Initializing AMReX (23.10-22-gbe6c6415467d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-22-gbe6c6415467d) initialized Starting run at 05:20:54 UTC on 2023-10-27. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-22-gbe6c64154 Microphysics git describe: 23.10-18-g5dd1a910 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014292811 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357847423 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354967516 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33668541 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334771973 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.335881083 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.365233603 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309906203 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306793298 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30734371 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307169777 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009959133 seconds Ending run at 05:20:58 UTC on 2023-10-27. Run time = 3.511736149 Run time without initialization = 3.330855236 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.511 ... 3.512 ... 3.512 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2766 2.3492 2.4091 68.60% Gravity::make_radial_gravity() 21 0.2849 0.3026 0.3178 9.05% check_for_negative_density() 10 0.0123 0.0746 0.149 4.24% Castro::initData() 1 0.04892 0.08974 0.1202 3.42% amrex::Copy() 193 0.07633 0.08367 0.09859 2.81% Castro::estTimeStep() 21 0.02349 0.0558 0.09708 2.76% FabArray::setVal() 143 0.07099 0.07806 0.08908 2.54% FabArray::ParallelCopy_finish() 41 0.04995 0.05724 0.06643 1.89% Castro::reset_internal_energy(Fab) 1008 0.04597 0.0477 0.04917 1.40% FabArray::ParallelCopy_nowait() 41 0.04276 0.04371 0.04542 1.29% Castro::normalize_species() 62 0.04068 0.04165 0.04381 1.25% FillPatchIterator::Initialize 41 0.02767 0.03394 0.03662 1.04% StateData::FillBoundary(geom) 41 0.0286 0.03232 0.0362 1.03% Gravity::interpolate_monopole_grav() 21 0.02763 0.02917 0.02984 0.85% Castro::construct_new_gravity_source() 10 0.02373 0.02511 0.02646 0.75% Castro::initialize_do_advance() 10 0.01698 0.01896 0.0221 0.63% Castro::computeTemp() 63 0.01891 0.0197 0.02031 0.58% Castro::initialize_advance() 10 0.01109 0.01366 0.01633 0.46% VisMF::Write(FabArray) 2 0.01205 0.01272 0.01518 0.43% MultiFab::contains_nan() 20 0.01 0.01182 0.01474 0.42% FabArray::Saxpy() 20 0.01229 0.0137 0.01447 0.41% FabArray::setDomainBndry() 41 0.007339 0.009996 0.01114 0.32% Castro::construct_old_gravity_source() 10 0.009665 0.01055 0.01104 0.31% Castro::initMFs() 1 0.006069 0.007129 0.01026 0.29% Amr::writePlotFile() 2 0.00632 0.008635 0.009267 0.26% StateData::define() 4 0.005054 0.005761 0.007833 0.22% Castro::construct_new_source() 50 0.006352 0.006611 0.006888 0.20% Castro::enforce_min_density() 62 0.005717 0.006125 0.006498 0.19% Castro::swap_state_time_levels() 10 0.003278 0.004301 0.004491 0.13% Gravity::get_new_grav_vector() 11 0.002928 0.003523 0.003916 0.11% main() 1 0.003359 0.003509 0.003643 0.10% Amr::coarseTimeStep() 10 0.001179 0.001944 0.002594 0.07% Gravity::get_old_grav_vector() 10 0.001527 0.002048 0.002504 0.07% Castro::buildMetrics() 1 0.001424 0.001638 0.002237 0.06% Castro::finalize_do_advance() 10 0.00107 0.001256 0.001435 0.04% AmrLevel::FillPatch() 41 0.0006893 0.0007432 0.0008122 0.02% Amr::InitAmr() 1 0.0002665 0.0003373 0.0004959 0.01% Amr::timeStep() 10 0.0001357 0.0002117 0.0003671 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002701 0.0002838 0.0003002 0.01% DistributionMapping::LeastUsedCPUs() 1 7.226e-06 0.0001813 0.000259 0.01% Castro::clean_state() 62 0.0001345 0.0001521 0.0001854 0.01% StateDataPhysBCFunct::() 41 8.611e-05 0.000124 0.0001844 0.01% Castro::do_advance_ctu() 10 0.0001209 0.0001388 0.0001617 0.00% FillPatchIterator::FillFromLevel0() 41 9.56e-05 0.0001196 0.0001399 0.00% Castro::finalize_advance() 10 8.324e-05 9.787e-05 0.0001202 0.00% Castro::do_old_sources() 10 7.591e-05 9.327e-05 0.0001144 0.00% Castro::enforce_consistent_e() 1 7.516e-05 8.534e-05 9.772e-05 0.00% Amr::FinalizeInit() 1 4.383e-06 1.657e-05 9.735e-05 0.00% Castro::do_new_sources() 10 5.256e-05 7.307e-05 9.468e-05 0.00% FillPatchSingleLevel 41 6.18e-05 7.385e-05 9.427e-05 0.00% Castro::subcycle_advance_ctu() 10 4.418e-05 6.179e-05 9.292e-05 0.00% FabArray::ParallelCopy() 41 6.698e-05 8.184e-05 9.288e-05 0.00% Castro::construct_old_source() 50 5.158e-05 7.497e-05 9.237e-05 0.00% Castro::Castro() 1 5.398e-05 6.66e-05 8.428e-05 0.00% FabArrayBase::getCPC() 41 4.862e-05 5.574e-05 7.136e-05 0.00% Castro::advance() 10 3.323e-05 4.897e-05 6.437e-05 0.00% Amr::writeSmallPlotFile() 1 3.039e-05 4.452e-05 6.087e-05 0.00% Castro::expand_state() 10 2.145e-05 3.212e-05 5.408e-05 0.00% Castro::apply_source_to_state() 20 3.741e-05 4.74e-05 5.379e-05 0.00% Amr::defBaseLevel() 1 2.878e-05 4.002e-05 4.713e-05 0.00% Castro::construct_old_gravity() 10 3.023e-05 3.525e-05 4.081e-05 0.00% Castro::construct_new_gravity() 10 2.999e-05 3.347e-05 3.982e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.548e-05 2.783e-05 3.945e-05 0.00% Castro::enforce_speed_limit() 62 2.603e-05 2.924e-05 3.384e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.676e-05 3.185e-05 0.00% Castro::check_for_nan() 20 2.179e-05 2.442e-05 2.756e-05 0.00% Castro::post_timestep() 10 1.242e-05 1.553e-05 2.242e-05 0.00% Castro::post_init() 1 1.346e-05 1.535e-05 2.004e-05 0.00% Amr::initSubcycle() 1 9.816e-06 1.225e-05 1.898e-05 0.00% Gravity::set_mass_offset() 10 7.676e-06 9.925e-06 1.239e-05 0.00% Gravity::swapTimeLevels() 10 8.117e-06 1.044e-05 1.184e-05 0.00% Castro::create_source_corrector() 10 6.828e-06 8.53e-06 1.107e-05 0.00% Castro::computeNewDt() 9 7.291e-06 8.253e-06 1.016e-05 0.00% Castro::FluxRegCrseInit 10 5.179e-06 7.203e-06 8.506e-06 0.00% Castro::retry_advance_ctu() 10 5.948e-06 6.94e-06 7.633e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.539e-06 4.471e-06 6.89e-06 0.00% Amr::init() 1 2.468e-06 3.502e-06 6.564e-06 0.00% Castro::computeInitialDt() 2 3.247e-06 3.922e-06 5.179e-06 0.00% Amr::InitializeInit() 1 1.883e-06 2.445e-06 4.898e-06 0.00% Castro::post_regrid() 1 2.224e-06 3.212e-06 4.231e-06 0.00% Castro::FluxRegFineAdd() 10 2.108e-06 2.394e-06 3.247e-06 0.00% Amr::initialInit() 1 1.397e-06 1.737e-06 2.027e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.087e-06 1.448e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.511 3.512 3.512 100.00% Amr::coarseTimeStep() 10 3.317 3.317 3.317 94.46% Amr::timeStep() 10 3.304 3.305 3.306 94.13% Castro::advance() 10 3.289 3.289 3.289 93.67% Castro::subcycle_advance_ctu() 10 3.196 3.205 3.209 91.38% Castro::do_advance_ctu() 10 3.196 3.205 3.209 91.38% Castro::construct_ctu_hydro_source() 10 2.441 2.444 2.448 69.72% Gravity::make_radial_gravity() 21 0.3012 0.3191 0.3338 9.50% AmrLevel::FillPatch() 41 0.1872 0.2115 0.2272 6.47% Castro::construct_old_gravity() 10 0.1822 0.1977 0.211 6.01% Gravity::get_old_grav_vector() 10 0.1811 0.1969 0.21 5.98% Gravity::get_new_grav_vector() 11 0.2057 0.2071 0.2084 5.93% Castro::initialize_do_advance() 10 0.1626 0.179 0.1941 5.53% FillPatchIterator::Initialize 41 0.1582 0.1777 0.1939 5.52% Castro::construct_new_gravity() 10 0.1829 0.184 0.1851 5.27% Amr::init() 1 0.1802 0.1804 0.1804 5.14% Amr::initialInit() 1 0.1658 0.166 0.1663 4.74% check_for_negative_density() 10 0.0123 0.0746 0.149 4.24% FillPatchIterator::FillFromLevel0() 41 0.1229 0.1338 0.1465 4.17% FillPatchSingleLevel 41 0.1227 0.1336 0.1464 4.17% Amr::InitializeInit() 1 0.06818 0.1108 0.1395 3.97% Amr::defBaseLevel() 1 0.06817 0.1108 0.1395 3.97% Castro::expand_state() 10 0.1028 0.1221 0.136 3.87% Castro::initData() 1 0.05267 0.09354 0.124 3.53% Castro::clean_state() 62 0.1118 0.1147 0.1177 3.35% FabArray::ParallelCopy() 41 0.09368 0.1011 0.112 3.19% Castro::do_old_sources() 10 0.09742 0.1004 0.1044 2.97% amrex::Copy() 193 0.07633 0.08367 0.09859 2.81% Amr::FinalizeInit() 1 0.02664 0.05523 0.09767 2.78% Castro::estTimeStep() 21 0.02349 0.0558 0.09708 2.76% Castro::initialize_advance() 10 0.07646 0.08027 0.08977 2.56% FabArray::setVal() 143 0.07099 0.07806 0.08908 2.54% Castro::computeInitialDt() 2 0.002159 0.03079 0.07336 2.09% Castro::do_new_sources() 10 0.06228 0.06601 0.07012 2.00% Castro::computeTemp() 63 0.06515 0.06768 0.06975 1.99% FabArray::ParallelCopy_finish() 41 0.04995 0.05724 0.06643 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04624 0.04798 0.04945 1.41% Castro::reset_internal_energy(Fab) 1008 0.04597 0.0477 0.04917 1.40% FabArray::ParallelCopy_nowait() 41 0.04284 0.04379 0.0455 1.30% Castro::normalize_species() 62 0.04068 0.04165 0.04381 1.25% StateDataPhysBCFunct::() 41 0.0287 0.03244 0.03632 1.03% StateData::FillBoundary(geom) 41 0.0286 0.03232 0.0362 1.03% Castro::construct_new_source() 50 0.03015 0.03172 0.03335 0.95% Gravity::interpolate_monopole_grav() 21 0.02763 0.02917 0.02984 0.85% Castro::construct_new_gravity_source() 10 0.02373 0.02511 0.02646 0.75% Amr::writePlotFile() 2 0.02419 0.02438 0.0246 0.70% Castro::post_init() 1 0.0238 0.02402 0.02423 0.69% Castro::finalize_do_advance() 10 0.0124 0.01704 0.02122 0.60% Castro::post_timestep() 10 0.01514 0.01569 0.01626 0.46% VisMF::Write(FabArray) 2 0.01205 0.01272 0.01518 0.43% Castro::check_for_nan() 20 0.01003 0.01185 0.01476 0.42% MultiFab::contains_nan() 20 0.01 0.01182 0.01474 0.42% Castro::apply_source_to_state() 20 0.01234 0.01374 0.01453 0.41% FabArray::Saxpy() 20 0.01229 0.0137 0.01447 0.41% Castro::Castro() 1 0.01011 0.01123 0.01436 0.41% FabArray::setDomainBndry() 41 0.007339 0.009996 0.01114 0.32% Castro::construct_old_source() 50 0.009717 0.01062 0.01112 0.32% Castro::construct_old_gravity_source() 10 0.009665 0.01055 0.01104 0.31% Castro::initMFs() 1 0.006069 0.007129 0.01026 0.29% Castro::computeNewDt() 9 0.00923 0.009235 0.009241 0.26% AmrLevel::AmrLevel(dm) 1 0.005094 0.005789 0.00786 0.22% StateData::define() 4 0.005054 0.005761 0.007833 0.22% Castro::enforce_min_density() 62 0.005717 0.006125 0.006498 0.19% Castro::swap_state_time_levels() 10 0.003278 0.004301 0.004491 0.13% Castro::finalize_advance() 10 0.003262 0.003487 0.003801 0.11% Castro::buildMetrics() 1 0.001541 0.001788 0.00245 0.07% Castro::post_regrid() 1 0.001462 0.001549 0.001672 0.05% Amr::InitAmr() 1 0.0002771 0.0003496 0.0005142 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.281e-05 0.0001869 0.0002671 0.01% DistributionMapping::LeastUsedCPUs() 1 7.226e-06 0.0001813 0.000259 0.01% FabArrayBase::getCPC() 41 7.01e-05 8.25e-05 9.991e-05 0.00% Castro::enforce_consistent_e() 1 7.516e-05 8.534e-05 9.772e-05 0.00% Amr::writeSmallPlotFile() 1 3.039e-05 4.452e-05 6.087e-05 0.00% Castro::enforce_speed_limit() 62 2.603e-05 2.924e-05 3.384e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.676e-05 3.185e-05 0.00% Amr::initSubcycle() 1 9.816e-06 1.225e-05 1.898e-05 0.00% Gravity::set_mass_offset() 10 7.676e-06 9.925e-06 1.239e-05 0.00% Gravity::swapTimeLevels() 10 8.117e-06 1.044e-05 1.184e-05 0.00% Castro::create_source_corrector() 10 6.828e-06 8.53e-06 1.107e-05 0.00% Castro::FluxRegCrseInit 10 5.179e-06 7.203e-06 8.506e-06 0.00% Castro::retry_advance_ctu() 10 5.948e-06 6.94e-06 7.633e-06 0.00% Castro::FluxRegFineAdd() 10 2.108e-06 2.394e-06 3.247e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.087e-06 1.448e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 34 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-22-gbe6c6415467d) finalized