MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-13-gecaa14456e3f) initialized Starting run at 05:24:19 UTC on 2023-10-16. Successfully read inputs file ... Castro git describe: 23.10-36-g466e5a562 AMReX git describe: 23.10-13-gecaa14456 Microphysics git describe: 23.10-10-g8b2c4854 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015329912 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356385733 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3998444 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340365715 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330573883 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352403754 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340281174 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309268401 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318397544 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310173228 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31247716 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009598561 seconds Ending run at 05:24:22 UTC on 2023-10-16. Run time = 3.566540499 Run time without initialization = 3.385478287 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.566 ... 3.567 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2426 2.3405 2.4113 67.61% Gravity::make_radial_gravity() 21 0.3181 0.3312 0.3445 9.66% check_for_negative_density() 10 0.02335 0.09685 0.1978 5.55% Castro::estTimeStep() 21 0.02858 0.07764 0.1178 3.30% Castro::initData() 1 0.0463 0.07839 0.1155 3.24% amrex::Copy() 193 0.06622 0.07939 0.09013 2.53% FabArray::setVal() 143 0.06357 0.07454 0.08975 2.52% FabArray::ParallelCopy_finish() 41 0.03534 0.05991 0.0795 2.23% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04868 0.05149 1.44% Castro::normalize_species() 62 0.0407 0.04227 0.04448 1.25% FabArray::ParallelCopy_nowait() 41 0.03589 0.04138 0.04335 1.22% StateData::FillBoundary(geom) 41 0.03408 0.03847 0.04107 1.15% FillPatchIterator::Initialize 41 0.02749 0.03373 0.03702 1.04% Castro::construct_new_gravity_source() 10 0.02188 0.02591 0.03284 0.92% Gravity::interpolate_monopole_grav() 21 0.02776 0.02865 0.03069 0.86% Castro::initialize_do_advance() 10 0.01244 0.01794 0.02118 0.59% Castro::computeTemp() 63 0.01744 0.01921 0.02058 0.58% VisMF::Write(FabArray) 2 0.01248 0.01313 0.01597 0.45% Castro::initialize_advance() 10 0.009598 0.01212 0.01525 0.43% FabArray::Saxpy() 20 0.01038 0.01292 0.01416 0.40% FabArray::setDomainBndry() 41 0.008843 0.01179 0.01305 0.37% MultiFab::contains_nan() 20 0.01077 0.01157 0.0126 0.35% Amr::writePlotFile() 2 0.006814 0.009929 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.007128 0.009692 0.01022 0.29% Castro::initMFs() 1 0.006222 0.006659 0.007963 0.22% Castro::enforce_min_density() 62 0.00714 0.00737 0.007659 0.21% Castro::construct_new_source() 50 0.005702 0.006105 0.006466 0.18% StateData::define() 4 0.005334 0.005519 0.006036 0.17% Amr::coarseTimeStep() 10 0.002034 0.003956 0.005613 0.16% main() 1 0.003952 0.004401 0.004876 0.14% Castro::swap_state_time_levels() 10 0.002553 0.004109 0.004377 0.12% Gravity::get_new_grav_vector() 11 0.002871 0.0037 0.004098 0.11% Gravity::get_old_grav_vector() 10 0.001468 0.002023 0.002361 0.07% Castro::buildMetrics() 1 0.001457 0.001531 0.001716 0.05% Castro::finalize_do_advance() 10 0.000393 0.001126 0.001522 0.04% AmrLevel::FillPatch() 41 0.0007932 0.001055 0.00143 0.04% Amr::InitAmr() 1 0.0002673 0.0002987 0.0004485 0.01% Amr::timeStep() 10 0.0001597 0.0002241 0.0003828 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002815 0.0002977 0.0003631 0.01% Castro::do_advance_ctu() 10 0.0001457 0.0001814 0.0002106 0.01% DistributionMapping::LeastUsedCPUs() 1 7.119e-06 0.0001574 0.0001825 0.01% Castro::clean_state() 62 0.000148 0.0001596 0.000176 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001208 0.0001454 0.00% Castro::finalize_advance() 10 8.099e-05 9.839e-05 0.0001168 0.00% StateDataPhysBCFunct::() 41 9.408e-05 0.0001033 0.0001167 0.00% Castro::do_old_sources() 10 7.87e-05 9.885e-05 0.0001077 0.00% Castro::enforce_consistent_e() 1 8.213e-05 8.781e-05 9.822e-05 0.00% Castro::construct_old_source() 50 5.949e-05 7.967e-05 9.305e-05 0.00% Castro::Castro() 1 5.739e-05 6.963e-05 8.981e-05 0.00% FabArray::ParallelCopy() 41 7.234e-05 7.95e-05 8.708e-05 0.00% FabArrayBase::CPC::define() 2 2.089e-05 3.213e-05 8.054e-05 0.00% FillPatchSingleLevel 41 6.782e-05 7.455e-05 7.728e-05 0.00% Amr::FinalizeInit() 1 4.353e-06 1.471e-05 7.542e-05 0.00% Castro::do_new_sources() 10 5.812e-05 6.363e-05 6.971e-05 0.00% Castro::construct_old_gravity() 10 3.987e-05 4.954e-05 6.901e-05 0.00% Amr::writeSmallPlotFile() 1 2.703e-05 4.47e-05 6.769e-05 0.00% Castro::construct_new_gravity() 10 3.597e-05 4.302e-05 5.9e-05 0.00% FabArrayBase::getCPC() 41 4.016e-05 4.837e-05 5.855e-05 0.00% Castro::subcycle_advance_ctu() 10 4.274e-05 4.779e-05 5.611e-05 0.00% Castro::apply_source_to_state() 20 3.865e-05 4.617e-05 5.413e-05 0.00% Amr::defBaseLevel() 1 2.673e-05 4.083e-05 5.066e-05 0.00% Castro::advance() 10 3.737e-05 4.305e-05 4.811e-05 0.00% Castro::expand_state() 10 2.125e-05 2.604e-05 3.07e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.681e-05 2.413e-05 3.032e-05 0.00% Castro::enforce_speed_limit() 62 2.647e-05 2.76e-05 2.98e-05 0.00% Castro::check_for_nan() 20 2.165e-05 2.4e-05 2.554e-05 0.00% Castro::post_timestep() 10 1.312e-05 1.493e-05 1.763e-05 0.00% Gravity::swapTimeLevels() 10 1.023e-05 1.447e-05 1.664e-05 0.00% Gravity::set_mass_offset() 10 9.155e-06 1.108e-05 1.309e-05 0.00% Castro::computeNewDt() 9 8.542e-06 9.707e-06 1.176e-05 0.00% Amr::initSubcycle() 1 8.792e-06 9.328e-06 1.009e-05 0.00% Amr::initialInit() 1 1.527e-06 3.347e-06 8.814e-06 0.00% Castro::create_source_corrector() 10 7.08e-06 7.801e-06 8.609e-06 0.00% Castro::FluxRegCrseInit 10 5.925e-06 7.127e-06 8.411e-06 0.00% Castro::retry_advance_ctu() 10 6.989e-06 7.632e-06 8.366e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.829e-06 5.269e-06 7.683e-06 0.00% Castro::computeInitialDt() 2 3.84e-06 4.775e-06 5.589e-06 0.00% Amr::InitializeInit() 1 1.83e-06 2.591e-06 5.155e-06 0.00% Castro::post_regrid() 1 1.817e-06 3.054e-06 4.633e-06 0.00% Castro::post_init() 1 3.342e-06 3.851e-06 4.247e-06 0.00% Amr::init() 1 1.808e-06 2.354e-06 3.173e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.221e-06 2.5e-06 0.00% DistributionMapping::Distribute() 1 9.62e-07 1.237e-06 1.637e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.566 3.566 3.567 100.00% Amr::coarseTimeStep() 10 3.371 3.371 3.371 94.52% Amr::timeStep() 10 3.354 3.356 3.358 94.15% Castro::advance() 10 3.339 3.34 3.34 93.66% Castro::subcycle_advance_ctu() 10 3.246 3.258 3.267 91.60% Castro::do_advance_ctu() 10 3.246 3.258 3.267 91.60% Castro::construct_ctu_hydro_source() 10 2.456 2.458 2.461 69.01% Gravity::make_radial_gravity() 21 0.3352 0.3482 0.3587 10.06% Gravity::get_new_grav_vector() 11 0.2332 0.235 0.2365 6.63% AmrLevel::FillPatch() 41 0.1963 0.2172 0.2348 6.58% Castro::construct_new_gravity() 10 0.2085 0.2097 0.2109 5.91% Castro::construct_old_gravity() 10 0.1924 0.2027 0.2103 5.90% Gravity::get_old_grav_vector() 10 0.1912 0.2019 0.2098 5.88% FillPatchIterator::Initialize 41 0.1676 0.1857 0.2015 5.65% check_for_negative_density() 10 0.02335 0.09685 0.1978 5.55% Castro::initialize_do_advance() 10 0.1637 0.1783 0.1898 5.32% Amr::init() 1 0.1804 0.1806 0.1806 5.06% Amr::initialInit() 1 0.1638 0.1644 0.165 4.63% FillPatchIterator::FillFromLevel0() 41 0.1175 0.1402 0.1535 4.30% FillPatchSingleLevel 41 0.1174 0.1401 0.1534 4.30% Castro::expand_state() 10 0.1087 0.1229 0.1358 3.81% Amr::InitializeInit() 1 0.06815 0.09884 0.1356 3.80% Amr::defBaseLevel() 1 0.06815 0.09884 0.1356 3.80% Castro::clean_state() 62 0.1124 0.1171 0.1238 3.47% Castro::initData() 1 0.05038 0.08246 0.1197 3.36% Castro::estTimeStep() 21 0.02858 0.07764 0.1178 3.30% FabArray::ParallelCopy() 41 0.07799 0.1014 0.1156 3.24% Castro::do_old_sources() 10 0.09131 0.09561 0.09868 2.77% Amr::FinalizeInit() 1 0.02941 0.06556 0.09566 2.68% amrex::Copy() 193 0.06622 0.07939 0.09013 2.53% FabArray::setVal() 143 0.06357 0.07454 0.08975 2.52% Castro::initialize_advance() 10 0.06886 0.07778 0.08974 2.52% Castro::do_new_sources() 10 0.05821 0.0673 0.08324 2.33% FabArray::ParallelCopy_finish() 41 0.03534 0.05991 0.0795 2.23% Castro::computeTemp() 63 0.06438 0.06819 0.07239 2.03% Castro::computeInitialDt() 2 0.00236 0.0391 0.0698 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04694 0.04898 0.05181 1.45% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04868 0.05149 1.44% Castro::normalize_species() 62 0.0407 0.04227 0.04448 1.25% FabArray::ParallelCopy_nowait() 41 0.03603 0.04146 0.04342 1.22% StateDataPhysBCFunct::() 41 0.03419 0.03857 0.04117 1.15% StateData::FillBoundary(geom) 41 0.03408 0.03847 0.04107 1.15% Castro::finalize_do_advance() 10 0.0122 0.02996 0.03971 1.11% Castro::construct_new_source() 50 0.02789 0.03202 0.03931 1.10% Castro::construct_new_gravity_source() 10 0.02188 0.02591 0.03284 0.92% Gravity::interpolate_monopole_grav() 21 0.02776 0.02865 0.03069 0.86% Castro::post_init() 1 0.02552 0.02619 0.02686 0.75% Amr::writePlotFile() 2 0.02517 0.02587 0.02649 0.74% Castro::post_timestep() 10 0.01531 0.01622 0.01738 0.49% VisMF::Write(FabArray) 2 0.01248 0.01313 0.01597 0.45% Castro::apply_source_to_state() 20 0.01041 0.01296 0.01421 0.40% FabArray::Saxpy() 20 0.01038 0.01292 0.01416 0.40% FabArray::setDomainBndry() 41 0.008843 0.01179 0.01305 0.37% Castro::check_for_nan() 20 0.01079 0.01159 0.01263 0.35% MultiFab::contains_nan() 20 0.01077 0.01157 0.0126 0.35% Castro::Castro() 1 0.01028 0.01063 0.0115 0.32% Castro::construct_old_source() 50 0.007187 0.009772 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.007128 0.009692 0.01022 0.29% Castro::computeNewDt() 9 0.009711 0.009718 0.009726 0.27% Castro::initMFs() 1 0.006222 0.006659 0.007963 0.22% Castro::enforce_min_density() 62 0.00714 0.00737 0.007659 0.21% AmrLevel::AmrLevel(dm) 1 0.005359 0.005543 0.006066 0.17% StateData::define() 4 0.005334 0.005519 0.006036 0.17% Castro::finalize_advance() 10 0.002924 0.003708 0.004546 0.13% Castro::swap_state_time_levels() 10 0.002553 0.004109 0.004377 0.12% Castro::buildMetrics() 1 0.00158 0.001671 0.001873 0.05% Castro::post_regrid() 1 0.001542 0.001603 0.001671 0.05% Amr::InitAmr() 1 0.0002765 0.000308 0.0004586 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.226e-05 0.0001639 0.000191 0.01% DistributionMapping::LeastUsedCPUs() 1 7.119e-06 0.0001574 0.0001825 0.01% FabArrayBase::getCPC() 41 6.432e-05 8.049e-05 0.0001391 0.00% Castro::enforce_consistent_e() 1 8.213e-05 8.781e-05 9.822e-05 0.00% FabArrayBase::CPC::define() 2 2.089e-05 3.213e-05 8.054e-05 0.00% Amr::writeSmallPlotFile() 1 2.703e-05 4.47e-05 6.769e-05 0.00% Castro::enforce_speed_limit() 62 2.647e-05 2.76e-05 2.98e-05 0.00% Gravity::swapTimeLevels() 10 1.023e-05 1.447e-05 1.664e-05 0.00% Gravity::set_mass_offset() 10 9.155e-06 1.108e-05 1.309e-05 0.00% Amr::initSubcycle() 1 8.792e-06 9.328e-06 1.009e-05 0.00% Castro::create_source_corrector() 10 7.08e-06 7.801e-06 8.609e-06 0.00% Castro::FluxRegCrseInit 10 5.925e-06 7.127e-06 8.411e-06 0.00% Castro::retry_advance_ctu() 10 6.989e-06 7.632e-06 8.366e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.221e-06 2.5e-06 0.00% DistributionMapping::Distribute() 1 9.62e-07 1.237e-06 1.637e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-13-gecaa14456e3f) finalized