Initializing AMReX (23.10-21-g152fdac6aa4c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-21-g152fdac6aa4c) initialized Starting run at 05:20:14 UTC on 2023-10-25. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-21-g152fdac6a Microphysics git describe: 23.10-18-g5dd1a910 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014290137 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377511442 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.386520008 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338189042 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329320857 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354342547 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32552841 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.305884413 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.305600737 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.305445298 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306372709 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009911819 seconds Ending run at 05:20:18 UTC on 2023-10-25. Run time = 3.557711714 Run time without initialization = 3.350161187 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.556 ... 3.557 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3262 2.3554 2.3986 67.42% Gravity::make_radial_gravity() 21 0.3073 0.318 0.3268 9.19% Castro::initData() 1 0.04791 0.08785 0.1431 4.02% Castro::estTimeStep() 21 0.0247 0.094 0.1399 3.93% check_for_negative_density() 10 0.04294 0.08876 0.1211 3.40% FabArray::ParallelCopy_finish() 41 0.03438 0.05369 0.08941 2.51% amrex::Copy() 193 0.06279 0.07828 0.08862 2.49% FabArray::setVal() 143 0.0646 0.07028 0.07875 2.21% Castro::reset_internal_energy(Fab) 1008 0.04509 0.04751 0.05023 1.41% Castro::normalize_species() 62 0.04084 0.04184 0.04451 1.25% FabArray::ParallelCopy_nowait() 41 0.03573 0.0412 0.04292 1.21% StateData::FillBoundary(geom) 41 0.02974 0.03195 0.03721 1.05% FillPatchIterator::Initialize 41 0.02738 0.03269 0.03461 0.97% Castro::construct_new_gravity_source() 10 0.02226 0.02547 0.03135 0.88% Gravity::interpolate_monopole_grav() 21 0.02756 0.02923 0.02988 0.84% Castro::computeTemp() 63 0.01703 0.01928 0.02046 0.58% Castro::initialize_do_advance() 10 0.01188 0.01769 0.02027 0.57% VisMF::Write(FabArray) 2 0.01157 0.01258 0.0154 0.43% Castro::initialize_advance() 10 0.004525 0.01045 0.01348 0.38% FabArray::Saxpy() 20 0.01047 0.01259 0.01341 0.38% FabArray::setDomainBndry() 41 0.007809 0.01094 0.0131 0.37% MultiFab::contains_nan() 20 0.01 0.01099 0.01172 0.33% Amr::writePlotFile() 2 0.00622 0.009331 0.01127 0.32% Castro::construct_old_gravity_source() 10 0.00719 0.009864 0.01075 0.30% Castro::initMFs() 1 0.006171 0.006567 0.007776 0.22% Castro::enforce_min_density() 62 0.005706 0.006025 0.006413 0.18% Castro::construct_new_source() 50 0.005982 0.006163 0.006289 0.18% StateData::define() 4 0.005046 0.00531 0.005732 0.16% Gravity::get_new_grav_vector() 11 0.002719 0.003919 0.005416 0.15% Castro::swap_state_time_levels() 10 0.002992 0.004132 0.00495 0.14% main() 1 0.003357 0.004513 0.004827 0.14% Amr::coarseTimeStep() 10 0.002077 0.002867 0.003981 0.11% Gravity::get_old_grav_vector() 10 0.001633 0.002135 0.002547 0.07% Castro::buildMetrics() 1 0.001451 0.001519 0.00168 0.05% Castro::finalize_do_advance() 10 0.000465 0.0009577 0.001158 0.03% AmrLevel::FillPatch() 41 0.0006653 0.000761 0.0008193 0.02% Amr::InitAmr() 1 0.0002689 0.0003061 0.0004035 0.01% Amr::timeStep() 10 0.0001563 0.0002209 0.0003698 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002748 0.0002902 0.0003345 0.01% Castro::clean_state() 62 0.0001528 0.0001577 0.0001647 0.00% Castro::do_advance_ctu() 10 0.000127 0.0001388 0.0001578 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001077 0.0001205 0.0001425 0.00% DistributionMapping::LeastUsedCPUs() 1 7.986e-06 9.96e-05 0.0001353 0.00% StateDataPhysBCFunct::() 41 8.426e-05 9.862e-05 0.0001213 0.00% Castro::finalize_advance() 10 7.855e-05 9.763e-05 0.0001202 0.00% Castro::Castro() 1 5.499e-05 7.457e-05 0.0001145 0.00% Castro::enforce_consistent_e() 1 8.189e-05 8.923e-05 0.0001029 0.00% Castro::do_old_sources() 10 8.163e-05 9.381e-05 0.0001015 0.00% FabArray::ParallelCopy() 41 6.883e-05 7.861e-05 9.739e-05 0.00% FillPatchSingleLevel 41 6.277e-05 7.177e-05 8.6e-05 0.00% Amr::FinalizeInit() 1 4.465e-06 1.498e-05 8.548e-05 0.00% Castro::do_new_sources() 10 5.621e-05 6.621e-05 8.407e-05 0.00% Castro::construct_old_source() 50 6.134e-05 7.008e-05 7.715e-05 0.00% FabArrayBase::getCPC() 41 4.574e-05 5.785e-05 7.56e-05 0.00% Amr::writeSmallPlotFile() 1 3.119e-05 4.597e-05 6.581e-05 0.00% Castro::apply_source_to_state() 20 4.198e-05 5.129e-05 5.997e-05 0.00% Castro::subcycle_advance_ctu() 10 4.068e-05 4.82e-05 5.767e-05 0.00% Castro::advance() 10 3.742e-05 4.444e-05 5.024e-05 0.00% Castro::construct_new_gravity() 10 3.314e-05 3.527e-05 4.237e-05 0.00% Amr::defBaseLevel() 1 2.459e-05 3.22e-05 4.113e-05 0.00% Castro::construct_old_gravity() 10 3.517e-05 3.82e-05 4.088e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.783e-05 2.332e-05 3.748e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.962e-05 3.606e-05 0.00% FabArrayBase::CPC::define() 2 2.252e-05 2.629e-05 3.129e-05 0.00% Castro::post_init() 1 1.371e-05 1.732e-05 3.09e-05 0.00% Castro::expand_state() 10 2.137e-05 2.452e-05 2.87e-05 0.00% Castro::check_for_nan() 20 2.237e-05 2.388e-05 2.748e-05 0.00% Amr::initSubcycle() 1 9.96e-06 1.226e-05 2.377e-05 0.00% Castro::post_timestep() 10 1.155e-05 1.475e-05 1.916e-05 0.00% Gravity::set_mass_offset() 10 9.051e-06 1.189e-05 1.825e-05 0.00% Gravity::swapTimeLevels() 10 7.217e-06 9.726e-06 1.264e-05 0.00% Castro::create_source_corrector() 10 7.129e-06 8.687e-06 9.734e-06 0.00% Castro::FluxRegCrseInit 10 5.702e-06 7.657e-06 8.83e-06 0.00% Castro::retry_advance_ctu() 10 5.582e-06 7.224e-06 8.55e-06 0.00% Castro::computeNewDt() 9 6.964e-06 7.567e-06 8.371e-06 0.00% Castro::post_regrid() 1 2.194e-06 3.422e-06 6.311e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.866e-06 4.455e-06 6.221e-06 0.00% Castro::computeInitialDt() 2 3.392e-06 4.057e-06 5.485e-06 0.00% Amr::InitializeInit() 1 1.759e-06 2.39e-06 4.475e-06 0.00% Castro::FluxRegFineAdd() 10 2.014e-06 2.42e-06 3.284e-06 0.00% Amr::init() 1 2.033e-06 2.329e-06 2.744e-06 0.00% Amr::initialInit() 1 1.249e-06 1.717e-06 2.101e-06 0.00% DistributionMapping::Distribute() 1 8.71e-07 1.015e-06 1.209e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.556 3.557 3.558 100.00% Amr::coarseTimeStep() 10 3.335 3.336 3.336 93.75% Amr::timeStep() 10 3.321 3.322 3.322 93.38% Castro::advance() 10 3.305 3.306 3.306 92.94% Castro::subcycle_advance_ctu() 10 3.223 3.231 3.241 91.09% Castro::do_advance_ctu() 10 3.223 3.231 3.241 91.09% Castro::construct_ctu_hydro_source() 10 2.463 2.465 2.47 69.41% Gravity::make_radial_gravity() 21 0.3239 0.3343 0.342 9.61% Gravity::get_new_grav_vector() 11 0.2236 0.2251 0.226 6.35% AmrLevel::FillPatch() 41 0.1888 0.2026 0.2201 6.19% Amr::init() 1 0.207 0.2071 0.2071 5.82% Castro::construct_new_gravity() 10 0.1999 0.2009 0.2015 5.66% Castro::construct_old_gravity() 10 0.1871 0.1928 0.1984 5.58% Gravity::get_old_grav_vector() 10 0.1865 0.1922 0.1977 5.56% FillPatchIterator::Initialize 41 0.1563 0.1709 0.1954 5.49% Amr::initialInit() 1 0.1922 0.1925 0.1928 5.42% Castro::initialize_do_advance() 10 0.1624 0.1701 0.1761 4.95% Amr::InitializeInit() 1 0.06868 0.108 0.1645 4.62% Amr::defBaseLevel() 1 0.06868 0.108 0.1645 4.62% FillPatchIterator::FillFromLevel0() 41 0.1093 0.1273 0.1591 4.47% FillPatchSingleLevel 41 0.1092 0.1272 0.159 4.47% Castro::initData() 1 0.05147 0.09188 0.147 4.13% Castro::estTimeStep() 21 0.0247 0.094 0.1399 3.93% Castro::expand_state() 10 0.1072 0.1154 0.1271 3.57% FabArray::ParallelCopy() 41 0.07744 0.09505 0.1253 3.52% Amr::FinalizeInit() 1 0.02833 0.08453 0.1236 3.47% check_for_negative_density() 10 0.04294 0.08876 0.1211 3.40% Castro::clean_state() 62 0.1086 0.1142 0.1205 3.39% Castro::computeInitialDt() 2 0.002504 0.05898 0.09824 2.76% Castro::do_old_sources() 10 0.0897 0.09473 0.09679 2.72% FabArray::ParallelCopy_finish() 41 0.03438 0.05369 0.08941 2.51% amrex::Copy() 193 0.06279 0.07828 0.08862 2.49% Castro::initialize_advance() 10 0.06108 0.07119 0.07922 2.23% FabArray::setVal() 143 0.0646 0.07028 0.07875 2.21% Castro::do_new_sources() 10 0.05903 0.0654 0.07719 2.17% Castro::computeTemp() 63 0.06239 0.06707 0.07043 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04536 0.0478 0.05053 1.42% Castro::reset_internal_energy(Fab) 1008 0.04509 0.04751 0.05023 1.41% Castro::normalize_species() 62 0.04084 0.04184 0.04451 1.25% FabArray::ParallelCopy_nowait() 41 0.03584 0.04128 0.04299 1.21% Castro::construct_new_source() 50 0.02849 0.03164 0.03761 1.06% StateDataPhysBCFunct::() 41 0.02982 0.03205 0.0373 1.05% StateData::FillBoundary(geom) 41 0.02974 0.03195 0.03721 1.05% Castro::finalize_do_advance() 10 0.01349 0.02627 0.03296 0.93% Castro::construct_new_gravity_source() 10 0.02226 0.02547 0.03135 0.88% Gravity::interpolate_monopole_grav() 21 0.02756 0.02923 0.02988 0.84% Castro::post_init() 1 0.02497 0.02524 0.02544 0.72% Amr::writePlotFile() 2 0.02427 0.02454 0.02478 0.70% Castro::post_timestep() 10 0.01425 0.0155 0.01633 0.46% VisMF::Write(FabArray) 2 0.01157 0.01258 0.0154 0.43% Castro::apply_source_to_state() 20 0.01052 0.01264 0.01346 0.38% FabArray::Saxpy() 20 0.01047 0.01259 0.01341 0.38% FabArray::setDomainBndry() 41 0.007809 0.01094 0.0131 0.37% Castro::check_for_nan() 20 0.01002 0.01102 0.01174 0.33% MultiFab::contains_nan() 20 0.01 0.01099 0.01172 0.33% Castro::Castro() 1 0.01022 0.01065 0.01156 0.33% Castro::construct_old_source() 50 0.007253 0.009934 0.01083 0.30% Castro::construct_old_gravity_source() 10 0.00719 0.009864 0.01075 0.30% Castro::computeNewDt() 9 0.009709 0.009727 0.009737 0.27% Castro::initMFs() 1 0.006171 0.006567 0.007776 0.22% Castro::enforce_min_density() 62 0.005706 0.006025 0.006413 0.18% AmrLevel::AmrLevel(dm) 1 0.005065 0.005333 0.005769 0.16% StateData::define() 4 0.005046 0.00531 0.005732 0.16% Castro::swap_state_time_levels() 10 0.002992 0.004132 0.00495 0.14% Castro::finalize_advance() 10 0.00302 0.003571 0.00411 0.12% Castro::buildMetrics() 1 0.00157 0.001647 0.00182 0.05% Castro::post_regrid() 1 0.001495 0.001582 0.001748 0.05% Amr::InitAmr() 1 0.0002789 0.0003183 0.0004138 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.277e-05 0.0001051 0.0001427 0.00% DistributionMapping::LeastUsedCPUs() 1 7.986e-06 9.96e-05 0.0001353 0.00% Castro::enforce_consistent_e() 1 8.189e-05 8.923e-05 0.0001029 0.00% FabArrayBase::getCPC() 41 7.388e-05 8.414e-05 0.0001021 0.00% Amr::writeSmallPlotFile() 1 3.119e-05 4.597e-05 6.581e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.962e-05 3.606e-05 0.00% FabArrayBase::CPC::define() 2 2.252e-05 2.629e-05 3.129e-05 0.00% Amr::initSubcycle() 1 9.96e-06 1.226e-05 2.377e-05 0.00% Gravity::set_mass_offset() 10 9.051e-06 1.189e-05 1.825e-05 0.00% Gravity::swapTimeLevels() 10 7.217e-06 9.726e-06 1.264e-05 0.00% Castro::create_source_corrector() 10 7.129e-06 8.687e-06 9.734e-06 0.00% Castro::FluxRegCrseInit 10 5.702e-06 7.657e-06 8.83e-06 0.00% Castro::retry_advance_ctu() 10 5.582e-06 7.224e-06 8.55e-06 0.00% Castro::FluxRegFineAdd() 10 2.014e-06 2.42e-06 3.284e-06 0.00% DistributionMapping::Distribute() 1 8.71e-07 1.015e-06 1.209e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-21-g152fdac6aa4c) finalized