Initializing AMReX (23.10-21-g152fdac6aa4c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-21-g152fdac6aa4c) initialized Starting run at 05:20:39 UTC on 2023-10-24. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-21-g152fdac6a Microphysics git describe: 23.10-17-g7974a0d1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01720907 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36204482 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.408359967 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.412266695 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.39333989 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.423075617 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.395993059 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.392640023 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.394623611 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.394771673 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.4124512 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.042351625 seconds Ending run at 05:20:43 UTC on 2023-10-24. Run time = 4.240051849 Run time without initialization = 4.040606476 Average number of zones advanced per microsecond: 0.649 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.239 ... 4.24 ... 4.24 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5282 2.7275 2.9282 69.06% check_for_negative_density() 10 0.04843 0.2513 0.4569 10.78% Gravity::make_radial_gravity() 21 0.2906 0.306 0.3221 7.60% Castro::initData() 1 0.04784 0.0883 0.1313 3.10% amrex::Copy() 193 0.09983 0.1101 0.1219 2.87% Castro::estTimeStep() 21 0.02339 0.07385 0.1212 2.86% FabArray::setVal() 143 0.08662 0.09256 0.09886 2.33% FabArray::ParallelCopy_nowait() 41 0.05683 0.05936 0.06138 1.45% FabArray::ParallelCopy_finish() 41 0.04395 0.05295 0.0595 1.40% FillPatchIterator::Initialize 41 0.04653 0.05089 0.05668 1.34% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04991 0.05142 1.21% StateData::FillBoundary(geom) 41 0.03393 0.03782 0.04562 1.08% Amr::writePlotFile() 2 0.01223 0.03036 0.04558 1.07% VisMF::Write(FabArray) 2 0.01207 0.02655 0.04456 1.05% Castro::normalize_species() 62 0.04167 0.04286 0.04426 1.04% Castro::construct_new_gravity_source() 10 0.02616 0.02987 0.03412 0.80% Gravity::interpolate_monopole_grav() 21 0.02756 0.02925 0.03002 0.71% Castro::initialize_do_advance() 10 0.0221 0.02444 0.026 0.61% Castro::computeTemp() 63 0.01895 0.02045 0.02182 0.51% FabArray::setDomainBndry() 41 0.01534 0.01708 0.02027 0.48% FabArray::Saxpy() 20 0.01657 0.01795 0.01881 0.44% MultiFab::contains_nan() 20 0.01224 0.01417 0.01661 0.39% Castro::initialize_advance() 10 0.0132 0.01464 0.01631 0.38% Castro::construct_old_gravity_source() 10 0.01407 0.0146 0.01502 0.35% Castro::construct_new_source() 50 0.007043 0.007714 0.008287 0.20% main() 1 0.006572 0.007484 0.007911 0.19% Castro::initMFs() 1 0.006356 0.006806 0.007615 0.18% Castro::enforce_min_density() 62 0.006484 0.006978 0.007304 0.17% StateData::define() 4 0.005204 0.005506 0.006062 0.14% Gravity::get_new_grav_vector() 11 0.004037 0.005028 0.005887 0.14% Castro::swap_state_time_levels() 10 0.003365 0.004415 0.004604 0.11% Amr::coarseTimeStep() 10 0.001302 0.002508 0.004062 0.10% Gravity::get_old_grav_vector() 10 0.002611 0.002917 0.003323 0.08% Castro::finalize_do_advance() 10 0.001141 0.001597 0.001923 0.05% Castro::buildMetrics() 1 0.001501 0.001581 0.00173 0.04% AmrLevel::FillPatch() 41 0.000913 0.001123 0.001383 0.03% Amr::InitAmr() 1 0.0002677 0.000301 0.0004616 0.01% Amr::timeStep() 10 0.0001856 0.0002468 0.000453 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003036 0.0003181 0.0003317 0.01% Castro::clean_state() 62 0.0001816 0.0002031 0.0002331 0.01% DistributionMapping::LeastUsedCPUs() 1 8.762e-06 0.0001735 0.0002037 0.00% Castro::do_advance_ctu() 10 0.0001744 0.0001874 0.0001964 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001533 0.0001667 0.0001844 0.00% Castro::do_old_sources() 10 0.0001206 0.0001371 0.0001574 0.00% StateDataPhysBCFunct::() 41 0.0001242 0.0001323 0.0001417 0.00% Castro::finalize_advance() 10 0.0001059 0.0001224 0.0001381 0.00% Castro::Castro() 1 5.934e-05 8.896e-05 0.0001235 0.00% Castro::construct_old_source() 50 8.406e-05 0.0001029 0.0001224 0.00% FillPatchSingleLevel 41 9.124e-05 9.978e-05 0.0001204 0.00% FabArray::ParallelCopy() 41 9.3e-05 0.0001058 0.0001201 0.00% Castro::do_new_sources() 10 7.547e-05 8.858e-05 9.944e-05 0.00% Castro::enforce_consistent_e() 1 7.955e-05 8.478e-05 9.095e-05 0.00% FabArrayBase::getCPC() 41 7.118e-05 8.09e-05 9.072e-05 0.00% Amr::writeSmallPlotFile() 1 3.552e-05 5.225e-05 8.902e-05 0.00% Castro::apply_source_to_state() 20 5.726e-05 6.823e-05 8.223e-05 0.00% Castro::subcycle_advance_ctu() 10 5.995e-05 6.736e-05 7.268e-05 0.00% Amr::FinalizeInit() 1 3.326e-06 1.33e-05 7.062e-05 0.00% Castro::advance() 10 4.949e-05 5.767e-05 6.569e-05 0.00% Castro::expand_state() 10 2.884e-05 4.175e-05 5.983e-05 0.00% Castro::construct_new_gravity() 10 3.22e-05 4.347e-05 5.503e-05 0.00% Castro::construct_old_gravity() 10 4.262e-05 4.828e-05 5.397e-05 0.00% Amr::defBaseLevel() 1 2.443e-05 3.708e-05 4.983e-05 0.00% Castro::enforce_speed_limit() 62 3.264e-05 3.534e-05 3.816e-05 0.00% FabArrayBase::CPC::define() 2 1.97e-05 2.57e-05 3.097e-05 0.00% Castro::check_for_nan() 20 2.505e-05 2.795e-05 3.024e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.363e-05 2.026e-05 2.818e-05 0.00% Castro::computeNewDt() 9 7.165e-06 1.227e-05 2.518e-05 0.00% Castro::post_init() 1 1.287e-05 1.669e-05 2.388e-05 0.00% Castro::post_timestep() 10 1.508e-05 1.74e-05 1.946e-05 0.00% Castro::create_source_corrector() 10 8.352e-06 1.201e-05 1.841e-05 0.00% Gravity::set_mass_offset() 10 8.439e-06 1.321e-05 1.73e-05 0.00% Gravity::swapTimeLevels() 10 1.147e-05 1.513e-05 1.66e-05 0.00% Castro::FluxRegCrseInit 10 6.657e-06 8.76e-06 1.229e-05 0.00% Amr::initSubcycle() 1 9.895e-06 1.067e-05 1.163e-05 0.00% Amr::initialInit() 1 1.356e-06 2.532e-06 9.153e-06 0.00% Castro::retry_advance_ctu() 10 6.252e-06 7.577e-06 8.474e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.319e-06 5.922e-06 7.208e-06 0.00% DistributionMapping::Distribute() 1 1.029e-06 1.938e-06 7.131e-06 0.00% Amr::InitializeInit() 1 1.671e-06 2.284e-06 5.008e-06 0.00% Castro::computeInitialDt() 2 2.588e-06 3.205e-06 4.001e-06 0.00% Castro::post_regrid() 1 2.005e-06 2.811e-06 3.75e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 2.432e-06 3.184e-06 0.00% Amr::init() 1 1.695e-06 2.037e-06 2.907e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.239 4.24 4.24 100.00% Amr::coarseTimeStep() 10 3.99 3.99 3.99 94.11% Amr::timeStep() 10 3.976 3.977 3.979 93.83% Castro::advance() 10 3.961 3.962 3.962 93.45% Castro::subcycle_advance_ctu() 10 3.862 3.866 3.868 91.22% Castro::do_advance_ctu() 10 3.862 3.865 3.868 91.22% Castro::construct_ctu_hydro_source() 10 2.994 3 3.006 70.88% check_for_negative_density() 10 0.04843 0.2513 0.4569 10.78% Gravity::make_radial_gravity() 21 0.3138 0.3306 0.3473 8.19% AmrLevel::FillPatch() 41 0.2487 0.2641 0.2796 6.59% FillPatchIterator::Initialize 41 0.2091 0.2187 0.2309 5.45% Castro::initialize_do_advance() 10 0.2056 0.2168 0.229 5.40% Gravity::get_new_grav_vector() 11 0.2261 0.2275 0.228 5.38% Castro::construct_old_gravity() 10 0.1887 0.2023 0.2149 5.07% Gravity::get_old_grav_vector() 10 0.1879 0.2015 0.2141 5.05% Castro::construct_new_gravity() 10 0.2015 0.2027 0.2034 4.80% Amr::init() 1 0.1988 0.199 0.199 4.69% Amr::initialInit() 1 0.1807 0.1811 0.1816 4.28% Castro::expand_state() 10 0.1376 0.1491 0.1633 3.85% FillPatchIterator::FillFromLevel0() 41 0.1461 0.1507 0.1592 3.75% FillPatchSingleLevel 41 0.146 0.1506 0.159 3.75% Amr::InitializeInit() 1 0.06803 0.1088 0.1525 3.60% Amr::defBaseLevel() 1 0.06803 0.1088 0.1525 3.60% Castro::initData() 1 0.05194 0.09227 0.1348 3.18% Castro::do_old_sources() 10 0.1248 0.1273 0.1299 3.06% Castro::clean_state() 62 0.1173 0.1198 0.1237 2.92% amrex::Copy() 193 0.09983 0.1101 0.1219 2.87% Castro::estTimeStep() 21 0.02339 0.07385 0.1212 2.86% FabArray::ParallelCopy() 41 0.1048 0.1125 0.1173 2.77% Amr::FinalizeInit() 1 0.02875 0.07225 0.1127 2.66% FabArray::setVal() 143 0.08662 0.09256 0.09886 2.33% Castro::initialize_advance() 10 0.08902 0.09159 0.09513 2.24% Castro::computeInitialDt() 2 0.002379 0.04606 0.08686 2.05% Castro::do_new_sources() 10 0.06877 0.07558 0.08257 1.95% Castro::computeTemp() 63 0.06709 0.07068 0.073 1.72% FabArray::ParallelCopy_nowait() 41 0.05694 0.05946 0.06149 1.45% Amr::writePlotFile() 2 0.05981 0.06036 0.06076 1.43% FabArray::ParallelCopy_finish() 41 0.04395 0.05295 0.0595 1.40% Castro::reset_internal_energy(MultiFab) 63 0.04814 0.05023 0.05175 1.22% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04991 0.05142 1.21% StateDataPhysBCFunct::() 41 0.03406 0.03795 0.04576 1.08% StateData::FillBoundary(geom) 41 0.03393 0.03782 0.04562 1.08% VisMF::Write(FabArray) 2 0.01207 0.02655 0.04456 1.05% Castro::normalize_species() 62 0.04167 0.04286 0.04426 1.04% Castro::construct_new_source() 50 0.03359 0.03758 0.04241 1.00% Castro::construct_new_gravity_source() 10 0.02616 0.02987 0.03412 0.80% Gravity::interpolate_monopole_grav() 21 0.02756 0.02925 0.03002 0.71% Castro::finalize_do_advance() 10 0.01116 0.0203 0.02871 0.68% Castro::post_init() 1 0.02554 0.026 0.02655 0.63% FabArray::setDomainBndry() 41 0.01534 0.01708 0.02027 0.48% Castro::apply_source_to_state() 20 0.01664 0.01802 0.01888 0.45% FabArray::Saxpy() 20 0.01657 0.01795 0.01881 0.44% Castro::check_for_nan() 20 0.01227 0.0142 0.01664 0.39% MultiFab::contains_nan() 20 0.01224 0.01417 0.01661 0.39% Castro::post_timestep() 10 0.015 0.01556 0.01637 0.39% Castro::construct_old_source() 50 0.01416 0.01471 0.01512 0.36% Castro::construct_old_gravity_source() 10 0.01407 0.0146 0.01502 0.35% Castro::Castro() 1 0.01018 0.01079 0.0116 0.27% Castro::computeNewDt() 9 0.009056 0.009106 0.009141 0.22% Castro::initMFs() 1 0.006356 0.006806 0.007615 0.18% Castro::enforce_min_density() 62 0.006484 0.006978 0.007304 0.17% AmrLevel::AmrLevel(dm) 1 0.005227 0.005526 0.006085 0.14% StateData::define() 4 0.005204 0.005506 0.006062 0.14% Castro::finalize_advance() 10 0.003875 0.004425 0.004968 0.12% Castro::swap_state_time_levels() 10 0.003365 0.004415 0.004604 0.11% Castro::buildMetrics() 1 0.001618 0.001716 0.001887 0.04% Castro::post_regrid() 1 0.001464 0.001543 0.001633 0.04% Amr::InitAmr() 1 0.0002781 0.0003117 0.0004732 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.458e-05 0.0001813 0.0002118 0.00% DistributionMapping::LeastUsedCPUs() 1 8.762e-06 0.0001735 0.0002037 0.00% FabArrayBase::getCPC() 41 9.184e-05 0.0001066 0.0001191 0.00% Castro::enforce_consistent_e() 1 7.955e-05 8.478e-05 9.095e-05 0.00% Amr::writeSmallPlotFile() 1 3.552e-05 5.225e-05 8.902e-05 0.00% Castro::enforce_speed_limit() 62 3.264e-05 3.534e-05 3.816e-05 0.00% FabArrayBase::CPC::define() 2 1.97e-05 2.57e-05 3.097e-05 0.00% Castro::create_source_corrector() 10 8.352e-06 1.201e-05 1.841e-05 0.00% Gravity::set_mass_offset() 10 8.439e-06 1.321e-05 1.73e-05 0.00% Gravity::swapTimeLevels() 10 1.147e-05 1.513e-05 1.66e-05 0.00% Castro::FluxRegCrseInit 10 6.657e-06 8.76e-06 1.229e-05 0.00% Amr::initSubcycle() 1 9.895e-06 1.067e-05 1.163e-05 0.00% Castro::retry_advance_ctu() 10 6.252e-06 7.577e-06 8.474e-06 0.00% DistributionMapping::Distribute() 1 1.029e-06 1.938e-06 7.131e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 2.432e-06 3.184e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 27 B 30 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-21-g152fdac6aa4c) finalized