Initializing AMReX (23.10-21-g152fdac6aa4c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-21-g152fdac6aa4c) initialized Starting run at 19:40:48 UTC on 2023-10-23. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-21-g152fdac6a Microphysics git describe: 23.10-17-g7974a0d1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01717027 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370129104 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.386761203 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.322444785 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.322148133 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.346046174 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.326997651 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.307953552 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307892105 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307594159 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308591745 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00972261 seconds Ending run at 19:40:52 UTC on 2023-10-23. Run time = 3.57316776 Run time without initialization = 3.321607927 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.572 ... 3.573 ... 3.573 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2878 2.3352 2.3717 66.37% Gravity::make_radial_gravity() 21 0.3127 0.3222 0.3333 9.33% Castro::initData() 1 0.0741 0.1058 0.1661 4.65% Castro::estTimeStep() 21 0.04356 0.1014 0.1435 4.02% check_for_negative_density() 10 0.05359 0.09191 0.1411 3.95% FabArray::ParallelCopy_finish() 41 0.03688 0.0575 0.08713 2.44% amrex::Copy() 193 0.06298 0.07454 0.08165 2.29% FabArray::setVal() 143 0.06164 0.06741 0.07704 2.16% Castro::reset_internal_energy(Fab) 1008 0.04737 0.04893 0.05112 1.43% Castro::normalize_species() 62 0.0408 0.04324 0.04547 1.27% FabArray::ParallelCopy_nowait() 41 0.0361 0.03995 0.04169 1.17% FillPatchIterator::Initialize 41 0.02785 0.03207 0.03466 0.97% StateData::FillBoundary(geom) 41 0.03033 0.03207 0.03348 0.94% Castro::construct_new_gravity_source() 10 0.02249 0.02547 0.032 0.90% Gravity::interpolate_monopole_grav() 21 0.02822 0.02978 0.03162 0.88% Castro::initialize_do_advance() 10 0.01217 0.01788 0.02197 0.61% Castro::computeTemp() 63 0.0194 0.02038 0.02144 0.60% VisMF::Write(FabArray) 2 0.01134 0.01282 0.01613 0.45% Amr::writePlotFile() 2 0.008202 0.01208 0.01473 0.41% Castro::initialize_advance() 10 0.004442 0.0103 0.01384 0.39% FabArray::Saxpy() 20 0.01103 0.01241 0.01335 0.37% MultiFab::contains_nan() 20 0.009592 0.01048 0.01108 0.31% Castro::construct_old_gravity_source() 10 0.007635 0.009464 0.01006 0.28% FabArray::setDomainBndry() 41 0.006683 0.008766 0.009987 0.28% Castro::initMFs() 1 0.00606 0.007775 0.009472 0.27% StateData::define() 4 0.005067 0.006462 0.007696 0.22% Castro::enforce_min_density() 62 0.005796 0.006203 0.006798 0.19% Castro::construct_new_source() 50 0.005962 0.006222 0.00662 0.19% Castro::swap_state_time_levels() 10 0.00297 0.004645 0.006085 0.17% Gravity::get_new_grav_vector() 11 0.002931 0.003873 0.005776 0.16% main() 1 0.003054 0.003903 0.004554 0.13% Amr::coarseTimeStep() 10 0.001427 0.002779 0.004009 0.11% Castro::buildMetrics() 1 0.001436 0.00182 0.002219 0.06% Gravity::get_old_grav_vector() 10 0.001646 0.001903 0.002129 0.06% Castro::finalize_do_advance() 10 0.0005241 0.001138 0.001351 0.04% AmrLevel::FillPatch() 41 0.0006862 0.0007824 0.0009406 0.03% Amr::InitAmr() 1 0.0002731 0.0004354 0.0007117 0.02% DistributionMapping::LeastUsedCPUs() 1 7.33e-06 0.0003187 0.000497 0.01% Amr::timeStep() 10 0.0001552 0.000223 0.0004482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002958 0.0003246 0.01% Castro::clean_state() 62 0.0001471 0.0001614 0.000178 0.00% Castro::do_advance_ctu() 10 0.0001258 0.0001463 0.0001678 0.00% Castro::enforce_consistent_e() 1 8.371e-05 0.0001134 0.0001396 0.00% StateDataPhysBCFunct::() 41 9.577e-05 0.0001137 0.000138 0.00% FillPatchIterator::FillFromLevel0() 41 9.61e-05 0.0001192 0.0001354 0.00% Castro::do_old_sources() 10 8e-05 9.237e-05 0.0001188 0.00% Castro::finalize_advance() 10 8.359e-05 9.46e-05 0.0001068 0.00% FabArray::ParallelCopy() 41 7.192e-05 8.121e-05 9.088e-05 0.00% Castro::Castro() 1 5.079e-05 6.903e-05 8.378e-05 0.00% FillPatchSingleLevel 41 6.527e-05 7.178e-05 7.875e-05 0.00% Castro::construct_old_source() 50 5.11e-05 6.659e-05 7.73e-05 0.00% FabArrayBase::getCPC() 41 5.462e-05 6.24e-05 7.444e-05 0.00% Castro::do_new_sources() 10 5.739e-05 6.684e-05 7.441e-05 0.00% Amr::FinalizeInit() 1 3.537e-06 1.332e-05 7.218e-05 0.00% Amr::writeSmallPlotFile() 1 3.112e-05 4.92e-05 6.673e-05 0.00% Castro::apply_source_to_state() 20 3.847e-05 4.854e-05 6.272e-05 0.00% Castro::subcycle_advance_ctu() 10 3.815e-05 4.555e-05 5.205e-05 0.00% Castro::advance() 10 3.593e-05 4.527e-05 5.205e-05 0.00% Castro::construct_new_gravity() 10 3.072e-05 3.364e-05 4.332e-05 0.00% Castro::construct_old_gravity() 10 3.364e-05 3.694e-05 4.019e-05 0.00% Amr::defBaseLevel() 1 2.658e-05 3.103e-05 3.686e-05 0.00% FabArrayBase::CPC::define() 2 2.171e-05 2.874e-05 3.527e-05 0.00% Castro::enforce_speed_limit() 62 2.683e-05 3.015e-05 3.515e-05 0.00% Castro::expand_state() 10 1.96e-05 2.565e-05 3.036e-05 0.00% Castro::post_timestep() 10 1.284e-05 1.982e-05 2.737e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.289e-05 2.039e-05 2.619e-05 0.00% Castro::check_for_nan() 20 2.289e-05 2.396e-05 2.518e-05 0.00% Castro::post_init() 1 1.326e-05 1.763e-05 2.061e-05 0.00% Amr::initSubcycle() 1 9.999e-06 1.481e-05 1.926e-05 0.00% Gravity::swapTimeLevels() 10 6.004e-06 1.017e-05 1.322e-05 0.00% Gravity::set_mass_offset() 10 8.659e-06 1.079e-05 1.251e-05 0.00% Castro::computeNewDt() 9 7.267e-06 8.938e-06 1.12e-05 0.00% Castro::create_source_corrector() 10 7.158e-06 8.522e-06 1.021e-05 0.00% Castro::FluxRegCrseInit 10 6.406e-06 8.212e-06 9.426e-06 0.00% Castro::retry_advance_ctu() 10 6.08e-06 6.755e-06 7.824e-06 0.00% Amr::init() 1 1.691e-06 2.99e-06 7.717e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.01e-06 5.198e-06 6.722e-06 0.00% Amr::InitializeInit() 1 1.968e-06 2.659e-06 5.722e-06 0.00% Castro::computeInitialDt() 2 3.192e-06 3.696e-06 4.369e-06 0.00% Castro::post_regrid() 1 2.284e-06 3.157e-06 4.107e-06 0.00% Castro::FluxRegFineAdd() 10 1.941e-06 2.411e-06 2.939e-06 0.00% Amr::initialInit() 1 1.342e-06 1.824e-06 2.49e-06 0.00% DistributionMapping::Distribute() 1 9.32e-07 1.277e-06 1.784e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.572 3.573 3.573 100.00% Amr::coarseTimeStep() 10 3.307 3.307 3.307 92.56% Amr::timeStep() 10 3.292 3.293 3.295 92.20% Castro::advance() 10 3.276 3.277 3.278 91.73% Castro::subcycle_advance_ctu() 10 3.193 3.203 3.213 89.91% Castro::do_advance_ctu() 10 3.192 3.203 3.213 89.91% Castro::construct_ctu_hydro_source() 10 2.446 2.448 2.45 68.57% Gravity::make_radial_gravity() 21 0.3282 0.3377 0.3458 9.68% Amr::init() 1 0.2506 0.2509 0.2511 7.03% Amr::initialInit() 1 0.2331 0.2335 0.2339 6.55% Gravity::get_new_grav_vector() 11 0.2237 0.2263 0.2277 6.37% AmrLevel::FillPatch() 41 0.1779 0.2005 0.2138 5.98% Castro::construct_old_gravity() 10 0.1856 0.1952 0.2012 5.63% Gravity::get_old_grav_vector() 10 0.185 0.1946 0.2006 5.61% Amr::InitializeInit() 1 0.09308 0.1288 0.1929 5.40% Amr::defBaseLevel() 1 0.09308 0.1288 0.1929 5.40% Castro::construct_new_gravity() 10 0.1894 0.1909 0.1918 5.37% FillPatchIterator::Initialize 41 0.1483 0.1708 0.1896 5.31% Castro::initialize_do_advance() 10 0.1597 0.1707 0.1789 5.01% Castro::initData() 1 0.07771 0.1103 0.1711 4.79% FillPatchIterator::FillFromLevel0() 41 0.1092 0.13 0.1541 4.31% FillPatchSingleLevel 41 0.1091 0.1299 0.154 4.31% Castro::estTimeStep() 21 0.04356 0.1014 0.1435 4.02% check_for_negative_density() 10 0.05359 0.09191 0.1411 3.95% Amr::FinalizeInit() 1 0.04074 0.1046 0.1404 3.93% Castro::expand_state() 10 0.101 0.1154 0.1254 3.51% Castro::clean_state() 62 0.1135 0.118 0.124 3.47% FabArray::ParallelCopy() 41 0.07658 0.09762 0.1234 3.45% Castro::computeInitialDt() 2 0.003445 0.06776 0.1037 2.90% Castro::do_old_sources() 10 0.08731 0.09201 0.0963 2.69% FabArray::ParallelCopy_finish() 41 0.03688 0.0575 0.08713 2.44% amrex::Copy() 193 0.06298 0.07454 0.08165 2.29% Castro::initialize_advance() 10 0.06008 0.07076 0.08099 2.27% Castro::do_new_sources() 10 0.05874 0.06556 0.07775 2.18% FabArray::setVal() 143 0.06164 0.06741 0.07704 2.16% Castro::computeTemp() 63 0.06705 0.06961 0.07288 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04765 0.04922 0.05144 1.44% Castro::reset_internal_energy(Fab) 1008 0.04737 0.04893 0.05112 1.43% Castro::normalize_species() 62 0.0408 0.04324 0.04547 1.27% FabArray::ParallelCopy_nowait() 41 0.03619 0.04004 0.04179 1.17% Castro::construct_new_source() 50 0.02853 0.03169 0.03862 1.08% Castro::post_init() 1 0.03593 0.03644 0.03687 1.03% StateDataPhysBCFunct::() 41 0.03044 0.03218 0.03357 0.94% StateData::FillBoundary(geom) 41 0.03033 0.03207 0.03348 0.94% Castro::finalize_do_advance() 10 0.01229 0.02507 0.03204 0.90% Castro::construct_new_gravity_source() 10 0.02249 0.02547 0.032 0.90% Gravity::interpolate_monopole_grav() 21 0.02822 0.02978 0.03162 0.88% Amr::writePlotFile() 2 0.02674 0.02729 0.02787 0.78% Castro::post_timestep() 10 0.01532 0.01591 0.01695 0.47% VisMF::Write(FabArray) 2 0.01134 0.01282 0.01613 0.45% Castro::Castro() 1 0.009386 0.01171 0.01398 0.39% Castro::apply_source_to_state() 20 0.01107 0.01246 0.01339 0.37% FabArray::Saxpy() 20 0.01103 0.01241 0.01335 0.37% Castro::check_for_nan() 20 0.009616 0.01051 0.01111 0.31% MultiFab::contains_nan() 20 0.009592 0.01048 0.01108 0.31% Castro::construct_old_source() 50 0.007686 0.009531 0.01013 0.28% Castro::construct_old_gravity_source() 10 0.007635 0.009464 0.01006 0.28% FabArray::setDomainBndry() 41 0.006683 0.008766 0.009987 0.28% Castro::computeNewDt() 9 0.009698 0.009703 0.00971 0.27% Castro::initMFs() 1 0.00606 0.007775 0.009472 0.27% AmrLevel::AmrLevel(dm) 1 0.005081 0.006482 0.007718 0.22% StateData::define() 4 0.005067 0.006462 0.007696 0.22% Castro::enforce_min_density() 62 0.005796 0.006203 0.006798 0.19% Castro::swap_state_time_levels() 10 0.00297 0.004645 0.006085 0.17% Castro::finalize_advance() 10 0.002949 0.003487 0.004094 0.11% Castro::post_regrid() 1 0.001562 0.002212 0.00284 0.08% Castro::buildMetrics() 1 0.001551 0.001981 0.00243 0.07% Amr::InitAmr() 1 0.0002839 0.0004502 0.0007309 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.262e-05 0.0003252 0.0005051 0.01% DistributionMapping::LeastUsedCPUs() 1 7.33e-06 0.0003187 0.000497 0.01% Castro::enforce_consistent_e() 1 8.371e-05 0.0001134 0.0001396 0.00% FabArrayBase::getCPC() 41 8.316e-05 9.114e-05 0.0001004 0.00% Amr::writeSmallPlotFile() 1 3.112e-05 4.92e-05 6.673e-05 0.00% FabArrayBase::CPC::define() 2 2.171e-05 2.874e-05 3.527e-05 0.00% Castro::enforce_speed_limit() 62 2.683e-05 3.015e-05 3.515e-05 0.00% Amr::initSubcycle() 1 9.999e-06 1.481e-05 1.926e-05 0.00% Gravity::swapTimeLevels() 10 6.004e-06 1.017e-05 1.322e-05 0.00% Gravity::set_mass_offset() 10 8.659e-06 1.079e-05 1.251e-05 0.00% Castro::create_source_corrector() 10 7.158e-06 8.522e-06 1.021e-05 0.00% Castro::FluxRegCrseInit 10 6.406e-06 8.212e-06 9.426e-06 0.00% Castro::retry_advance_ctu() 10 6.08e-06 6.755e-06 7.824e-06 0.00% Castro::FluxRegFineAdd() 10 1.941e-06 2.411e-06 2.939e-06 0.00% DistributionMapping::Distribute() 1 9.32e-07 1.277e-06 1.784e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-21-g152fdac6aa4c) finalized