Initializing AMReX (23.10-21-g152fdac6aa4c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-21-g152fdac6aa4c) initialized Starting run at 05:21:21 UTC on 2023-10-26. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-21-g152fdac6a Microphysics git describe: 23.10-18-g5dd1a910 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016820777 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373733082 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.387134936 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.403397012 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.398136626 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.422444674 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.398238944 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.392028762 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.395679675 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.394779945 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.420140193 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.016106866 seconds Ending run at 05:21:25 UTC on 2023-10-26. Run time = 4.20694256 Run time without initialization = 4.008557023 Average number of zones advanced per microsecond: 0.654 Average number of zones advanced per microsecond per rank: 0.082 TinyProfiler total time across processes [min...avg...max]: 4.206 ... 4.207 ... 4.207 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5366 2.7306 2.9220 69.46% check_for_negative_density() 10 0.02449 0.2186 0.416 9.89% Gravity::make_radial_gravity() 21 0.3105 0.3238 0.3406 8.10% amrex::Copy() 193 0.1019 0.112 0.1235 2.94% Castro::initData() 1 0.04756 0.09386 0.1202 2.86% Castro::estTimeStep() 21 0.02322 0.05612 0.1113 2.65% FabArray::setVal() 143 0.09142 0.09563 0.102 2.42% FabArray::ParallelCopy_nowait() 41 0.05994 0.06189 0.06424 1.53% FabArray::ParallelCopy_finish() 41 0.04972 0.05439 0.05949 1.41% FillPatchIterator::Initialize 41 0.04793 0.05293 0.05926 1.41% Castro::reset_internal_energy(Fab) 1008 0.05045 0.05179 0.05296 1.26% StateData::FillBoundary(geom) 41 0.03337 0.03829 0.04661 1.11% Castro::normalize_species() 62 0.04176 0.04215 0.04271 1.02% Castro::construct_new_gravity_source() 10 0.02708 0.03018 0.03391 0.81% Gravity::interpolate_monopole_grav() 21 0.02842 0.02941 0.03063 0.73% Castro::initialize_do_advance() 10 0.02291 0.02607 0.02869 0.68% Castro::computeTemp() 63 0.02039 0.02135 0.02239 0.53% FabArray::setDomainBndry() 41 0.01572 0.01828 0.02059 0.49% FabArray::Saxpy() 20 0.01723 0.01852 0.01966 0.47% VisMF::Write(FabArray) 2 0.01298 0.01411 0.01842 0.44% Amr::writePlotFile() 2 0.0106 0.01605 0.01815 0.43% Castro::initialize_advance() 10 0.0138 0.01516 0.0166 0.39% Castro::construct_old_gravity_source() 10 0.01393 0.01522 0.01611 0.38% MultiFab::contains_nan() 20 0.01144 0.01437 0.01602 0.38% Castro::initMFs() 1 0.006148 0.007303 0.01049 0.25% Castro::construct_new_source() 50 0.007282 0.007876 0.008638 0.21% StateData::define() 4 0.005126 0.00583 0.007766 0.18% Castro::enforce_min_density() 62 0.007045 0.007221 0.007455 0.18% Gravity::get_new_grav_vector() 11 0.004044 0.005156 0.006384 0.15% main() 1 0.005379 0.005798 0.006011 0.14% Castro::swap_state_time_levels() 10 0.003149 0.004336 0.00515 0.12% Gravity::get_old_grav_vector() 10 0.002769 0.002985 0.003264 0.08% Amr::coarseTimeStep() 10 0.001116 0.002089 0.002705 0.06% Castro::buildMetrics() 1 0.001443 0.001655 0.00223 0.05% Castro::finalize_do_advance() 10 0.001042 0.001265 0.001454 0.03% AmrLevel::FillPatch() 41 0.0008498 0.0009583 0.001032 0.02% Amr::InitAmr() 1 0.0002612 0.0003436 0.0006521 0.02% Amr::timeStep() 10 0.0001838 0.0002639 0.0005184 0.01% DistributionMapping::LeastUsedCPUs() 1 7.112e-06 0.0003365 0.0004215 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002929 0.0003243 0.0003824 0.01% Castro::clean_state() 62 0.0001892 0.0002013 0.0002359 0.01% Castro::do_advance_ctu() 10 0.0001662 0.0001978 0.0002312 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001541 0.0001667 0.0001837 0.00% Castro::finalize_advance() 10 0.0001055 0.0001333 0.0001655 0.00% Castro::do_old_sources() 10 0.0001174 0.0001443 0.0001628 0.00% StateDataPhysBCFunct::() 41 0.0001166 0.000128 0.0001523 0.00% Castro::construct_old_source() 50 7.693e-05 0.0001111 0.0001406 0.00% FabArray::ParallelCopy() 41 9.81e-05 0.0001166 0.000137 0.00% Castro::enforce_consistent_e() 1 7.737e-05 0.0001027 0.0001304 0.00% FillPatchSingleLevel 41 8.719e-05 9.831e-05 0.0001075 0.00% FabArrayBase::getCPC() 41 6.721e-05 8.336e-05 0.0001012 0.00% Castro::do_new_sources() 10 8.077e-05 9.025e-05 0.0001006 0.00% Castro::Castro() 1 6.206e-05 7.736e-05 9.208e-05 0.00% Castro::apply_source_to_state() 20 6.139e-05 7.35e-05 8.968e-05 0.00% Castro::subcycle_advance_ctu() 10 6.057e-05 6.692e-05 7.654e-05 0.00% Amr::FinalizeInit() 1 3.183e-06 1.292e-05 7.276e-05 0.00% Castro::advance() 10 4.59e-05 5.805e-05 6.674e-05 0.00% Castro::expand_state() 10 3.502e-05 4.526e-05 6.036e-05 0.00% Castro::construct_new_gravity() 10 3.348e-05 4.391e-05 5.617e-05 0.00% FabArrayBase::CPC::define() 2 2.079e-05 3.091e-05 5.293e-05 0.00% Castro::construct_old_gravity() 10 4.212e-05 4.717e-05 5.255e-05 0.00% Amr::writeSmallPlotFile() 1 3.348e-05 4.159e-05 5.122e-05 0.00% Amr::defBaseLevel() 1 2.385e-05 3.852e-05 4.651e-05 0.00% Castro::enforce_speed_limit() 62 3.365e-05 3.7e-05 4.508e-05 0.00% Castro::check_for_nan() 20 2.418e-05 2.868e-05 3.237e-05 0.00% Castro::post_init() 1 1.227e-05 1.554e-05 2.715e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.739e-05 1.936e-05 2.241e-05 0.00% Castro::post_timestep() 10 1.706e-05 1.908e-05 2.104e-05 0.00% Gravity::swapTimeLevels() 10 7.666e-06 1.335e-05 1.927e-05 0.00% Amr::initSubcycle() 1 9.874e-06 1.232e-05 1.912e-05 0.00% Castro::create_source_corrector() 10 8.925e-06 1.156e-05 1.648e-05 0.00% Gravity::set_mass_offset() 10 8.991e-06 1.249e-05 1.615e-05 0.00% Castro::computeNewDt() 9 6.806e-06 8.707e-06 1.41e-05 0.00% Castro::FluxRegCrseInit 10 6.356e-06 9.259e-06 1.181e-05 0.00% Castro::retry_advance_ctu() 10 6.282e-06 7.263e-06 8.416e-06 0.00% Amr::initialInit() 1 1.238e-06 2.346e-06 7.304e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.02e-06 5.166e-06 7.154e-06 0.00% Amr::InitializeInit() 1 1.846e-06 2.599e-06 5.776e-06 0.00% Amr::init() 1 1.713e-06 2.294e-06 4.696e-06 0.00% Castro::FluxRegFineAdd() 10 2.07e-06 2.775e-06 3.962e-06 0.00% Castro::computeInitialDt() 2 2.783e-06 3.32e-06 3.739e-06 0.00% Castro::post_regrid() 1 2.205e-06 2.891e-06 3.734e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.086e-06 1.48e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.206 4.207 4.207 100.00% Amr::coarseTimeStep() 10 3.987 3.987 3.987 94.76% Amr::timeStep() 10 3.973 3.974 3.975 94.48% Castro::advance() 10 3.957 3.958 3.958 94.09% Castro::subcycle_advance_ctu() 10 3.855 3.858 3.861 91.78% Castro::do_advance_ctu() 10 3.855 3.858 3.861 91.77% Castro::construct_ctu_hydro_source() 10 2.966 2.971 2.975 70.70% check_for_negative_density() 10 0.02449 0.2186 0.416 9.89% Gravity::make_radial_gravity() 21 0.3343 0.3488 0.3673 8.73% AmrLevel::FillPatch() 41 0.2538 0.2724 0.2892 6.87% Gravity::get_new_grav_vector() 11 0.2415 0.2433 0.2454 5.83% FillPatchIterator::Initialize 41 0.2141 0.2264 0.2375 5.65% Castro::initialize_do_advance() 10 0.2087 0.2229 0.2335 5.55% Castro::construct_old_gravity() 10 0.1953 0.2066 0.221 5.25% Gravity::get_old_grav_vector() 10 0.1944 0.2057 0.2202 5.23% Castro::construct_new_gravity() 10 0.2073 0.2079 0.2101 4.99% Amr::init() 1 0.1975 0.1979 0.1979 4.71% Amr::initialInit() 1 0.1796 0.1803 0.1808 4.30% Castro::expand_state() 10 0.1377 0.1528 0.1643 3.90% FillPatchIterator::FillFromLevel0() 41 0.1477 0.1552 0.1628 3.87% FillPatchSingleLevel 41 0.1476 0.155 0.1627 3.87% Amr::InitializeInit() 1 0.06739 0.1158 0.1404 3.34% Amr::defBaseLevel() 1 0.06739 0.1158 0.1404 3.34% Castro::do_old_sources() 10 0.1302 0.1322 0.1345 3.20% Castro::initData() 1 0.0514 0.09811 0.1244 2.96% Castro::clean_state() 62 0.1199 0.122 0.1242 2.95% amrex::Copy() 193 0.1019 0.112 0.1235 2.94% FabArray::ParallelCopy() 41 0.1106 0.1165 0.12 2.85% Amr::FinalizeInit() 1 0.04021 0.06456 0.1132 2.69% Castro::estTimeStep() 21 0.02322 0.05612 0.1113 2.65% FabArray::setVal() 143 0.09142 0.09563 0.102 2.42% Castro::initialize_advance() 10 0.09202 0.09467 0.09766 2.32% Castro::do_new_sources() 10 0.07 0.07637 0.08359 1.99% Castro::computeInitialDt() 2 0.00284 0.02735 0.07581 1.80% Castro::computeTemp() 63 0.07141 0.07346 0.07554 1.80% FabArray::ParallelCopy_nowait() 41 0.06004 0.06201 0.06435 1.53% FabArray::ParallelCopy_finish() 41 0.04972 0.05439 0.05949 1.41% Castro::reset_internal_energy(MultiFab) 63 0.05075 0.05212 0.0533 1.27% Castro::reset_internal_energy(Fab) 1008 0.05045 0.05179 0.05296 1.26% StateDataPhysBCFunct::() 41 0.03349 0.03842 0.04674 1.11% StateData::FillBoundary(geom) 41 0.03337 0.03829 0.04661 1.11% Castro::normalize_species() 62 0.04176 0.04215 0.04271 1.02% Castro::construct_new_source() 50 0.03437 0.03805 0.04255 1.01% Castro::post_init() 1 0.03605 0.03662 0.0372 0.88% Amr::writePlotFile() 2 0.03305 0.03375 0.03455 0.82% Castro::construct_new_gravity_source() 10 0.02708 0.03018 0.03391 0.81% Gravity::interpolate_monopole_grav() 21 0.02842 0.02941 0.03063 0.73% Castro::finalize_do_advance() 10 0.01236 0.02079 0.02827 0.67% FabArray::setDomainBndry() 41 0.01572 0.01828 0.02059 0.49% Castro::apply_source_to_state() 20 0.01731 0.0186 0.01974 0.47% FabArray::Saxpy() 20 0.01723 0.01852 0.01966 0.47% VisMF::Write(FabArray) 2 0.01298 0.01411 0.01842 0.44% Castro::post_timestep() 10 0.01549 0.01583 0.0165 0.39% Castro::construct_old_source() 50 0.01401 0.01533 0.01625 0.39% Castro::construct_old_gravity_source() 10 0.01393 0.01522 0.01611 0.38% Castro::check_for_nan() 20 0.01146 0.0144 0.01605 0.38% MultiFab::contains_nan() 20 0.01144 0.01437 0.01602 0.38% Castro::Castro() 1 0.01027 0.01141 0.01448 0.34% Castro::initMFs() 1 0.006148 0.007303 0.01049 0.25% Castro::computeNewDt() 9 0.009243 0.009252 0.009259 0.22% AmrLevel::AmrLevel(dm) 1 0.005144 0.005849 0.007785 0.19% StateData::define() 4 0.005126 0.00583 0.007766 0.18% Castro::enforce_min_density() 62 0.007045 0.007221 0.007455 0.18% Castro::swap_state_time_levels() 10 0.003149 0.004336 0.00515 0.12% Castro::finalize_advance() 10 0.004065 0.004638 0.005068 0.12% Castro::post_regrid() 1 0.001471 0.001883 0.002866 0.07% Castro::buildMetrics() 1 0.001562 0.001791 0.002433 0.06% Amr::InitAmr() 1 0.0002713 0.0003559 0.0006712 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.256e-05 0.0003428 0.0004294 0.01% DistributionMapping::LeastUsedCPUs() 1 7.112e-06 0.0003365 0.0004215 0.01% FabArrayBase::getCPC() 41 9.589e-05 0.0001143 0.0001541 0.00% Castro::enforce_consistent_e() 1 7.737e-05 0.0001027 0.0001304 0.00% FabArrayBase::CPC::define() 2 2.079e-05 3.091e-05 5.293e-05 0.00% Amr::writeSmallPlotFile() 1 3.348e-05 4.159e-05 5.122e-05 0.00% Castro::enforce_speed_limit() 62 3.365e-05 3.7e-05 4.508e-05 0.00% Gravity::swapTimeLevels() 10 7.666e-06 1.335e-05 1.927e-05 0.00% Amr::initSubcycle() 1 9.874e-06 1.232e-05 1.912e-05 0.00% Castro::create_source_corrector() 10 8.925e-06 1.156e-05 1.648e-05 0.00% Gravity::set_mass_offset() 10 8.991e-06 1.249e-05 1.615e-05 0.00% Castro::FluxRegCrseInit 10 6.356e-06 9.259e-06 1.181e-05 0.00% Castro::retry_advance_ctu() 10 6.282e-06 7.263e-06 8.416e-06 0.00% Castro::FluxRegFineAdd() 10 2.07e-06 2.775e-06 3.962e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.086e-06 1.48e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 31 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-21-g152fdac6aa4c) finalized