-06 3.2e-06 4.297e-06 0.00% Amr::init() 1 1.944e-06 2.416e-06 3.172e-06 0.00% Castro::FluxRegFineAdd() 10 1.828e-06 2.165e-06 2.853e-06 0.00% Amr::initialInit() 1 1.35e-06 1.839e-06 2.424e-06 0.00% DistributionMapping::Distribute() 1 1.07e-06 1.277e-06 1.644e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.342 3.342 3.342 94.31% Amr::timeStep() 10 3.328 3.33 3.33 93.98% Castro::advance() 10 3.313 3.313 3.314 93.53% Castro::subcycle_advance_ctu() 10 3.224 3.234 3.242 91.48% Castro::do_advance_ctu() 10 3.224 3.234 3.242 91.48% Castro::construct_ctu_hydro_source() 10 2.463 2.467 2.47 69.72% Gravity::make_radial_gravity() 21 0.3243 0.3337 0.3428 9.67% Gravity::get_new_grav_vector() 11 0.2235 0.2245 0.2253 6.36% AmrLevel::FillPatch() 41 0.1873 0.2065 0.2202 6.21% Castro::construct_old_gravity() 10 0.1882 0.1945 0.2025 5.72% Gravity::get_old_grav_vector() 10 0.1871 0.1938 0.2019 5.70% Castro::construct_new_gravity() 10 0.1998 0.2004 0.2013 5.68% FillPatchIterator::Initialize 41 0.1577 0.1758 0.1876 5.30% Amr::init() 1 0.1865 0.1868 0.1869 5.27% Castro::initialize_do_advance() 10 0.1616 0.1721 0.1805 5.09% Amr::initialInit() 1 0.1722 0.1723 0.1725 4.87% FillPatchIterator::FillFromLevel0() 41 0.1154 0.1332 0.151 4.26% FillPatchSingleLevel 41 0.1153 0.1331 0.1509 4.26% Amr::InitializeInit() 1 0.05768 0.101 0.1448 4.09% Amr::defBaseLevel() 1 0.05768 0.101 0.1448 4.09% check_for_negative_density() 10 0.02086 0.1062 0.1357 3.83% Castro::estTimeStep() 21 0.02235 0.07775 0.1283 3.62% Castro::initData() 1 0.04265 0.08355 0.1278 3.61% Castro::expand_state() 10 0.1047 0.118 0.127 3.58% Castro::clean_state() 62 0.1112 0.1156 0.1181 3.33% FabArray::ParallelCopy() 41 0.07556 0.09573 0.1147 3.24% Amr::FinalizeInit() 1 0.02773 0.07126 0.1145 3.23% Castro::do_old_sources() 10 0.08995 0.0927 0.09618 2.71% Castro::computeInitialDt() 2 0.002155 0.04582 0.08928 2.52% amrex::Copy() 193 0.06746 0.07834 0.08763 2.47% FabArray::setVal() 143 0.06298 0.07296 0.08646 2.44% Castro::initialize_advance() 10 0.06829 0.07612 0.08573 2.42% FabArray::ParallelCopy_finish() 41 0.03391 0.05576 0.0806 2.27% Castro::do_new_sources() 10 0.05837 0.06686 0.07843 2.21% Castro::computeTemp() 63 0.06341 0.06747 0.06916 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04656 0.04815 0.04958 1.40% Castro::reset_internal_energy(Fab) 1008 0.04627 0.04787 0.0493 1.39% Castro::normalize_species() 62 0.04102 0.0416 0.04234 1.19% FabArray::ParallelCopy_nowait() 41 0.03405 0.0399 0.04158 1.17% StateDataPhysBCFunct::() 41 0.0348 0.03729 0.03969 1.12% StateData::FillBoundary(geom) 41 0.0347 0.03718 0.03959 1.12% Castro::construct_new_source() 50 0.02839 0.03145 0.03619 1.02% Castro::finalize_do_advance() 10 0.01187 0.02407 0.03336 0.94% Castro::construct_new_gravity_source() 10 0.02229 0.02521 0.02975 0.84% Gravity::interpolate_monopole_grav() 21 0.0276 0.0281 0.02956 0.83% Castro::post_init() 1 0.02465 0.02493 0.02509 0.71% Amr::writePlotFile() 2 0.0242 0.02441 0.02461 0.69% Castro::post_timestep() 10 0.01559 0.01587 0.01628 0.46% VisMF::Write(FabArray) 2 0.01195 0.01269 0.01518 0.43% Castro::apply_source_to_state() 20 0.0107 0.01314 0.01432 0.40% FabArray::Saxpy() 20 0.01066 0.01309 0.01427 0.40% Castro::Castro() 1 0.00941 0.01102 0.01394 0.39% FabArray::setDomainBndry() 41 0.008765 0.0111 0.01311 0.37% Castro::check_for_nan() 20 0.01056 0.01157 0.01257 0.35% MultiFab::contains_nan() 20 0.01054 0.01155 0.01254 0.35% Castro::construct_old_source() 50 0.007066 0.009651 0.01027 0.29% Castro::construct_old_gravity_source() 10 0.007005 0.00958 0.01019 0.29% Castro::initMFs() 1 0.006203 0.007457 0.009755 0.28% Castro::computeNewDt() 9 0.009028 0.009042 0.009048 0.26% AmrLevel::AmrLevel(dm) 1 0.005175 0.006119 0.007893 0.22% StateData::define() 4 0.005152 0.006096 0.007864 0.22% Castro::enforce_min_density() 62 0.007025 0.007268 0.00748 0.21% Castro::finalize_advance() 10 0.00289 0.003685 0.004448 0.13% Castro::swap_state_time_levels() 10 0.003102 0.004072 0.004434 0.13% Castro::buildMetrics() 1 0.001553 0.001889 0.002506 0.07% Castro::post_regrid() 1 0.001564 0.00164 0.001719 0.05% Amr::InitAmr() 1 0.0002564 0.0003501 0.0006215 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.301e-05 0.0003114 0.0004102 0.01% DistributionMapping::LeastUsedCPUs() 1 7.597e-06 0.000305 0.0004026 0.01% Castro::enforce_consistent_e() 1 7.595e-05 8.336e-05 9.118e-05 0.00% FabArrayBase::getCPC() 41 6.47e-05 7.321e-05 8.843e-05 0.00% Amr::writeSmallPlotFile() 1 3.126e-05 4.438e-05 6.176e-05 0.00% Castro::enforce_speed_limit() 62 2.763e-05 3.13e-05 3.63e-05 0.00% FabArrayBase::CPC::define() 2 2.239e-05 2.486e-05 2.804e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.356e-05 1.633e-05 0.00% Amr::initSubcycle() 1 8.948e-06 1.123e-05 1.631e-05 0.00% Gravity::set_mass_offset() 10 8.821e-06 1.093e-05 1.201e-05 0.00% Castro::FluxRegCrseInit 10 5.914e-06 6.914e-06 8.743e-06 0.00% Castro::retry_advance_ctu() 10 6.524e-06 7.428e-06 8.565e-06 0.00% Castro::create_source_corrector() 10 6.999e-06 7.674e-06 8.467e-06 0.00% Castro::FluxRegFineAdd() 10 1.828e-06 2.165e-06 2.853e-06 0.00% DistributionMapping::Distribute() 1 1.07e-06 1.277e-06 1.644e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-13-gecaa14456e3f) finalized