Initializing AMReX (23.10-19-g54c337f36164)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-19-g54c337f36164) initialized Starting run at 12:26:01 UTC on 2023-10-21. Successfully read inputs file ... Castro git describe: 23.10-46-g31a7d516b AMReX git describe: 23.10-19-g54c337f36 Microphysics git describe: 23.10-13-gb28cd4e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013832266 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.344284477 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336868875 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324172634 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324447554 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.3227871 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352994577 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313635921 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307044377 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307033347 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306070967 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010368332 seconds Ending run at 12:26:04 UTC on 2023-10-21. Run time = 3.456468607 Run time without initialization = 3.254806595 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.456 ... 3.456 ... 3.457 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2884 2.3290 2.3955 69.30% Gravity::make_radial_gravity() 21 0.2833 0.2919 0.3045 8.81% Castro::initData() 1 0.04893 0.08963 0.1402 4.06% check_for_negative_density() 10 0.02408 0.09539 0.1369 3.96% Castro::estTimeStep() 21 0.02162 0.08228 0.1263 3.66% FabArray::ParallelCopy_finish() 41 0.03217 0.05046 0.1032 2.98% amrex::Copy() 193 0.04997 0.07025 0.08273 2.39% FabArray::setVal() 143 0.03316 0.05849 0.06806 1.97% Castro::reset_internal_energy(Fab) 1008 0.04599 0.04714 0.04914 1.42% Castro::normalize_species() 62 0.04059 0.04147 0.0423 1.22% FabArray::ParallelCopy_nowait() 41 0.03059 0.03788 0.04101 1.19% FillPatchIterator::Initialize 41 0.02606 0.03058 0.03378 0.98% StateData::FillBoundary(geom) 41 0.02937 0.03054 0.03272 0.95% Gravity::interpolate_monopole_grav() 21 0.02764 0.02913 0.02988 0.86% Castro::construct_new_gravity_source() 10 0.01802 0.02244 0.02606 0.75% Castro::computeTemp() 63 0.0188 0.01953 0.02051 0.59% Castro::initialize_do_advance() 10 0.01046 0.01478 0.01695 0.49% VisMF::Write(FabArray) 2 0.01292 0.0134 0.01565 0.45% Castro::initialize_advance() 10 0.003913 0.009653 0.01354 0.39% FabArray::Saxpy() 20 0.007227 0.01119 0.01281 0.37% MultiFab::contains_nan() 20 0.0094 0.01033 0.01156 0.33% FabArray::setDomainBndry() 41 0.006082 0.008882 0.0111 0.32% Amr::writePlotFile() 2 0.006128 0.00876 0.01017 0.29% Castro::construct_old_gravity_source() 10 0.004833 0.008438 0.009589 0.28% Castro::initMFs() 1 0.006078 0.0067 0.007293 0.21% Castro::enforce_min_density() 62 0.005431 0.005903 0.00636 0.18% Castro::construct_new_source() 50 0.004984 0.005742 0.006155 0.18% StateData::define() 4 0.005071 0.005522 0.005873 0.17% main() 1 0.00353 0.004055 0.004403 0.13% Castro::swap_state_time_levels() 10 0.003 0.003821 0.004228 0.12% Gravity::get_new_grav_vector() 11 0.002634 0.003243 0.003737 0.11% Amr::coarseTimeStep() 10 0.0009368 0.001704 0.003115 0.09% Gravity::get_old_grav_vector() 10 0.001521 0.001913 0.002413 0.07% Castro::buildMetrics() 1 0.001424 0.001566 0.001667 0.05% Castro::finalize_do_advance() 10 0.0005857 0.000939 0.001214 0.04% AmrLevel::FillPatch() 41 0.0007676 0.0008733 0.001029 0.03% Amr::timeStep() 10 0.0001754 0.0002341 0.0004108 0.01% Amr::InitAmr() 1 0.0002595 0.0002984 0.0003958 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002666 0.000287 0.0003149 0.01% Castro::clean_state() 62 0.0001438 0.0001572 0.000171 0.00% Castro::do_advance_ctu() 10 0.0001289 0.000145 0.0001635 0.00% DistributionMapping::LeastUsedCPUs() 1 6.884e-06 0.0001113 0.0001621 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001073 0.0001253 0.0001598 0.00% StateDataPhysBCFunct::() 41 8.762e-05 0.0001054 0.0001346 0.00% Castro::Castro() 1 5.283e-05 7.041e-05 0.0001345 0.00% Castro::finalize_advance() 10 8.586e-05 9.668e-05 0.0001133 0.00% Castro::enforce_consistent_e() 1 8.471e-05 9.258e-05 0.0001001 0.00% Castro::do_old_sources() 10 7.639e-05 8.472e-05 9.273e-05 0.00% FabArrayBase::getCPC() 41 4.837e-05 6.502e-05 9.131e-05 0.00% FabArray::ParallelCopy() 41 6.883e-05 7.948e-05 8.908e-05 0.00% FillPatchSingleLevel 41 6.672e-05 7.427e-05 8.378e-05 0.00% Castro::do_new_sources() 10 5.338e-05 6.336e-05 7.583e-05 0.00% Castro::construct_old_source() 50 5.508e-05 6.437e-05 7.269e-05 0.00% Amr::writeSmallPlotFile() 1 2.966e-05 4.885e-05 6.458e-05 0.00% Amr::FinalizeInit() 1 3.523e-06 1.147e-05 6.356e-05 0.00% Castro::subcycle_advance_ctu() 10 3.957e-05 4.716e-05 5.56e-05 0.00% Castro::apply_source_to_state() 20 3.878e-05 4.656e-05 5.342e-05 0.00% Castro::expand_state() 10 2.125e-05 2.857e-05 4.906e-05 0.00% Castro::advance() 10 3.688e-05 4.402e-05 4.905e-05 0.00% Castro::enforce_speed_limit() 62 2.586e-05 3.435e-05 4.768e-05 0.00% Castro::construct_new_gravity() 10 3.055e-05 3.622e-05 4.765e-05 0.00% Castro::construct_old_gravity() 10 3.286e-05 3.714e-05 4.241e-05 0.00% Amr::defBaseLevel() 1 3.197e-05 3.587e-05 4.111e-05 0.00% FabArrayBase::CPC::define() 2 2.206e-05 2.607e-05 3e-05 0.00% Castro::check_for_nan() 20 2.091e-05 2.357e-05 2.625e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.509e-05 1.979e-05 2.425e-05 0.00% Castro::post_timestep() 10 1.318e-05 1.5e-05 1.941e-05 0.00% Castro::post_init() 1 1.321e-05 1.521e-05 1.799e-05 0.00% Gravity::set_mass_offset() 10 8.322e-06 1.121e-05 1.356e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.123e-05 1.225e-05 0.00% Gravity::swapTimeLevels() 10 6.029e-06 8.832e-06 1.109e-05 0.00% Castro::create_source_corrector() 10 6.804e-06 8.603e-06 1.066e-05 0.00% Castro::computeNewDt() 9 7.131e-06 7.956e-06 9.561e-06 0.00% Castro::retry_advance_ctu() 10 6.161e-06 7.065e-06 9.257e-06 0.00% Castro::FluxRegCrseInit 10 6.852e-06 7.69e-06 8.46e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.84e-06 4.763e-06 6.129e-06 0.00% Amr::InitializeInit() 1 1.787e-06 2.433e-06 4.607e-06 0.00% Castro::computeInitialDt() 2 3.058e-06 3.538e-06 4.193e-06 0.00% Castro::post_regrid() 1 1.729e-06 2.559e-06 3.281e-06 0.00% Castro::FluxRegFineAdd() 10 1.926e-06 2.331e-06 2.615e-06 0.00% Amr::init() 1 1.61e-06 1.996e-06 2.456e-06 0.00% Amr::initialInit() 1 1.311e-06 1.683e-06 2.451e-06 0.00% DistributionMapping::Distribute() 1 8.66e-07 1.023e-06 1.199e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.456 3.456 3.457 100.00% Amr::coarseTimeStep() 10 3.24 3.24 3.24 93.74% Amr::timeStep() 10 3.227 3.228 3.229 93.42% Castro::advance() 10 3.211 3.212 3.213 92.94% Castro::subcycle_advance_ctu() 10 3.139 3.146 3.167 91.63% Castro::do_advance_ctu() 10 3.138 3.145 3.167 91.62% Castro::construct_ctu_hydro_source() 10 2.441 2.445 2.449 70.84% Gravity::make_radial_gravity() 21 0.2986 0.307 0.3163 9.15% AmrLevel::FillPatch() 41 0.174 0.1876 0.222 6.42% Gravity::get_new_grav_vector() 11 0.2031 0.204 0.2048 5.92% Amr::init() 1 0.2011 0.2012 0.2012 5.82% FillPatchIterator::Initialize 41 0.144 0.1588 0.1993 5.77% Castro::construct_old_gravity() 10 0.1762 0.1821 0.1905 5.51% Gravity::get_old_grav_vector() 10 0.1756 0.1816 0.1899 5.49% Amr::initialInit() 1 0.1868 0.187 0.1873 5.42% Castro::construct_new_gravity() 10 0.1809 0.1812 0.1815 5.25% Castro::initialize_do_advance() 10 0.1489 0.1561 0.1706 4.93% FillPatchIterator::FillFromLevel0() 41 0.1024 0.1194 0.165 4.77% FillPatchSingleLevel 41 0.1023 0.1192 0.1649 4.77% Amr::InitializeInit() 1 0.06735 0.1093 0.1607 4.65% Amr::defBaseLevel() 1 0.06735 0.1093 0.1607 4.65% Castro::initData() 1 0.05287 0.09347 0.144 4.16% check_for_negative_density() 10 0.02408 0.09539 0.1369 3.96% FabArray::ParallelCopy() 41 0.07147 0.08851 0.1339 3.88% Castro::estTimeStep() 21 0.02162 0.08228 0.1263 3.66% Castro::expand_state() 10 0.09714 0.1053 0.1256 3.63% Amr::FinalizeInit() 1 0.02623 0.0777 0.1197 3.46% Castro::clean_state() 62 0.1118 0.1136 0.1169 3.38% FabArray::ParallelCopy_finish() 41 0.03217 0.05046 0.1032 2.98% Castro::computeInitialDt() 2 0.002155 0.0535 0.09536 2.76% Castro::do_old_sources() 10 0.08568 0.08874 0.09144 2.65% amrex::Copy() 193 0.04997 0.07025 0.08273 2.39% Castro::initialize_advance() 10 0.04177 0.06361 0.07073 2.05% Castro::computeTemp() 63 0.0657 0.06696 0.06992 2.02% FabArray::setVal() 143 0.03316 0.05849 0.06806 1.97% Castro::do_new_sources() 10 0.04719 0.0586 0.06705 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04631 0.04743 0.04942 1.43% Castro::reset_internal_energy(Fab) 1008 0.04599 0.04714 0.04914 1.42% Castro::normalize_species() 62 0.04059 0.04147 0.0423 1.22% FabArray::ParallelCopy_nowait() 41 0.03069 0.03797 0.04108 1.19% StateDataPhysBCFunct::() 41 0.02947 0.03065 0.03281 0.95% StateData::FillBoundary(geom) 41 0.02937 0.03054 0.03272 0.95% Castro::construct_new_source() 50 0.02301 0.02818 0.03217 0.93% Castro::finalize_do_advance() 10 0.01132 0.02061 0.03201 0.93% Gravity::interpolate_monopole_grav() 21 0.02764 0.02913 0.02988 0.86% Castro::construct_new_gravity_source() 10 0.01802 0.02244 0.02606 0.75% Amr::writePlotFile() 2 0.02441 0.02463 0.02487 0.72% Castro::post_init() 1 0.02347 0.02376 0.02396 0.69% Castro::post_timestep() 10 0.0153 0.0158 0.01627 0.47% VisMF::Write(FabArray) 2 0.01292 0.0134 0.01565 0.45% Castro::apply_source_to_state() 20 0.007275 0.01124 0.01285 0.37% FabArray::Saxpy() 20 0.007227 0.01119 0.01281 0.37% Castro::check_for_nan() 20 0.009426 0.01035 0.01158 0.34% MultiFab::contains_nan() 20 0.0094 0.01033 0.01156 0.33% Castro::Castro() 1 0.009308 0.01015 0.01116 0.32% FabArray::setDomainBndry() 41 0.006082 0.008882 0.0111 0.32% Castro::construct_old_source() 50 0.004891 0.008503 0.009649 0.28% Castro::construct_old_gravity_source() 10 0.004833 0.008438 0.009589 0.28% Castro::computeNewDt() 9 0.009114 0.009123 0.009131 0.26% Castro::initMFs() 1 0.006078 0.0067 0.007293 0.21% Castro::enforce_min_density() 62 0.005431 0.005903 0.00636 0.18% AmrLevel::AmrLevel(dm) 1 0.005087 0.005542 0.005896 0.17% StateData::define() 4 0.005071 0.005522 0.005873 0.17% Castro::swap_state_time_levels() 10 0.003 0.003821 0.004228 0.12% Castro::finalize_advance() 10 0.002066 0.002959 0.003223 0.09% Castro::buildMetrics() 1 0.001538 0.001699 0.001816 0.05% Castro::post_regrid() 1 0.001478 0.001556 0.001636 0.05% Amr::InitAmr() 1 0.0002702 0.0003097 0.0004059 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.176e-05 0.0001171 0.000169 0.00% DistributionMapping::LeastUsedCPUs() 1 6.884e-06 0.0001113 0.0001621 0.00% FabArrayBase::getCPC() 41 7.367e-05 9.108e-05 0.0001134 0.00% Castro::enforce_consistent_e() 1 8.471e-05 9.258e-05 0.0001001 0.00% Amr::writeSmallPlotFile() 1 2.966e-05 4.885e-05 6.458e-05 0.00% Castro::enforce_speed_limit() 62 2.586e-05 3.435e-05 4.768e-05 0.00% FabArrayBase::CPC::define() 2 2.206e-05 2.607e-05 3e-05 0.00% Gravity::set_mass_offset() 10 8.322e-06 1.121e-05 1.356e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.123e-05 1.225e-05 0.00% Gravity::swapTimeLevels() 10 6.029e-06 8.832e-06 1.109e-05 0.00% Castro::create_source_corrector() 10 6.804e-06 8.603e-06 1.066e-05 0.00% Castro::retry_advance_ctu() 10 6.161e-06 7.065e-06 9.257e-06 0.00% Castro::FluxRegCrseInit 10 6.852e-06 7.69e-06 8.46e-06 0.00% Castro::FluxRegFineAdd() 10 1.926e-06 2.331e-06 2.615e-06 0.00% DistributionMapping::Distribute() 1 8.66e-07 1.023e-06 1.199e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-19-g54c337f36164) finalized