MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-14-g7ee29121ed70) initialized Starting run at 18:04:29 UTC on 2023-10-18. Successfully read inputs file ... Castro git describe: 23.10-38-g0365a6c54 AMReX git describe: 23.10-14-g7ee29121e Microphysics git describe: 23.10-10-g8b2c4854 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014604786 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373678777 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342225736 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33243263 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331667563 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331003593 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.367739921 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316383155 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311512686 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313694524 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311811414 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010305655 seconds Ending run at 18:04:32 UTC on 2023-10-18. Run time = 3.528406625 Run time without initialization = 3.3478885 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.527 ... 3.528 ... 3.528 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3252 2.3577 2.3791 67.43% Gravity::make_radial_gravity() 21 0.3223 0.3355 0.3462 9.81% Castro::initData() 1 0.03854 0.07991 0.1167 3.31% Castro::estTimeStep() 21 0.02583 0.06433 0.1098 3.11% check_for_negative_density() 10 0.04206 0.06385 0.09846 2.79% amrex::Copy() 193 0.07067 0.08147 0.09413 2.67% FabArray::setVal() 143 0.0702 0.07478 0.08165 2.31% FabArray::ParallelCopy_finish() 41 0.03676 0.04649 0.06217 1.76% Castro::reset_internal_energy(Fab) 1008 0.04768 0.05028 0.05524 1.57% Castro::normalize_species() 62 0.0419 0.04287 0.045 1.28% FabArray::ParallelCopy_nowait() 41 0.03643 0.04085 0.0427 1.21% StateData::FillBoundary(geom) 41 0.03388 0.03704 0.041 1.16% FillPatchIterator::Initialize 41 0.02834 0.03229 0.03507 0.99% Gravity::interpolate_monopole_grav() 21 0.02832 0.02867 0.0298 0.84% Castro::construct_new_gravity_source() 10 0.02244 0.02414 0.0259 0.73% Castro::computeTemp() 63 0.0191 0.0203 0.02184 0.62% Castro::initialize_do_advance() 10 0.01254 0.01711 0.01835 0.52% Castro::initialize_advance() 10 0.01065 0.01347 0.01603 0.45% VisMF::Write(FabArray) 2 0.01259 0.01313 0.01557 0.44% MultiFab::contains_nan() 20 0.00996 0.01242 0.01468 0.42% FabArray::Saxpy() 20 0.0118 0.01318 0.01436 0.41% FabArray::setDomainBndry() 41 0.008698 0.01147 0.01301 0.37% Castro::construct_old_gravity_source() 10 0.006892 0.009825 0.01067 0.30% Amr::writePlotFile() 2 0.006516 0.008939 0.009532 0.27% Castro::initMFs() 1 0.006403 0.006857 0.007959 0.23% Castro::enforce_min_density() 62 0.005925 0.006278 0.007057 0.20% Castro::construct_new_source() 50 0.006179 0.006533 0.006867 0.19% StateData::define() 4 0.005293 0.005586 0.00603 0.17% Castro::swap_state_time_levels() 10 0.003357 0.004501 0.004927 0.14% main() 1 0.003217 0.004118 0.004823 0.14% Gravity::get_new_grav_vector() 11 0.00295 0.003583 0.003861 0.11% Gravity::get_old_grav_vector() 10 0.001724 0.002217 0.003687 0.10% Amr::coarseTimeStep() 10 0.001057 0.001673 0.002281 0.06% Castro::buildMetrics() 1 0.001499 0.00158 0.001734 0.05% Castro::finalize_do_advance() 10 0.0005053 0.00109 0.00137 0.04% AmrLevel::FillPatch() 41 0.0007051 0.0008431 0.001056 0.03% Amr::timeStep() 10 0.000174 0.0002432 0.0004766 0.01% Amr::InitAmr() 1 0.000255 0.0002886 0.0004398 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002854 0.0003237 0.0003979 0.01% Castro::do_advance_ctu() 10 0.0001266 0.000187 0.0002435 0.01% DistributionMapping::LeastUsedCPUs() 1 6.518e-06 0.000166 0.0001952 0.01% Castro::clean_state() 62 0.0001392 0.0001574 0.0001899 0.01% Castro::Castro() 1 5.609e-05 8.215e-05 0.000142 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001025 0.0001154 0.0001261 0.00% Castro::do_old_sources() 10 8.093e-05 9.634e-05 0.0001192 0.00% Amr::FinalizeInit() 1 4.32e-06 1.999e-05 0.000119 0.00% Castro::finalize_advance() 10 7.679e-05 9.904e-05 0.0001162 0.00% StateDataPhysBCFunct::() 41 8.239e-05 9.771e-05 0.0001103 0.00% Castro::enforce_consistent_e() 1 7.647e-05 8.831e-05 0.0001012 0.00% FabArray::ParallelCopy() 41 6.413e-05 7.368e-05 8.19e-05 0.00% Castro::construct_old_source() 50 5.931e-05 7.023e-05 8.153e-05 0.00% Castro::subcycle_advance_ctu() 10 4.724e-05 6.41e-05 8.13e-05 0.00% Castro::enforce_speed_limit() 62 2.761e-05 3.705e-05 7.961e-05 0.00% FillPatchSingleLevel 41 5.763e-05 6.625e-05 7.483e-05 0.00% Castro::do_new_sources() 10 5.482e-05 6.592e-05 7.334e-05 0.00% Castro::apply_source_to_state() 20 3.397e-05 4.797e-05 7.084e-05 0.00% FabArrayBase::getCPC() 41 4.567e-05 5.464e-05 6.944e-05 0.00% Amr::writeSmallPlotFile() 1 3.032e-05 4.891e-05 6.813e-05 0.00% Castro::construct_old_gravity() 10 3.723e-05 5.205e-05 6.515e-05 0.00% Castro::construct_new_gravity() 10 3.464e-05 4.165e-05 5.446e-05 0.00% Castro::advance() 10 4.087e-05 4.776e-05 5.343e-05 0.00% Amr::defBaseLevel() 1 2.578e-05 3.786e-05 4.51e-05 0.00% FabArrayBase::CPC::define() 2 2.28e-05 3.372e-05 4.183e-05 0.00% Castro::expand_state() 10 1.928e-05 2.628e-05 3.689e-05 0.00% Castro::check_for_nan() 20 2.007e-05 2.306e-05 3.042e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.749e-05 2.131e-05 2.579e-05 0.00% Castro::post_timestep() 10 1.207e-05 1.677e-05 2.265e-05 0.00% Gravity::swapTimeLevels() 10 1.355e-05 1.597e-05 1.759e-05 0.00% Gravity::set_mass_offset() 10 8.731e-06 1.11e-05 1.427e-05 0.00% Castro::computeNewDt() 9 8.854e-06 1.05e-05 1.295e-05 0.00% Castro::create_source_corrector() 10 7.649e-06 8.911e-06 1.205e-05 0.00% Amr::initSubcycle() 1 9.107e-06 9.975e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.426e-06 7.89e-06 9.045e-06 0.00% Castro::retry_advance_ctu() 10 6.241e-06 7.254e-06 8.341e-06 0.00% Amr::initialInit() 1 1.704e-06 3.331e-06 7.821e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.691e-06 4.84e-06 6.908e-06 0.00% Castro::computeInitialDt() 2 4.081e-06 4.755e-06 6.136e-06 0.00% Castro::post_init() 1 3.037e-06 4.345e-06 6.118e-06 0.00% Amr::InitializeInit() 1 1.869e-06 2.488e-06 5.089e-06 0.00% Castro::post_regrid() 1 2.335e-06 3.235e-06 4.484e-06 0.00% Amr::init() 1 1.99e-06 2.394e-06 2.881e-06 0.00% Castro::FluxRegFineAdd() 10 2.042e-06 2.237e-06 2.394e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.027e-06 1.174e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.527 3.528 3.528 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 94.46% Amr::timeStep() 10 3.32 3.321 3.321 94.13% Castro::advance() 10 3.304 3.305 3.305 93.67% Castro::subcycle_advance_ctu() 10 3.219 3.222 3.224 91.37% Castro::do_advance_ctu() 10 3.219 3.222 3.224 91.37% Castro::construct_ctu_hydro_source() 10 2.439 2.443 2.445 69.29% Gravity::make_radial_gravity() 21 0.3392 0.3525 0.3614 10.24% Gravity::get_new_grav_vector() 11 0.2232 0.224 0.2259 6.40% Castro::construct_old_gravity() 10 0.2036 0.2135 0.2208 6.26% Gravity::get_old_grav_vector() 10 0.2026 0.2127 0.2201 6.24% AmrLevel::FillPatch() 41 0.1828 0.2009 0.2144 6.08% Castro::construct_new_gravity() 10 0.1989 0.1995 0.2009 5.69% FillPatchIterator::Initialize 41 0.1531 0.1686 0.1811 5.13% Castro::initialize_do_advance() 10 0.1597 0.1701 0.1807 5.12% Amr::init() 1 0.1799 0.1801 0.1801 5.10% Amr::initialInit() 1 0.1651 0.1653 0.1654 4.69% Amr::InitializeInit() 1 0.05875 0.1006 0.1369 3.88% Amr::defBaseLevel() 1 0.05875 0.1006 0.1369 3.88% FillPatchIterator::FillFromLevel0() 41 0.1146 0.1248 0.1356 3.84% FillPatchSingleLevel 41 0.1144 0.1247 0.1354 3.84% Castro::clean_state() 62 0.1152 0.1193 0.125 3.54% Castro::initData() 1 0.04273 0.08393 0.121 3.43% Castro::expand_state() 10 0.1027 0.112 0.117 3.31% Castro::estTimeStep() 21 0.02583 0.06433 0.1098 3.11% Amr::FinalizeInit() 1 0.02843 0.06469 0.1066 3.02% Castro::do_old_sources() 10 0.09439 0.0979 0.1015 2.88% FabArray::ParallelCopy() 41 0.07825 0.08751 0.09878 2.80% check_for_negative_density() 10 0.04206 0.06385 0.09846 2.79% amrex::Copy() 193 0.07067 0.08147 0.09413 2.67% Castro::initialize_advance() 10 0.07733 0.07924 0.08201 2.32% FabArray::setVal() 143 0.0702 0.07478 0.08165 2.31% Castro::computeInitialDt() 2 0.002427 0.03874 0.08062 2.28% Castro::computeTemp() 63 0.06768 0.0709 0.0774 2.19% Castro::do_new_sources() 10 0.06091 0.06422 0.06894 1.95% FabArray::ParallelCopy_finish() 41 0.03676 0.04649 0.06217 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04798 0.0506 0.05556 1.57% Castro::reset_internal_energy(Fab) 1008 0.04768 0.05028 0.05524 1.57% Castro::normalize_species() 62 0.0419 0.04287 0.045 1.28% FabArray::ParallelCopy_nowait() 41 0.03653 0.04094 0.04278 1.21% StateDataPhysBCFunct::() 41 0.03396 0.03714 0.04111 1.16% StateData::FillBoundary(geom) 41 0.03388 0.03704 0.041 1.16% Castro::construct_new_source() 50 0.02862 0.03067 0.03251 0.92% Gravity::interpolate_monopole_grav() 21 0.02832 0.02867 0.0298 0.84% Castro::construct_new_gravity_source() 10 0.02244 0.02414 0.0259 0.73% Castro::post_init() 1 0.02533 0.02546 0.0256 0.73% Amr::writePlotFile() 2 0.02504 0.02514 0.02532 0.72% Castro::finalize_do_advance() 10 0.01253 0.01743 0.02125 0.60% Castro::post_timestep() 10 0.01554 0.01592 0.01621 0.46% VisMF::Write(FabArray) 2 0.01259 0.01313 0.01557 0.44% Castro::check_for_nan() 20 0.009984 0.01244 0.0147 0.42% MultiFab::contains_nan() 20 0.00996 0.01242 0.01468 0.42% Castro::apply_source_to_state() 20 0.01185 0.01323 0.01443 0.41% FabArray::Saxpy() 20 0.0118 0.01318 0.01436 0.41% FabArray::setDomainBndry() 41 0.008698 0.01147 0.01301 0.37% Castro::Castro() 1 0.01029 0.01085 0.01176 0.33% Castro::construct_old_source() 50 0.006951 0.009896 0.01074 0.30% Castro::construct_old_gravity_source() 10 0.006892 0.009825 0.01067 0.30% Castro::computeNewDt() 9 0.009251 0.009259 0.00927 0.26% Castro::initMFs() 1 0.006403 0.006857 0.007959 0.23% Castro::enforce_min_density() 62 0.005925 0.006278 0.007057 0.20% AmrLevel::AmrLevel(dm) 1 0.005313 0.005608 0.006052 0.17% StateData::define() 4 0.005293 0.005586 0.00603 0.17% Castro::swap_state_time_levels() 10 0.003357 0.004501 0.004927 0.14% Castro::finalize_advance() 10 0.003257 0.003431 0.003568 0.10% Castro::buildMetrics() 1 0.001612 0.001707 0.001883 0.05% Castro::post_regrid() 1 0.001552 0.001602 0.001643 0.05% Amr::InitAmr() 1 0.0002645 0.0002986 0.0004504 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.17e-05 0.0001719 0.0002032 0.01% DistributionMapping::LeastUsedCPUs() 1 6.518e-06 0.000166 0.0001952 0.01% Castro::enforce_consistent_e() 1 7.647e-05 8.831e-05 0.0001012 0.00% FabArrayBase::getCPC() 41 7.111e-05 8.836e-05 0.0001 0.00% Castro::enforce_speed_limit() 62 2.761e-05 3.705e-05 7.961e-05 0.00% Amr::writeSmallPlotFile() 1 3.032e-05 4.891e-05 6.813e-05 0.00% FabArrayBase::CPC::define() 2 2.28e-05 3.372e-05 4.183e-05 0.00% Gravity::swapTimeLevels() 10 1.355e-05 1.597e-05 1.759e-05 0.00% Gravity::set_mass_offset() 10 8.731e-06 1.11e-05 1.427e-05 0.00% Castro::create_source_corrector() 10 7.649e-06 8.911e-06 1.205e-05 0.00% Amr::initSubcycle() 1 9.107e-06 9.975e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.426e-06 7.89e-06 9.045e-06 0.00% Castro::retry_advance_ctu() 10 6.241e-06 7.254e-06 8.341e-06 0.00% Castro::FluxRegFineAdd() 10 2.042e-06 2.237e-06 2.394e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.027e-06 1.174e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-14-g7ee29121ed70) finalized