MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-14-g7ee29121ed70) initialized Starting run at 05:24:42 UTC on 2023-10-18. Successfully read inputs file ... Castro git describe: 23.10-37-g951276ed7 AMReX git describe: 23.10-14-g7ee29121e Microphysics git describe: 23.10-10-g8b2c4854 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017367179 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371064788 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353826375 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332101174 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331819626 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358919281 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336465427 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315435069 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317551122 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316280205 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317354643 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00959545 seconds Ending run at 05:24:46 UTC on 2023-10-18. Run time = 3.618968008 Run time without initialization = 3.36518469 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.619 ... 3.619 ... 3.619 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2865 2.3515 2.4249 67.00% Gravity::make_radial_gravity() 21 0.3307 0.3418 0.3524 9.74% check_for_negative_density() 10 0.03175 0.1085 0.1743 4.82% Castro::estTimeStep() 21 0.03787 0.1144 0.1737 4.80% Castro::initData() 1 0.03869 0.08976 0.1648 4.55% FabArray::ParallelCopy_finish() 41 0.03753 0.05231 0.09239 2.55% amrex::Copy() 193 0.06318 0.07467 0.08371 2.31% FabArray::setVal() 143 0.05991 0.06814 0.07933 2.19% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04929 0.05165 1.43% Castro::normalize_species() 62 0.04108 0.04246 0.04471 1.24% FabArray::ParallelCopy_nowait() 41 0.03399 0.0398 0.04191 1.16% StateData::FillBoundary(geom) 41 0.03424 0.03715 0.04061 1.12% FillPatchIterator::Initialize 41 0.02687 0.03139 0.03436 0.95% Gravity::interpolate_monopole_grav() 21 0.02823 0.02874 0.02984 0.82% Castro::construct_new_gravity_source() 10 0.02209 0.02441 0.02784 0.77% Castro::computeTemp() 63 0.01761 0.01979 0.02156 0.60% Castro::initialize_do_advance() 10 0.01168 0.01716 0.02018 0.56% VisMF::Write(FabArray) 2 0.01166 0.01298 0.01823 0.50% Castro::initialize_advance() 10 0.004243 0.01032 0.01384 0.38% Amr::writePlotFile() 2 0.006526 0.01205 0.0138 0.38% FabArray::Saxpy() 20 0.01085 0.01269 0.01365 0.38% FabArray::setDomainBndry() 41 0.008805 0.01113 0.01269 0.35% MultiFab::contains_nan() 20 0.009482 0.01054 0.01144 0.32% Castro::initMFs() 1 0.006235 0.007269 0.01013 0.28% Castro::construct_old_gravity_source() 10 0.007091 0.009558 0.01006 0.28% StateData::define() 4 0.005169 0.005999 0.007977 0.22% Castro::enforce_min_density() 62 0.005728 0.006083 0.006596 0.18% Castro::construct_new_source() 50 0.005859 0.006276 0.006529 0.18% Gravity::get_new_grav_vector() 11 0.002924 0.003819 0.005324 0.15% Castro::swap_state_time_levels() 10 0.003075 0.004113 0.004861 0.13% main() 1 0.003604 0.003854 0.004082 0.11% Amr::coarseTimeStep() 10 0.001307 0.002175 0.00273 0.08% Gravity::get_old_grav_vector() 10 0.001565 0.001965 0.002424 0.07% Castro::buildMetrics() 1 0.001488 0.001714 0.002258 0.06% Castro::finalize_do_advance() 10 0.000409 0.001202 0.00155 0.04% AmrLevel::FillPatch() 41 0.0007246 0.0008941 0.001023 0.03% Amr::InitAmr() 1 0.0002657 0.0003444 0.0004882 0.01% Amr::timeStep() 10 0.0001765 0.0002226 0.0003841 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002884 0.0002993 0.0003436 0.01% DistributionMapping::LeastUsedCPUs() 1 6.79e-06 0.0001784 0.0002611 0.01% Castro::clean_state() 62 0.0001299 0.0001515 0.0001844 0.01% Castro::do_advance_ctu() 10 0.0001199 0.0001594 0.0001809 0.00% Castro::enforce_consistent_e() 1 8.029e-05 0.0001039 0.0001658 0.00% FillPatchIterator::FillFromLevel0() 41 9.296e-05 0.0001119 0.0001249 0.00% Castro::finalize_advance() 10 7.945e-05 9.917e-05 0.0001226 0.00% Castro::do_old_sources() 10 6.641e-05 9.498e-05 0.0001187 0.00% StateDataPhysBCFunct::() 41 8.3e-05 9.57e-05 0.0001071 0.00% Castro::construct_old_source() 50 4.962e-05 6.804e-05 8.788e-05 0.00% Castro::Castro() 1 5.929e-05 7.012e-05 8.328e-05 0.00% FillPatchSingleLevel 41 5.734e-05 6.671e-05 7.923e-05 0.00% FabArray::ParallelCopy() 41 6.706e-05 7.256e-05 7.704e-05 0.00% FabArrayBase::getCPC() 41 4.584e-05 5.299e-05 7.062e-05 0.00% Amr::FinalizeInit() 1 5.011e-06 1.455e-05 7.03e-05 0.00% Castro::subcycle_advance_ctu() 10 4.588e-05 5.457e-05 7.025e-05 0.00% Castro::do_new_sources() 10 5.141e-05 6.037e-05 6.575e-05 0.00% Amr::writeSmallPlotFile() 1 2.787e-05 4.664e-05 6.448e-05 0.00% Castro::advance() 10 3.72e-05 4.45e-05 5.122e-05 0.00% Castro::construct_old_gravity() 10 3.729e-05 4.365e-05 5.084e-05 0.00% Castro::apply_source_to_state() 20 3.397e-05 4.467e-05 5.08e-05 0.00% Castro::construct_new_gravity() 10 3.355e-05 3.936e-05 4.609e-05 0.00% Castro::enforce_speed_limit() 62 2.726e-05 3.016e-05 3.672e-05 0.00% FabArrayBase::CPC::define() 2 2.274e-05 2.627e-05 3.409e-05 0.00% Amr::defBaseLevel() 1 2.43e-05 2.85e-05 3.264e-05 0.00% Castro::check_for_nan() 20 1.873e-05 2.249e-05 3.026e-05 0.00% Castro::expand_state() 10 1.999e-05 2.435e-05 2.877e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.667e-05 2.453e-05 2.819e-05 0.00% Gravity::swapTimeLevels() 10 1.113e-05 1.574e-05 2.564e-05 0.00% Castro::computeInitialDt() 2 4.38e-06 7.228e-06 2.06e-05 0.00% Castro::post_timestep() 10 1.149e-05 1.513e-05 1.776e-05 0.00% Amr::initSubcycle() 1 9.133e-06 1.142e-05 1.693e-05 0.00% Castro::computeNewDt() 9 8.649e-06 1.008e-05 1.27e-05 0.00% Gravity::set_mass_offset() 10 8.994e-06 1.066e-05 1.265e-05 0.00% Castro::create_source_corrector() 10 7.064e-06 8.114e-06 9.36e-06 0.00% Castro::retry_advance_ctu() 10 6.941e-06 7.654e-06 8.797e-06 0.00% Castro::FluxRegCrseInit 10 6.282e-06 6.959e-06 7.813e-06 0.00% Castro::post_regrid() 1 2.779e-06 4.124e-06 7.592e-06 0.00% Amr::init() 1 2.273e-06 3.2e-06 7.525e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.883e-06 5.668e-06 7.43e-06 0.00% Amr::InitializeInit() 1 1.876e-06 2.743e-06 5.165e-06 0.00% Castro::post_init() 1 3.34e-06 4.064e-06 4.619e-06 0.00% Castro::FluxRegFineAdd() 10 2.065e-06 2.341e-06 2.719e-06 0.00% Amr::initialInit() 1 1.428e-06 1.71e-06 2.062e-06 0.00% DistributionMapping::Distribute() 1 8.57e-07 1.269e-06 1.561e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.619 3.619 3.619 100.00% Amr::coarseTimeStep() 10 3.352 3.352 3.352 92.61% Amr::timeStep() 10 3.338 3.339 3.339 92.27% Castro::advance() 10 3.322 3.323 3.323 91.83% Castro::subcycle_advance_ctu() 10 3.242 3.249 3.262 90.13% Castro::do_advance_ctu() 10 3.242 3.249 3.262 90.13% Castro::construct_ctu_hydro_source() 10 2.478 2.481 2.484 68.64% Gravity::make_radial_gravity() 21 0.3465 0.3575 0.3662 10.12% Amr::init() 1 0.2531 0.2533 0.2534 7.00% Gravity::get_new_grav_vector() 11 0.237 0.239 0.2404 6.64% Amr::initialInit() 1 0.2348 0.2355 0.236 6.52% AmrLevel::FillPatch() 41 0.181 0.2017 0.2205 6.09% Castro::construct_old_gravity() 10 0.1963 0.2024 0.2093 5.78% Gravity::get_old_grav_vector() 10 0.1957 0.2018 0.2087 5.77% Castro::construct_new_gravity() 10 0.1993 0.2011 0.202 5.58% FillPatchIterator::Initialize 41 0.1537 0.1722 0.1968 5.44% Amr::InitializeInit() 1 0.05847 0.1116 0.1927 5.33% Amr::defBaseLevel() 1 0.05846 0.1116 0.1927 5.33% Amr::FinalizeInit() 1 0.04314 0.1239 0.1763 4.87% Castro::initialize_do_advance() 10 0.1562 0.1694 0.1763 4.87% check_for_negative_density() 10 0.03175 0.1085 0.1743 4.82% Castro::estTimeStep() 21 0.03787 0.1144 0.1737 4.80% Castro::initData() 1 0.04269 0.09416 0.1706 4.71% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1297 0.1611 4.45% FillPatchSingleLevel 41 0.1148 0.1296 0.161 4.45% Castro::computeInitialDt() 2 0.002969 0.08426 0.1375 3.80% Castro::expand_state() 10 0.1005 0.1154 0.1289 3.56% FabArray::ParallelCopy() 41 0.07774 0.09226 0.1266 3.50% Castro::clean_state() 62 0.1138 0.117 0.1234 3.41% Castro::do_old_sources() 10 0.08929 0.09245 0.09639 2.66% FabArray::ParallelCopy_finish() 41 0.03753 0.05231 0.09239 2.55% amrex::Copy() 193 0.06318 0.07467 0.08371 2.31% FabArray::setVal() 143 0.05991 0.06814 0.07933 2.19% Castro::initialize_advance() 10 0.05656 0.06993 0.07765 2.15% Castro::do_new_sources() 10 0.05896 0.06536 0.07429 2.05% Castro::computeTemp() 63 0.06685 0.06938 0.07356 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04726 0.04959 0.052 1.44% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04929 0.05165 1.43% Castro::normalize_species() 62 0.04108 0.04246 0.04471 1.24% FabArray::ParallelCopy_nowait() 41 0.03408 0.03988 0.04198 1.16% StateDataPhysBCFunct::() 41 0.03434 0.03725 0.04071 1.12% StateData::FillBoundary(geom) 41 0.03424 0.03715 0.04061 1.12% Castro::post_init() 1 0.03846 0.03894 0.03964 1.10% Castro::construct_new_source() 50 0.02827 0.03069 0.03433 0.95% Gravity::interpolate_monopole_grav() 21 0.02823 0.02874 0.02984 0.82% Castro::finalize_do_advance() 10 0.01233 0.02177 0.0288 0.80% Amr::writePlotFile() 2 0.02673 0.02739 0.02823 0.78% Castro::construct_new_gravity_source() 10 0.02209 0.02441 0.02784 0.77% VisMF::Write(FabArray) 2 0.01166 0.01298 0.01823 0.50% Castro::post_timestep() 10 0.01546 0.01573 0.01601 0.44% Castro::Castro() 1 0.01002 0.01121 0.01418 0.39% Castro::apply_source_to_state() 20 0.0109 0.01274 0.0137 0.38% FabArray::Saxpy() 20 0.01085 0.01269 0.01365 0.38% FabArray::setDomainBndry() 41 0.008805 0.01113 0.01269 0.35% Castro::check_for_nan() 20 0.009503 0.01056 0.01146 0.32% MultiFab::contains_nan() 20 0.009482 0.01054 0.01144 0.32% Castro::initMFs() 1 0.006235 0.007269 0.01013 0.28% Castro::construct_old_source() 50 0.007144 0.009626 0.01013 0.28% Castro::construct_old_gravity_source() 10 0.007091 0.009558 0.01006 0.28% Castro::computeNewDt() 9 0.009612 0.009628 0.009642 0.27% AmrLevel::AmrLevel(dm) 1 0.005194 0.006024 0.008004 0.22% StateData::define() 4 0.005169 0.005999 0.007977 0.22% Castro::enforce_min_density() 62 0.005728 0.006083 0.006596 0.18% Castro::swap_state_time_levels() 10 0.003075 0.004113 0.004861 0.13% Castro::finalize_advance() 10 0.002926 0.003422 0.003884 0.11% Castro::post_regrid() 1 0.001562 0.001998 0.00299 0.08% Castro::buildMetrics() 1 0.001604 0.001859 0.00247 0.07% Amr::InitAmr() 1 0.0002756 0.0003558 0.0005051 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.309e-05 0.0001853 0.00027 0.01% DistributionMapping::LeastUsedCPUs() 1 6.79e-06 0.0001784 0.0002611 0.01% Castro::enforce_consistent_e() 1 8.029e-05 0.0001039 0.0001658 0.00% FabArrayBase::getCPC() 41 6.858e-05 7.926e-05 9.441e-05 0.00% Amr::writeSmallPlotFile() 1 2.787e-05 4.664e-05 6.448e-05 0.00% Castro::enforce_speed_limit() 62 2.726e-05 3.016e-05 3.672e-05 0.00% FabArrayBase::CPC::define() 2 2.274e-05 2.627e-05 3.409e-05 0.00% Gravity::swapTimeLevels() 10 1.113e-05 1.574e-05 2.564e-05 0.00% Amr::initSubcycle() 1 9.133e-06 1.142e-05 1.693e-05 0.00% Gravity::set_mass_offset() 10 8.994e-06 1.066e-05 1.265e-05 0.00% Castro::create_source_corrector() 10 7.064e-06 8.114e-06 9.36e-06 0.00% Castro::retry_advance_ctu() 10 6.941e-06 7.654e-06 8.797e-06 0.00% Castro::FluxRegCrseInit 10 6.282e-06 6.959e-06 7.813e-06 0.00% Castro::FluxRegFineAdd() 10 2.065e-06 2.341e-06 2.719e-06 0.00% DistributionMapping::Distribute() 1 8.57e-07 1.269e-06 1.561e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-14-g7ee29121ed70) finalized