MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-14-g7ee29121ed70) initialized Starting run at 05:22:48 UTC on 2023-10-17. Successfully read inputs file ... Castro git describe: 23.10-36-g466e5a562 AMReX git describe: 23.10-14-g7ee29121e Microphysics git describe: 23.10-10-g8b2c4854 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014609699 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359243931 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3464603 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33363213 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332148796 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355138545 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351507039 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30980728 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310256476 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310936926 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311229468 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009935975 seconds Ending run at 05:22:52 UTC on 2023-10-17. Run time = 3.554740536 Run time without initialization = 3.335282294 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.555 ... 3.555 ... 3.555 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2774 2.3257 2.3743 66.79% Gravity::make_radial_gravity() 21 0.3174 0.3252 0.3389 9.53% Castro::estTimeStep() 21 0.03004 0.1043 0.1618 4.55% Castro::initData() 1 0.03852 0.08969 0.1489 4.19% check_for_negative_density() 10 0.01855 0.06721 0.1201 3.38% FabArray::ParallelCopy_finish() 41 0.03608 0.06499 0.09654 2.72% amrex::Copy() 193 0.06567 0.0787 0.09041 2.54% FabArray::setVal() 143 0.06152 0.07164 0.08458 2.38% Castro::reset_internal_energy(Fab) 1008 0.04615 0.04851 0.05116 1.44% Castro::normalize_species() 62 0.04077 0.04183 0.04324 1.22% FabArray::ParallelCopy_nowait() 41 0.03443 0.04051 0.0429 1.21% StateData::FillBoundary(geom) 41 0.03587 0.03865 0.04185 1.18% FillPatchIterator::Initialize 41 0.02651 0.03379 0.03919 1.10% Castro::construct_new_gravity_source() 10 0.02267 0.02501 0.02946 0.83% Gravity::interpolate_monopole_grav() 21 0.02769 0.02802 0.0284 0.80% Castro::initialize_do_advance() 10 0.01117 0.01818 0.02298 0.65% Castro::computeTemp() 63 0.01858 0.01964 0.02063 0.58% VisMF::Write(FabArray) 2 0.01155 0.01294 0.01578 0.44% Castro::initialize_advance() 10 0.008287 0.01131 0.01464 0.41% FabArray::Saxpy() 20 0.01042 0.01283 0.01437 0.40% MultiFab::contains_nan() 20 0.0109 0.0118 0.01305 0.37% FabArray::setDomainBndry() 41 0.008837 0.0115 0.01254 0.35% Amr::writePlotFile() 2 0.006275 0.009206 0.01145 0.32% Castro::construct_old_gravity_source() 10 0.007042 0.009661 0.0104 0.29% Castro::initMFs() 1 0.006182 0.007497 0.009589 0.27% StateData::define() 4 0.005134 0.00612 0.007786 0.22% Castro::enforce_min_density() 62 0.00708 0.007408 0.007724 0.22% Amr::coarseTimeStep() 10 0.00104 0.006051 0.007679 0.22% Castro::construct_new_source() 50 0.005818 0.00618 0.006419 0.18% Castro::swap_state_time_levels() 10 0.002962 0.0041 0.004912 0.14% main() 1 0.003941 0.004074 0.004229 0.12% Gravity::get_new_grav_vector() 11 0.002669 0.003585 0.004045 0.11% Gravity::get_old_grav_vector() 10 0.001601 0.00206 0.002471 0.07% Castro::buildMetrics() 1 0.001472 0.001766 0.002243 0.06% Castro::finalize_do_advance() 10 0.000426 0.001135 0.001475 0.04% AmrLevel::FillPatch() 41 0.0006684 0.0009059 0.001034 0.03% Amr::InitAmr() 1 0.0002755 0.0003567 0.0004833 0.01% Amr::timeStep() 10 0.0001756 0.0002381 0.0004221 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002848 0.0002923 0.0003106 0.01% Castro::do_advance_ctu() 10 0.0001562 0.0001888 0.0002382 0.01% DistributionMapping::LeastUsedCPUs() 1 6.941e-06 0.0001465 0.0002221 0.01% Castro::clean_state() 62 0.0001423 0.0001589 0.0001825 0.01% FillPatchIterator::FillFromLevel0() 41 9.262e-05 0.0001121 0.0001241 0.00% Castro::do_old_sources() 10 7.244e-05 9.682e-05 0.0001229 0.00% Castro::finalize_advance() 10 9.315e-05 0.0001051 0.0001187 0.00% StateDataPhysBCFunct::() 41 9.153e-05 0.0001033 0.0001108 0.00% Castro::construct_old_source() 50 4.841e-05 7.309e-05 0.000105 0.00% FabArray::ParallelCopy() 41 6.512e-05 7.98e-05 9.626e-05 0.00% Castro::enforce_consistent_e() 1 7.95e-05 8.702e-05 9.595e-05 0.00% Amr::FinalizeInit() 1 3.859e-06 1.499e-05 8.016e-05 0.00% FillPatchSingleLevel 41 5.763e-05 7.016e-05 7.603e-05 0.00% Castro::do_new_sources() 10 5.193e-05 6.601e-05 7.548e-05 0.00% Castro::Castro() 1 5.287e-05 6.349e-05 7.429e-05 0.00% Amr::writeSmallPlotFile() 1 2.723e-05 5.359e-05 6.717e-05 0.00% Castro::construct_old_gravity() 10 3.949e-05 4.691e-05 6.006e-05 0.00% FabArrayBase::getCPC() 41 4.033e-05 4.844e-05 5.787e-05 0.00% Amr::defBaseLevel() 1 2.91e-05 4.24e-05 5.439e-05 0.00% Castro::subcycle_advance_ctu() 10 4.012e-05 4.746e-05 5.314e-05 0.00% Castro::advance() 10 3.604e-05 4.364e-05 5.251e-05 0.00% Castro::apply_source_to_state() 20 3.51e-05 4.511e-05 5.23e-05 0.00% Castro::construct_new_gravity() 10 3.454e-05 4.074e-05 4.77e-05 0.00% Castro::enforce_speed_limit() 62 2.8e-05 2.984e-05 3.302e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.584e-05 2.359e-05 3.221e-05 0.00% Castro::expand_state() 10 2.004e-05 2.632e-05 3.17e-05 0.00% FabArrayBase::CPC::define() 2 2.191e-05 2.518e-05 2.978e-05 0.00% Castro::check_for_nan() 20 2.132e-05 2.403e-05 2.743e-05 0.00% Gravity::swapTimeLevels() 10 9.662e-06 1.459e-05 1.974e-05 0.00% Castro::post_timestep() 10 1.302e-05 1.509e-05 1.757e-05 0.00% Amr::initSubcycle() 1 9.273e-06 1.131e-05 1.584e-05 0.00% Gravity::set_mass_offset() 10 8.128e-06 1.034e-05 1.268e-05 0.00% Castro::computeNewDt() 9 8.787e-06 1.065e-05 1.229e-05 0.00% Castro::create_source_corrector() 10 6.534e-06 8.028e-06 1.069e-05 0.00% Amr::initialInit() 1 1.457e-06 2.535e-06 8.62e-06 0.00% Castro::FluxRegCrseInit 10 6.562e-06 7.616e-06 8.53e-06 0.00% Castro::retry_advance_ctu() 10 6.86e-06 7.617e-06 8.466e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.139e-06 4.998e-06 7.001e-06 0.00% Castro::computeInitialDt() 2 3.653e-06 5.084e-06 6.122e-06 0.00% Amr::InitializeInit() 1 1.902e-06 2.572e-06 5.527e-06 0.00% Castro::post_init() 1 3.065e-06 3.878e-06 5.227e-06 0.00% Castro::post_regrid() 1 1.549e-06 3.118e-06 4.459e-06 0.00% Amr::init() 1 1.822e-06 2.26e-06 2.838e-06 0.00% Castro::FluxRegFineAdd() 10 2.064e-06 2.323e-06 2.763e-06 0.00% DistributionMapping::Distribute() 1 1.065e-06 1.266e-06 1.622e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.555 3.555 3.555 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 93.43% Amr::timeStep() 10 3.303 3.305 3.31 93.10% Castro::advance() 10 3.287 3.288 3.29 92.55% Castro::subcycle_advance_ctu() 10 3.2 3.209 3.216 90.46% Castro::do_advance_ctu() 10 3.2 3.209 3.216 90.46% Castro::construct_ctu_hydro_source() 10 2.409 2.414 2.419 68.06% Gravity::make_radial_gravity() 21 0.3341 0.3422 0.3531 9.93% AmrLevel::FillPatch() 41 0.1977 0.2207 0.2389 6.72% Gravity::get_new_grav_vector() 11 0.2252 0.2275 0.2335 6.57% Amr::init() 1 0.2188 0.2189 0.219 6.16% Castro::construct_old_gravity() 10 0.194 0.2016 0.2093 5.89% Gravity::get_old_grav_vector() 10 0.1933 0.2008 0.2087 5.87% Castro::construct_new_gravity() 10 0.1995 0.2013 0.2077 5.84% FillPatchIterator::Initialize 41 0.1687 0.1899 0.2066 5.81% Amr::initialInit() 1 0.2039 0.2042 0.2045 5.75% Castro::initialize_do_advance() 10 0.1676 0.1818 0.1949 5.48% Amr::InitializeInit() 1 0.05711 0.111 0.1742 4.90% Amr::defBaseLevel() 1 0.0571 0.111 0.1742 4.90% FillPatchIterator::FillFromLevel0() 41 0.1199 0.1446 0.1686 4.74% FillPatchSingleLevel 41 0.1198 0.1445 0.1685 4.74% Castro::estTimeStep() 21 0.03004 0.1043 0.1618 4.55% Castro::initData() 1 0.04237 0.0935 0.1526 4.29% Amr::FinalizeInit() 1 0.02974 0.09318 0.1469 4.13% Castro::expand_state() 10 0.1092 0.1264 0.1399 3.94% FabArray::ParallelCopy() 41 0.07776 0.1057 0.1311 3.69% Castro::clean_state() 62 0.1122 0.1169 0.1212 3.41% check_for_negative_density() 10 0.01855 0.06721 0.1201 3.38% Castro::computeInitialDt() 2 0.002297 0.06563 0.1196 3.36% Castro::do_old_sources() 10 0.09421 0.09802 0.1019 2.87% FabArray::ParallelCopy_finish() 41 0.03608 0.06499 0.09654 2.72% amrex::Copy() 193 0.06567 0.0787 0.09041 2.54% FabArray::setVal() 143 0.06152 0.07164 0.08458 2.38% Castro::initialize_advance() 10 0.06846 0.07499 0.08457 2.38% Castro::do_new_sources() 10 0.05887 0.06559 0.07783 2.19% Castro::computeTemp() 63 0.06508 0.06844 0.07209 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04646 0.0488 0.05145 1.45% Castro::reset_internal_energy(Fab) 1008 0.04615 0.04851 0.05116 1.44% Castro::normalize_species() 62 0.04077 0.04183 0.04324 1.22% FabArray::ParallelCopy_nowait() 41 0.03452 0.04059 0.04297 1.21% StateDataPhysBCFunct::() 41 0.03598 0.03875 0.04195 1.18% StateData::FillBoundary(geom) 41 0.03587 0.03865 0.04185 1.18% Castro::finalize_do_advance() 10 0.01246 0.03064 0.03909 1.10% Castro::construct_new_source() 50 0.0289 0.03119 0.03574 1.01% Castro::construct_new_gravity_source() 10 0.02267 0.02501 0.02946 0.83% Gravity::interpolate_monopole_grav() 21 0.02769 0.02802 0.0284 0.80% Castro::post_init() 1 0.02694 0.02715 0.02734 0.77% Amr::writePlotFile() 2 0.0245 0.02478 0.02497 0.70% Castro::post_timestep() 10 0.01561 0.0164 0.01948 0.55% VisMF::Write(FabArray) 2 0.01155 0.01294 0.01578 0.44% Castro::apply_source_to_state() 20 0.01047 0.01288 0.01442 0.41% FabArray::Saxpy() 20 0.01042 0.01283 0.01437 0.40% Castro::Castro() 1 0.009153 0.01113 0.01368 0.38% Castro::check_for_nan() 20 0.01092 0.01182 0.01308 0.37% MultiFab::contains_nan() 20 0.0109 0.0118 0.01305 0.37% FabArray::setDomainBndry() 41 0.008837 0.0115 0.01254 0.35% Castro::construct_old_source() 50 0.007091 0.009734 0.0105 0.30% Castro::construct_old_gravity_source() 10 0.007042 0.009661 0.0104 0.29% Castro::initMFs() 1 0.006182 0.007497 0.009589 0.27% Castro::computeNewDt() 9 0.009207 0.009219 0.009227 0.26% AmrLevel::AmrLevel(dm) 1 0.00515 0.006143 0.007818 0.22% StateData::define() 4 0.005134 0.00612 0.007786 0.22% Castro::enforce_min_density() 62 0.00708 0.007408 0.007724 0.22% Castro::finalize_advance() 10 0.002923 0.003835 0.005384 0.15% Castro::swap_state_time_levels() 10 0.002962 0.0041 0.004912 0.14% Castro::buildMetrics() 1 0.001582 0.001919 0.002465 0.07% Castro::post_regrid() 1 0.001573 0.001668 0.001891 0.05% Amr::InitAmr() 1 0.0002848 0.000368 0.0004981 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.299e-05 0.0001527 0.0002304 0.01% DistributionMapping::LeastUsedCPUs() 1 6.941e-06 0.0001465 0.0002221 0.01% Castro::enforce_consistent_e() 1 7.95e-05 8.702e-05 9.595e-05 0.00% FabArrayBase::getCPC() 41 6.468e-05 7.362e-05 8.614e-05 0.00% Amr::writeSmallPlotFile() 1 2.723e-05 5.359e-05 6.717e-05 0.00% Castro::enforce_speed_limit() 62 2.8e-05 2.984e-05 3.302e-05 0.00% FabArrayBase::CPC::define() 2 2.191e-05 2.518e-05 2.978e-05 0.00% Gravity::swapTimeLevels() 10 9.662e-06 1.459e-05 1.974e-05 0.00% Amr::initSubcycle() 1 9.273e-06 1.131e-05 1.584e-05 0.00% Gravity::set_mass_offset() 10 8.128e-06 1.034e-05 1.268e-05 0.00% Castro::create_source_corrector() 10 6.534e-06 8.028e-06 1.069e-05 0.00% Castro::FluxRegCrseInit 10 6.562e-06 7.616e-06 8.53e-06 0.00% Castro::retry_advance_ctu() 10 6.86e-06 7.617e-06 8.466e-06 0.00% Castro::FluxRegFineAdd() 10 2.064e-06 2.323e-06 2.763e-06 0.00% DistributionMapping::Distribute() 1 1.065e-06 1.266e-06 1.622e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-14-g7ee29121ed70) finalized