Initializing AMReX (23.10-19-g54c337f36164)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-19-g54c337f36164) initialized Starting run at 05:20:07 UTC on 2023-10-23. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-19-g54c337f36 Microphysics git describe: 23.10-15-g8ec4f083 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014614569 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368984627 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344891658 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33152099 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334480473 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347805866 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343723149 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315884386 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312302093 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311161703 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311820909 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009823443 seconds Ending run at 05:20:11 UTC on 2023-10-23. Run time = 3.569006397 Run time without initialization = 3.337550167 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.569 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2957 2.3646 2.4374 68.29% Gravity::make_radial_gravity() 21 0.2921 0.3013 0.3134 8.78% Castro::estTimeStep() 21 0.04211 0.1011 0.1623 4.55% Castro::initData() 1 0.04884 0.09998 0.1619 4.54% check_for_negative_density() 10 0.01804 0.08947 0.1594 4.47% FabArray::ParallelCopy_finish() 41 0.03573 0.05631 0.09289 2.60% amrex::Copy() 193 0.06637 0.07654 0.08498 2.38% FabArray::setVal() 143 0.06157 0.07022 0.08289 2.32% Castro::reset_internal_energy(Fab) 1008 0.04623 0.04797 0.04941 1.38% Castro::normalize_species() 62 0.04176 0.04276 0.044 1.23% FabArray::ParallelCopy_nowait() 41 0.03441 0.04013 0.04174 1.17% FillPatchIterator::Initialize 41 0.02696 0.03138 0.03572 1.00% StateData::FillBoundary(geom) 41 0.02854 0.03116 0.03372 0.94% Gravity::interpolate_monopole_grav() 21 0.02794 0.02982 0.03265 0.91% Castro::construct_new_gravity_source() 10 0.02262 0.02575 0.03049 0.85% Castro::initialize_do_advance() 10 0.01125 0.01713 0.02131 0.60% Castro::computeTemp() 63 0.01876 0.01983 0.02086 0.58% VisMF::Write(FabArray) 2 0.01242 0.01303 0.01555 0.44% Castro::initialize_advance() 10 0.004125 0.01039 0.01408 0.39% FabArray::Saxpy() 20 0.01098 0.013 0.01378 0.39% MultiFab::contains_nan() 20 0.009452 0.01055 0.01187 0.33% FabArray::setDomainBndry() 41 0.007935 0.009535 0.0111 0.31% Castro::construct_old_gravity_source() 10 0.007115 0.009515 0.01033 0.29% Amr::writePlotFile() 2 0.006385 0.00905 0.009935 0.28% Castro::initMFs() 1 0.006081 0.007441 0.009611 0.27% StateData::define() 4 0.005163 0.006219 0.00795 0.22% Castro::construct_new_source() 50 0.005648 0.006159 0.006525 0.18% Castro::enforce_min_density() 62 0.005641 0.006011 0.006303 0.18% Castro::swap_state_time_levels() 10 0.003047 0.004069 0.004849 0.14% main() 1 0.003788 0.004243 0.004552 0.13% Gravity::get_new_grav_vector() 11 0.002806 0.003425 0.003852 0.11% Amr::coarseTimeStep() 10 0.00158 0.002241 0.002624 0.07% Gravity::get_old_grav_vector() 10 0.001454 0.001973 0.002388 0.07% Castro::buildMetrics() 1 0.001461 0.00178 0.002266 0.06% Castro::finalize_do_advance() 10 0.000434 0.001178 0.001533 0.04% AmrLevel::FillPatch() 41 0.0007185 0.0008525 0.001013 0.03% Amr::InitAmr() 1 0.0002613 0.0003512 0.0004827 0.01% Amr::timeStep() 10 0.0001379 0.0002 0.0004655 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002654 0.0002821 0.0003023 0.01% DistributionMapping::LeastUsedCPUs() 1 7.369e-06 0.0001594 0.0002666 0.01% Castro::do_advance_ctu() 10 0.000117 0.0001439 0.0001758 0.00% Castro::clean_state() 62 0.0001353 0.0001497 0.0001583 0.00% Castro::enforce_consistent_e() 1 7.985e-05 0.0001003 0.0001387 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001026 0.0001118 0.0001272 0.00% StateDataPhysBCFunct::() 41 8.638e-05 0.0001022 0.0001268 0.00% Castro::finalize_advance() 10 7.321e-05 9.375e-05 0.0001148 0.00% Castro::do_old_sources() 10 6.593e-05 8.375e-05 9.498e-05 0.00% FabArray::ParallelCopy() 41 6.419e-05 7.533e-05 9.112e-05 0.00% Castro::construct_old_source() 50 4.617e-05 6.689e-05 8.151e-05 0.00% FillPatchSingleLevel 41 6.105e-05 6.914e-05 8.062e-05 0.00% Castro::subcycle_advance_ctu() 10 3.852e-05 5.064e-05 7.397e-05 0.00% Castro::Castro() 1 5.421e-05 6.398e-05 7.392e-05 0.00% Castro::do_new_sources() 10 5.27e-05 6.32e-05 7.39e-05 0.00% Amr::FinalizeInit() 1 4.484e-06 1.465e-05 7.022e-05 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.763e-05 6.953e-05 0.00% FabArrayBase::getCPC() 41 4.639e-05 5.286e-05 6.289e-05 0.00% Amr::defBaseLevel() 1 2.788e-05 4.309e-05 5.348e-05 0.00% Castro::advance() 10 3.883e-05 4.413e-05 5.085e-05 0.00% Castro::apply_source_to_state() 20 3.651e-05 4.414e-05 4.897e-05 0.00% Castro::construct_new_gravity() 10 2.729e-05 3.295e-05 4.032e-05 0.00% Castro::construct_old_gravity() 10 3.369e-05 3.495e-05 3.634e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.495e-05 2.151e-05 3.172e-05 0.00% Castro::enforce_speed_limit() 62 2.509e-05 2.738e-05 3.1e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.578e-05 2.969e-05 0.00% Castro::check_for_nan() 20 2.152e-05 2.322e-05 2.615e-05 0.00% Castro::expand_state() 10 1.984e-05 2.22e-05 2.587e-05 0.00% Castro::post_timestep() 10 1.263e-05 1.474e-05 2.041e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.322e-05 1.916e-05 0.00% Castro::post_init() 1 1.334e-05 1.548e-05 1.794e-05 0.00% Castro::retry_advance_ctu() 10 6.391e-06 1.072e-05 1.537e-05 0.00% Gravity::set_mass_offset() 10 7.999e-06 9.928e-06 1.358e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.309e-06 6.011e-06 1.088e-05 0.00% Castro::computeNewDt() 9 7.193e-06 8.226e-06 1.054e-05 0.00% Gravity::swapTimeLevels() 10 7.171e-06 9.047e-06 1.009e-05 0.00% Castro::FluxRegCrseInit 10 7.231e-06 8.194e-06 9.431e-06 0.00% Castro::create_source_corrector() 10 6.904e-06 7.93e-06 8.543e-06 0.00% Castro::post_regrid() 1 1.86e-06 4.229e-06 5.948e-06 0.00% Castro::computeInitialDt() 2 3.567e-06 4.508e-06 5.579e-06 0.00% Amr::InitializeInit() 1 1.989e-06 2.607e-06 5.07e-06 0.00% Castro::FluxRegFineAdd() 10 2.207e-06 2.56e-06 2.855e-06 0.00% Amr::init() 1 2.1e-06 2.371e-06 2.835e-06 0.00% Amr::initialInit() 1 1.559e-06 1.774e-06 1.969e-06 0.00% DistributionMapping::Distribute() 1 9.19e-07 1.111e-06 1.308e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.569 3.569 100.00% Amr::coarseTimeStep() 10 3.323 3.323 3.323 93.11% Amr::timeStep() 10 3.31 3.31 3.311 92.77% Castro::advance() 10 3.294 3.294 3.295 92.33% Castro::subcycle_advance_ctu() 10 3.208 3.218 3.228 90.44% Castro::do_advance_ctu() 10 3.208 3.218 3.228 90.44% Castro::construct_ctu_hydro_source() 10 2.471 2.475 2.478 69.43% Gravity::make_radial_gravity() 21 0.3075 0.3175 0.3286 9.21% Amr::init() 1 0.2308 0.2309 0.231 6.47% Gravity::get_new_grav_vector() 11 0.2138 0.2161 0.2168 6.08% Amr::initialInit() 1 0.2158 0.2161 0.2164 6.06% AmrLevel::FillPatch() 41 0.1773 0.1994 0.2162 6.06% Castro::construct_old_gravity() 10 0.1797 0.1863 0.1959 5.49% Gravity::get_old_grav_vector() 10 0.1787 0.1855 0.1953 5.47% Castro::construct_new_gravity() 10 0.1898 0.1912 0.192 5.38% FillPatchIterator::Initialize 41 0.1477 0.1689 0.1915 5.37% Amr::InitializeInit() 1 0.06901 0.1214 0.1874 5.25% Amr::defBaseLevel() 1 0.06901 0.1214 0.1874 5.25% Castro::initialize_do_advance() 10 0.1575 0.1677 0.1751 4.90% Castro::initData() 1 0.0524 0.1039 0.1657 4.64% Castro::estTimeStep() 21 0.04211 0.1011 0.1623 4.55% check_for_negative_density() 10 0.01804 0.08947 0.1594 4.47% FillPatchIterator::FillFromLevel0() 41 0.1082 0.128 0.1563 4.38% FillPatchSingleLevel 41 0.1081 0.1279 0.1562 4.38% Amr::FinalizeInit() 1 0.02843 0.09475 0.147 4.12% FabArray::ParallelCopy() 41 0.07581 0.0966 0.1275 3.57% Castro::expand_state() 10 0.1006 0.114 0.1227 3.44% Castro::computeInitialDt() 2 0.002308 0.06843 0.1207 3.38% Castro::clean_state() 62 0.1136 0.116 0.1201 3.36% Castro::do_old_sources() 10 0.08569 0.09113 0.09532 2.67% FabArray::ParallelCopy_finish() 41 0.03573 0.05631 0.09289 2.60% amrex::Copy() 193 0.06637 0.07654 0.08498 2.38% FabArray::setVal() 143 0.06157 0.07022 0.08289 2.32% Castro::initialize_advance() 10 0.06199 0.07254 0.08244 2.31% Castro::do_new_sources() 10 0.05916 0.06694 0.07926 2.22% Castro::computeTemp() 63 0.06568 0.06808 0.07055 1.98% Castro::reset_internal_energy(MultiFab) 63 0.0465 0.04825 0.04969 1.39% Castro::reset_internal_energy(Fab) 1008 0.04623 0.04797 0.04941 1.38% Castro::normalize_species() 62 0.04176 0.04276 0.044 1.23% FabArray::ParallelCopy_nowait() 41 0.0345 0.04021 0.04181 1.17% Castro::construct_new_source() 50 0.02874 0.03191 0.03702 1.04% StateDataPhysBCFunct::() 41 0.02867 0.03126 0.03382 0.95% StateData::FillBoundary(geom) 41 0.02854 0.03116 0.03372 0.94% Castro::finalize_do_advance() 10 0.01203 0.02456 0.03372 0.94% Gravity::interpolate_monopole_grav() 21 0.02794 0.02982 0.03265 0.91% Castro::construct_new_gravity_source() 10 0.02262 0.02575 0.03049 0.85% Castro::post_init() 1 0.02569 0.02592 0.02608 0.73% Amr::writePlotFile() 2 0.02431 0.02467 0.02494 0.70% Castro::post_timestep() 10 0.01516 0.01596 0.01633 0.46% VisMF::Write(FabArray) 2 0.01242 0.01303 0.01555 0.44% Castro::apply_source_to_state() 20 0.01102 0.01305 0.01382 0.39% FabArray::Saxpy() 20 0.01098 0.013 0.01378 0.39% Castro::Castro() 1 0.00906 0.01104 0.0137 0.38% Castro::check_for_nan() 20 0.009478 0.01057 0.01189 0.33% MultiFab::contains_nan() 20 0.009452 0.01055 0.01187 0.33% FabArray::setDomainBndry() 41 0.007935 0.009535 0.0111 0.31% Castro::construct_old_source() 50 0.007161 0.009582 0.0104 0.29% Castro::construct_old_gravity_source() 10 0.007115 0.009515 0.01033 0.29% Castro::initMFs() 1 0.006081 0.007441 0.009611 0.27% Castro::computeNewDt() 9 0.009263 0.009271 0.009279 0.26% AmrLevel::AmrLevel(dm) 1 0.005182 0.00624 0.007969 0.22% StateData::define() 4 0.005163 0.006219 0.00795 0.22% Castro::enforce_min_density() 62 0.005641 0.006011 0.006303 0.18% Castro::swap_state_time_levels() 10 0.003047 0.004069 0.004849 0.14% Castro::finalize_advance() 10 0.002967 0.003722 0.004471 0.13% Castro::buildMetrics() 1 0.001572 0.001933 0.002486 0.07% Castro::post_regrid() 1 0.001557 0.001666 0.00187 0.05% Amr::InitAmr() 1 0.0002726 0.0003644 0.0005019 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.299e-05 0.0001666 0.0002785 0.01% DistributionMapping::LeastUsedCPUs() 1 7.369e-06 0.0001594 0.0002666 0.01% Castro::enforce_consistent_e() 1 7.985e-05 0.0001003 0.0001387 0.00% FabArrayBase::getCPC() 41 6.782e-05 7.864e-05 9.258e-05 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.763e-05 6.953e-05 0.00% Castro::enforce_speed_limit() 62 2.509e-05 2.738e-05 3.1e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.578e-05 2.969e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.322e-05 1.916e-05 0.00% Castro::retry_advance_ctu() 10 6.391e-06 1.072e-05 1.537e-05 0.00% Gravity::set_mass_offset() 10 7.999e-06 9.928e-06 1.358e-05 0.00% Gravity::swapTimeLevels() 10 7.171e-06 9.047e-06 1.009e-05 0.00% Castro::FluxRegCrseInit 10 7.231e-06 8.194e-06 9.431e-06 0.00% Castro::create_source_corrector() 10 6.904e-06 7.93e-06 8.543e-06 0.00% Castro::FluxRegFineAdd() 10 2.207e-06 2.56e-06 2.855e-06 0.00% DistributionMapping::Distribute() 1 9.19e-07 1.111e-06 1.308e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-19-g54c337f36164) finalized