MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-14-g7ee29121ed70) initialized Starting run at 05:20:24 UTC on 2023-10-19. Successfully read inputs file ... Castro git describe: 23.10-39-g2acd2e013 AMReX git describe: 23.10-14-g7ee29121e Microphysics git describe: 23.10-10-g8b2c4854 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016212667 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357228873 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339484442 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333584271 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.379600464 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337816389 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351443867 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308979725 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30846355 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308525919 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309843398 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009551858 seconds Ending run at 05:20:27 UTC on 2023-10-19. Run time = 3.528847613 Run time without initialization = 3.349656771 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.528 ... 3.528 ... 3.529 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2625 2.3353 2.4125 68.36% Gravity::make_radial_gravity() 21 0.3094 0.3172 0.3286 9.31% check_for_negative_density() 10 0.02066 0.09999 0.1759 4.99% Castro::initData() 1 0.03856 0.07641 0.1138 3.22% Castro::estTimeStep() 21 0.02636 0.06988 0.1109 3.14% FabArray::setVal() 143 0.06737 0.07633 0.08794 2.49% amrex::Copy() 193 0.06576 0.07845 0.08764 2.48% FabArray::ParallelCopy_finish() 41 0.03326 0.05896 0.08105 2.30% Castro::reset_internal_energy(Fab) 1008 0.04658 0.04876 0.05186 1.47% Castro::normalize_species() 62 0.04091 0.04208 0.04343 1.23% FabArray::ParallelCopy_nowait() 41 0.0331 0.03948 0.0421 1.19% StateData::FillBoundary(geom) 41 0.03427 0.0364 0.03925 1.11% FillPatchIterator::Initialize 41 0.02717 0.03211 0.0381 1.08% Gravity::interpolate_monopole_grav() 21 0.02818 0.0284 0.02897 0.82% Castro::construct_new_gravity_source() 10 0.02126 0.02317 0.0245 0.69% Castro::initialize_do_advance() 10 0.01202 0.01752 0.02285 0.65% Castro::computeTemp() 63 0.01801 0.01959 0.02028 0.57% VisMF::Write(FabArray) 2 0.01233 0.01298 0.01629 0.46% FabArray::Saxpy() 20 0.01045 0.01289 0.01502 0.43% Castro::initialize_advance() 10 0.009862 0.01212 0.01476 0.42% FabArray::setDomainBndry() 41 0.008697 0.01131 0.01262 0.36% MultiFab::contains_nan() 20 0.009803 0.01045 0.01122 0.32% Amr::writePlotFile() 2 0.006506 0.01022 0.01106 0.31% Castro::construct_old_gravity_source() 10 0.006555 0.009233 0.01009 0.29% Amr::coarseTimeStep() 10 0.001365 0.005842 0.007889 0.22% Castro::construct_new_source() 50 0.005659 0.006417 0.007115 0.20% Castro::enforce_min_density() 62 0.005799 0.006088 0.006621 0.19% Castro::initMFs() 1 0.006175 0.006204 0.00624 0.18% StateData::define() 4 0.00512 0.005141 0.005161 0.15% Castro::swap_state_time_levels() 10 0.002844 0.004162 0.004376 0.12% main() 1 0.003264 0.003811 0.004265 0.12% Gravity::get_new_grav_vector() 11 0.002915 0.003463 0.003886 0.11% Gravity::get_old_grav_vector() 10 0.001624 0.001923 0.002283 0.06% Castro::buildMetrics() 1 0.001443 0.00147 0.001512 0.04% Castro::finalize_do_advance() 10 0.0004488 0.001103 0.001357 0.04% AmrLevel::FillPatch() 41 0.0006908 0.0008093 0.0009415 0.03% Amr::timeStep() 10 0.000166 0.0002193 0.0004137 0.01% Amr::InitAmr() 1 0.0002542 0.0002864 0.0003844 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000274 0.0002914 0.0003477 0.01% Castro::clean_state() 62 0.0001432 0.0001715 0.0002765 0.01% Castro::do_advance_ctu() 10 0.0001462 0.000173 0.0002096 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001073 0.0001193 0.000149 0.00% DistributionMapping::LeastUsedCPUs() 1 6.162e-06 0.0001012 0.0001349 0.00% Castro::finalize_advance() 10 8.058e-05 9.958e-05 0.0001293 0.00% Castro::do_old_sources() 10 7.223e-05 9.745e-05 0.0001123 0.00% StateDataPhysBCFunct::() 41 8.174e-05 9.5e-05 0.0001045 0.00% Castro::Castro() 1 6.873e-05 8.776e-05 0.0001025 0.00% Castro::enforce_consistent_e() 1 7.958e-05 8.447e-05 9.141e-05 0.00% Castro::construct_old_source() 50 5.423e-05 6.931e-05 8.599e-05 0.00% Castro::do_new_sources() 10 5.749e-05 6.77e-05 8.406e-05 0.00% Amr::FinalizeInit() 1 3.871e-06 1.479e-05 8.243e-05 0.00% FabArray::ParallelCopy() 41 6.32e-05 7.298e-05 8.242e-05 0.00% FillPatchSingleLevel 41 5.671e-05 6.732e-05 7.696e-05 0.00% Castro::subcycle_advance_ctu() 10 4.261e-05 5.508e-05 6.608e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.059e-05 6.255e-05 0.00% FabArrayBase::getCPC() 41 4.307e-05 5.027e-05 6.045e-05 0.00% Castro::construct_old_gravity() 10 3.779e-05 4.541e-05 5.213e-05 0.00% Castro::apply_source_to_state() 20 3.785e-05 4.592e-05 5.154e-05 0.00% Castro::advance() 10 3.596e-05 4.392e-05 5.093e-05 0.00% Castro::construct_new_gravity() 10 3.416e-05 4.072e-05 4.531e-05 0.00% Castro::retry_advance_ctu() 10 6.399e-06 1.184e-05 4.352e-05 0.00% Amr::defBaseLevel() 1 2.988e-05 3.233e-05 3.623e-05 0.00% FabArrayBase::CPC::define() 2 2.059e-05 2.577e-05 3.564e-05 0.00% Castro::enforce_speed_limit() 62 2.58e-05 2.938e-05 3.116e-05 0.00% Castro::expand_state() 10 1.957e-05 2.2e-05 2.9e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.629e-05 2.067e-05 2.519e-05 0.00% Castro::post_timestep() 10 1.256e-05 1.632e-05 2.431e-05 0.00% Castro::check_for_nan() 20 1.903e-05 2.172e-05 2.369e-05 0.00% Gravity::set_mass_offset() 10 9.383e-06 1.283e-05 1.958e-05 0.00% Gravity::swapTimeLevels() 10 1.064e-05 1.436e-05 1.799e-05 0.00% Amr::initSubcycle() 1 8.966e-06 9.975e-06 1.484e-05 0.00% Castro::FluxRegCrseInit 10 5.314e-06 7.715e-06 1.359e-05 0.00% Castro::computeNewDt() 9 8.839e-06 9.614e-06 1.088e-05 0.00% Castro::create_source_corrector() 10 7.051e-06 8.246e-06 9.944e-06 0.00% Amr::initialInit() 1 1.761e-06 4.245e-06 8.126e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.62e-06 4.339e-06 5.787e-06 0.00% Castro::computeInitialDt() 2 3.807e-06 4.564e-06 5.445e-06 0.00% Castro::post_init() 1 3.408e-06 4.201e-06 4.743e-06 0.00% Amr::InitializeInit() 1 1.844e-06 2.372e-06 4.65e-06 0.00% Castro::post_regrid() 1 1.677e-06 3.134e-06 4.467e-06 0.00% Amr::init() 1 2.037e-06 2.461e-06 4.232e-06 0.00% Castro::FluxRegFineAdd() 10 1.889e-06 2.321e-06 2.706e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.024e-06 1.372e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.528 3.529 100.00% Amr::coarseTimeStep() 10 3.336 3.336 3.336 94.53% Amr::timeStep() 10 3.317 3.319 3.324 94.19% Castro::advance() 10 3.301 3.302 3.304 93.63% Castro::subcycle_advance_ctu() 10 3.212 3.22 3.228 91.47% Castro::do_advance_ctu() 10 3.212 3.22 3.228 91.47% Castro::construct_ctu_hydro_source() 10 2.452 2.456 2.459 69.69% Gravity::make_radial_gravity() 21 0.3265 0.334 0.343 9.72% AmrLevel::FillPatch() 41 0.1812 0.209 0.2296 6.50% Gravity::get_new_grav_vector() 11 0.2168 0.2187 0.2197 6.22% Castro::construct_old_gravity() 10 0.1929 0.1985 0.2062 5.84% Gravity::get_old_grav_vector() 10 0.1918 0.1978 0.2056 5.82% FillPatchIterator::Initialize 41 0.1533 0.1787 0.1965 5.57% Castro::construct_new_gravity() 10 0.1926 0.1942 0.1949 5.52% Castro::initialize_do_advance() 10 0.1619 0.1757 0.1872 5.31% Amr::init() 1 0.1787 0.1788 0.1788 5.07% check_for_negative_density() 10 0.02066 0.09999 0.1759 4.99% Amr::initialInit() 1 0.1621 0.1622 0.1623 4.60% FillPatchIterator::FillFromLevel0() 41 0.1131 0.1353 0.1497 4.24% FillPatchSingleLevel 41 0.113 0.1352 0.1496 4.24% Castro::expand_state() 10 0.1041 0.1217 0.1347 3.82% Amr::InitializeInit() 1 0.05869 0.0967 0.1342 3.80% Amr::defBaseLevel() 1 0.05869 0.09669 0.1342 3.80% Castro::clean_state() 62 0.1116 0.1161 0.1207 3.42% Castro::initData() 1 0.04263 0.0805 0.1181 3.35% FabArray::ParallelCopy() 41 0.07391 0.09859 0.1143 3.24% Castro::estTimeStep() 21 0.02636 0.06988 0.1109 3.14% Amr::FinalizeInit() 1 0.02786 0.06551 0.1034 2.93% Castro::do_old_sources() 10 0.09172 0.09513 0.09908 2.81% FabArray::setVal() 143 0.06737 0.07633 0.08794 2.49% amrex::Copy() 193 0.06576 0.07845 0.08764 2.48% Castro::initialize_advance() 10 0.07093 0.0784 0.08678 2.46% FabArray::ParallelCopy_finish() 41 0.03326 0.05896 0.08105 2.30% Castro::computeInitialDt() 2 0.002365 0.03988 0.07784 2.21% Castro::computeTemp() 63 0.06487 0.06865 0.072 2.04% Castro::do_new_sources() 10 0.05927 0.0633 0.07177 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04685 0.04905 0.05215 1.48% Castro::reset_internal_energy(Fab) 1008 0.04658 0.04876 0.05186 1.47% Castro::normalize_species() 62 0.04091 0.04208 0.04343 1.23% FabArray::ParallelCopy_nowait() 41 0.03318 0.03956 0.04217 1.20% StateDataPhysBCFunct::() 41 0.03437 0.0365 0.03934 1.11% StateData::FillBoundary(geom) 41 0.03427 0.0364 0.03925 1.11% Castro::construct_new_source() 50 0.02692 0.02959 0.03161 0.90% Gravity::interpolate_monopole_grav() 21 0.02818 0.0284 0.02897 0.82% Amr::writePlotFile() 2 0.02606 0.0262 0.02634 0.75% Castro::finalize_do_advance() 10 0.01294 0.02179 0.02565 0.73% Castro::post_init() 1 0.02525 0.02539 0.02551 0.72% Castro::construct_new_gravity_source() 10 0.02126 0.02317 0.0245 0.69% Castro::post_timestep() 10 0.01522 0.01687 0.02058 0.58% VisMF::Write(FabArray) 2 0.01233 0.01298 0.01629 0.46% Castro::apply_source_to_state() 20 0.01049 0.01293 0.01507 0.43% FabArray::Saxpy() 20 0.01045 0.01289 0.01502 0.43% FabArray::setDomainBndry() 41 0.008697 0.01131 0.01262 0.36% Castro::check_for_nan() 20 0.009827 0.01048 0.01124 0.32% MultiFab::contains_nan() 20 0.009803 0.01045 0.01122 0.32% Castro::Castro() 1 0.01082 0.0109 0.01105 0.31% Castro::construct_old_source() 50 0.006623 0.009302 0.01016 0.29% Castro::construct_old_gravity_source() 10 0.006555 0.009233 0.01009 0.29% Castro::computeNewDt() 9 0.00932 0.009334 0.009344 0.26% Castro::enforce_min_density() 62 0.005799 0.006088 0.006621 0.19% Castro::initMFs() 1 0.006175 0.006204 0.00624 0.18% Castro::finalize_advance() 10 0.003009 0.003651 0.005347 0.15% AmrLevel::AmrLevel(dm) 1 0.005136 0.005161 0.005184 0.15% StateData::define() 4 0.00512 0.005141 0.005161 0.15% Castro::swap_state_time_levels() 10 0.002844 0.004162 0.004376 0.12% Castro::post_regrid() 1 0.001538 0.001582 0.001656 0.05% Castro::buildMetrics() 1 0.001571 0.001596 0.001635 0.05% Amr::InitAmr() 1 0.0002632 0.0002963 0.0003937 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.091e-05 0.0001066 0.0001417 0.00% DistributionMapping::LeastUsedCPUs() 1 6.162e-06 0.0001012 0.0001349 0.00% FabArrayBase::getCPC() 41 6.811e-05 7.604e-05 9.609e-05 0.00% Castro::enforce_consistent_e() 1 7.958e-05 8.447e-05 9.141e-05 0.00% Amr::writeSmallPlotFile() 1 3.054e-05 4.059e-05 6.255e-05 0.00% Castro::retry_advance_ctu() 10 6.399e-06 1.184e-05 4.352e-05 0.00% FabArrayBase::CPC::define() 2 2.059e-05 2.577e-05 3.564e-05 0.00% Castro::enforce_speed_limit() 62 2.58e-05 2.938e-05 3.116e-05 0.00% Gravity::set_mass_offset() 10 9.383e-06 1.283e-05 1.958e-05 0.00% Gravity::swapTimeLevels() 10 1.064e-05 1.436e-05 1.799e-05 0.00% Amr::initSubcycle() 1 8.966e-06 9.975e-06 1.484e-05 0.00% Castro::FluxRegCrseInit 10 5.314e-06 7.715e-06 1.359e-05 0.00% Castro::create_source_corrector() 10 7.051e-06 8.246e-06 9.944e-06 0.00% Castro::FluxRegFineAdd() 10 1.889e-06 2.321e-06 2.706e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.024e-06 1.372e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 58 B 77 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-14-g7ee29121ed70) finalized