Initializing AMReX (23.10-22-gbe6c6415467d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-22-gbe6c6415467d) initialized Starting run at 05:23:47 UTC on 2023-10-30. Successfully read inputs file ... Castro git describe: 23.10-46-g13f63f26e AMReX git describe: 23.10-22-gbe6c64154 Microphysics git describe: 23.10-27-g04ba99af reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016205758 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35495531 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354713075 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341346201 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.345589487 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348739113 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.359632844 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310224202 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30958703 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.3097413 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310126348 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009791844 seconds Ending run at 05:23:51 UTC on 2023-10-30. Run time = 3.541912971 Run time without initialization = 3.359170887 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2190 2.3685 2.4266 68.51% Gravity::make_radial_gravity() 21 0.2935 0.2993 0.3196 9.02% check_for_negative_density() 10 0.01387 0.07178 0.2281 6.44% Castro::initData() 1 0.05027 0.08544 0.1196 3.38% Castro::estTimeStep() 21 0.02793 0.06684 0.105 2.96% amrex::Copy() 193 0.07005 0.08422 0.09436 2.66% FabArray::ParallelCopy_finish() 41 0.03527 0.06304 0.08998 2.54% FabArray::setVal() 143 0.06618 0.07538 0.08907 2.51% Castro::reset_internal_energy(Fab) 1008 0.0475 0.04894 0.05148 1.45% FabArray::ParallelCopy_nowait() 41 0.03654 0.04312 0.04543 1.28% Castro::normalize_species() 62 0.04142 0.04247 0.04417 1.25% FillPatchIterator::Initialize 41 0.02636 0.03686 0.04161 1.17% StateData::FillBoundary(geom) 41 0.02797 0.03223 0.03471 0.98% Gravity::interpolate_monopole_grav() 21 0.02824 0.02965 0.03046 0.86% Castro::construct_new_gravity_source() 10 0.02295 0.02433 0.02653 0.75% Castro::initialize_do_advance() 10 0.01168 0.01967 0.02501 0.71% Castro::computeTemp() 63 0.01937 0.02019 0.02164 0.61% VisMF::Write(FabArray) 2 0.01204 0.01261 0.01541 0.44% Castro::initialize_advance() 10 0.009633 0.01195 0.01457 0.41% FabArray::Saxpy() 20 0.01218 0.01319 0.0141 0.40% FabArray::setDomainBndry() 41 0.006529 0.01071 0.01309 0.37% MultiFab::contains_nan() 20 0.01048 0.01104 0.01151 0.32% Amr::writePlotFile() 2 0.007957 0.01049 0.01117 0.32% Castro::construct_old_gravity_source() 10 0.006927 0.009626 0.01055 0.30% Castro::initMFs() 1 0.006202 0.006492 0.008153 0.23% Amr::coarseTimeStep() 10 0.001221 0.005501 0.00775 0.22% Castro::construct_new_source() 50 0.005758 0.006504 0.0069 0.19% Castro::enforce_min_density() 62 0.005822 0.00609 0.006551 0.18% StateData::define() 4 0.005178 0.005322 0.005774 0.16% Castro::swap_state_time_levels() 10 0.00368 0.004511 0.004681 0.13% Gravity::get_new_grav_vector() 11 0.00267 0.003725 0.00432 0.12% main() 1 0.003433 0.003851 0.004073 0.12% Gravity::get_old_grav_vector() 10 0.001417 0.002112 0.002398 0.07% Castro::buildMetrics() 1 0.001439 0.001488 0.001664 0.05% Castro::finalize_do_advance() 10 0.0004543 0.001055 0.001285 0.04% AmrLevel::FillPatch() 41 0.0007274 0.0008149 0.001012 0.03% Amr::InitAmr() 1 0.0002528 0.0002865 0.0003926 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002699 0.0003023 0.0003684 0.01% Amr::timeStep() 10 0.0001459 0.0002008 0.0003542 0.01% Castro::do_advance_ctu() 10 0.0001231 0.0001516 0.0001744 0.00% Castro::clean_state() 62 0.0001407 0.0001542 0.0001711 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001051 0.0001248 0.0001396 0.00% DistributionMapping::LeastUsedCPUs() 1 6.651e-06 0.0001101 0.0001291 0.00% StateDataPhysBCFunct::() 41 8.66e-05 9.912e-05 0.0001175 0.00% Castro::finalize_advance() 10 7.699e-05 9.371e-05 0.0001081 0.00% Castro::enforce_consistent_e() 1 7.98e-05 9.047e-05 0.0001053 0.00% Castro::do_old_sources() 10 7.18e-05 9.196e-05 0.0001022 0.00% Castro::do_new_sources() 10 5.536e-05 7.138e-05 9.465e-05 0.00% Castro::Castro() 1 5.889e-05 7.974e-05 9.046e-05 0.00% FabArray::ParallelCopy() 41 7.107e-05 7.87e-05 8.812e-05 0.00% Amr::FinalizeInit() 1 3.796e-06 1.508e-05 8.721e-05 0.00% Castro::construct_old_source() 50 5.154e-05 7.108e-05 7.939e-05 0.00% FillPatchSingleLevel 41 6.677e-05 7.2e-05 7.56e-05 0.00% Amr::writeSmallPlotFile() 1 3.271e-05 4.637e-05 6.653e-05 0.00% FabArrayBase::getCPC() 41 4.293e-05 5.218e-05 6.347e-05 0.00% Castro::subcycle_advance_ctu() 10 4.046e-05 4.974e-05 5.87e-05 0.00% Castro::apply_source_to_state() 20 4.026e-05 4.861e-05 5.797e-05 0.00% Castro::advance() 10 4.176e-05 4.925e-05 5.743e-05 0.00% Castro::construct_old_gravity() 10 3.04e-05 3.605e-05 4.241e-05 0.00% Amr::defBaseLevel() 1 2.44e-05 3.243e-05 4.116e-05 0.00% FabArrayBase::CPC::define() 2 2.288e-05 2.861e-05 3.889e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.175e-05 2.231e-05 3.858e-05 0.00% Castro::construct_new_gravity() 10 3.182e-05 3.397e-05 3.819e-05 0.00% Castro::post_timestep() 10 1.278e-05 1.921e-05 3.109e-05 0.00% Castro::enforce_speed_limit() 62 2.526e-05 2.886e-05 3.055e-05 0.00% Castro::expand_state() 10 1.912e-05 2.48e-05 2.987e-05 0.00% Castro::retry_advance_ctu() 10 6.459e-06 1.151e-05 2.891e-05 0.00% Castro::check_for_nan() 20 2.143e-05 2.323e-05 2.502e-05 0.00% Gravity::set_mass_offset() 10 8.935e-06 1.178e-05 2.152e-05 0.00% Castro::computeNewDt() 9 7.728e-06 1.034e-05 1.979e-05 0.00% Castro::post_init() 1 1.299e-05 1.452e-05 1.738e-05 0.00% Castro::FluxRegCrseInit 10 7.077e-06 9.368e-06 1.351e-05 0.00% Amr::initSubcycle() 1 9.76e-06 1.023e-05 1.124e-05 0.00% Gravity::swapTimeLevels() 10 8.576e-06 9.566e-06 1.054e-05 0.00% Castro::create_source_corrector() 10 7.705e-06 8.577e-06 9.817e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.839e-06 5.396e-06 7.219e-06 0.00% Castro::computeInitialDt() 2 3.607e-06 4.107e-06 5.489e-06 0.00% Amr::InitializeInit() 1 1.692e-06 2.284e-06 4.59e-06 0.00% Castro::post_regrid() 1 2.038e-06 3.202e-06 4.497e-06 0.00% Amr::init() 1 1.803e-06 2.535e-06 3.056e-06 0.00% Castro::FluxRegFineAdd() 10 2.039e-06 2.411e-06 2.907e-06 0.00% Amr::initialInit() 1 1.288e-06 1.898e-06 2.486e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.083e-06 1.282e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 94.45% Amr::timeStep() 10 3.324 3.327 3.331 94.04% Castro::advance() 10 3.308 3.309 3.311 93.49% Castro::subcycle_advance_ctu() 10 3.217 3.228 3.235 91.34% Castro::do_advance_ctu() 10 3.217 3.228 3.235 91.34% Castro::construct_ctu_hydro_source() 10 2.458 2.461 2.468 69.68% Gravity::make_radial_gravity() 21 0.3125 0.3173 0.3335 9.41% AmrLevel::FillPatch() 41 0.1947 0.2189 0.2372 6.70% check_for_negative_density() 10 0.01387 0.07178 0.2281 6.44% Gravity::get_new_grav_vector() 11 0.2114 0.2131 0.2139 6.04% Castro::construct_old_gravity() 10 0.1887 0.1922 0.2054 5.80% Gravity::get_old_grav_vector() 10 0.1881 0.1913 0.2041 5.76% FillPatchIterator::Initialize 41 0.1619 0.1864 0.2037 5.75% Castro::initialize_do_advance() 10 0.1655 0.1834 0.1939 5.47% Castro::construct_new_gravity() 10 0.1894 0.1904 0.1907 5.39% Amr::init() 1 0.1822 0.1823 0.1823 5.15% Amr::initialInit() 1 0.1657 0.1661 0.1663 4.70% FillPatchIterator::FillFromLevel0() 41 0.1101 0.1388 0.1563 4.41% FillPatchSingleLevel 41 0.11 0.1387 0.1562 4.41% Amr::InitializeInit() 1 0.07019 0.1057 0.1398 3.95% Amr::defBaseLevel() 1 0.07018 0.1057 0.1398 3.95% Castro::expand_state() 10 0.111 0.1265 0.1384 3.91% FabArray::ParallelCopy() 41 0.07843 0.1063 0.1267 3.58% Castro::initData() 1 0.05405 0.08948 0.1239 3.50% Castro::clean_state() 62 0.1143 0.1172 0.1226 3.46% Castro::estTimeStep() 21 0.02793 0.06684 0.105 2.96% Castro::do_old_sources() 10 0.09522 0.1004 0.1048 2.96% Amr::FinalizeInit() 1 0.02619 0.06036 0.09552 2.70% amrex::Copy() 193 0.07005 0.08422 0.09436 2.66% FabArray::ParallelCopy_finish() 41 0.03527 0.06304 0.08998 2.54% FabArray::setVal() 143 0.06618 0.07538 0.08907 2.51% Castro::initialize_advance() 10 0.07016 0.07738 0.08838 2.50% Castro::computeTemp() 63 0.06763 0.06943 0.07341 2.07% Castro::computeInitialDt() 2 0.002791 0.03682 0.07224 2.04% Castro::do_new_sources() 10 0.06155 0.0646 0.0696 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04777 0.04924 0.05177 1.46% Castro::reset_internal_energy(Fab) 1008 0.0475 0.04894 0.05148 1.45% FabArray::ParallelCopy_nowait() 41 0.03665 0.0432 0.04551 1.29% Castro::normalize_species() 62 0.04142 0.04247 0.04417 1.25% StateDataPhysBCFunct::() 41 0.02807 0.03233 0.03483 0.98% StateData::FillBoundary(geom) 41 0.02797 0.03223 0.03471 0.98% Castro::construct_new_source() 50 0.02934 0.03084 0.03305 0.93% Gravity::interpolate_monopole_grav() 21 0.02824 0.02965 0.03046 0.86% Castro::construct_new_gravity_source() 10 0.02295 0.02433 0.02653 0.75% Amr::writePlotFile() 2 0.02581 0.02607 0.02634 0.74% Castro::post_init() 1 0.02328 0.02365 0.02385 0.67% Castro::finalize_do_advance() 10 0.01467 0.01945 0.02282 0.64% Castro::post_timestep() 10 0.01552 0.01687 0.01937 0.55% VisMF::Write(FabArray) 2 0.01204 0.01261 0.01541 0.44% Castro::apply_source_to_state() 20 0.01224 0.01324 0.01415 0.40% FabArray::Saxpy() 20 0.01218 0.01319 0.0141 0.40% FabArray::setDomainBndry() 41 0.006529 0.01071 0.01309 0.37% Castro::Castro() 1 0.01047 0.01075 0.01174 0.33% Castro::computeNewDt() 9 0.01153 0.01164 0.01166 0.33% Castro::check_for_nan() 20 0.01051 0.01106 0.01153 0.33% MultiFab::contains_nan() 20 0.01048 0.01104 0.01151 0.32% Castro::construct_old_source() 50 0.006979 0.009697 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006927 0.009626 0.01055 0.30% Castro::initMFs() 1 0.006202 0.006492 0.008153 0.23% Castro::enforce_min_density() 62 0.005822 0.00609 0.006551 0.18% AmrLevel::AmrLevel(dm) 1 0.005191 0.005345 0.005813 0.16% StateData::define() 4 0.005178 0.005322 0.005774 0.16% Castro::finalize_advance() 10 0.002944 0.003943 0.005521 0.16% Castro::swap_state_time_levels() 10 0.00368 0.004511 0.004681 0.13% Castro::buildMetrics() 1 0.001565 0.001613 0.001818 0.05% Castro::post_regrid() 1 0.001512 0.001644 0.001772 0.05% Amr::InitAmr() 1 0.0002626 0.0002968 0.0004026 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.179e-05 0.0001166 0.0001374 0.00% DistributionMapping::LeastUsedCPUs() 1 6.651e-06 0.0001101 0.0001291 0.00% Castro::enforce_consistent_e() 1 7.98e-05 9.047e-05 0.0001053 0.00% FabArrayBase::getCPC() 41 6.9e-05 8.079e-05 0.0001024 0.00% Amr::writeSmallPlotFile() 1 3.271e-05 4.637e-05 6.653e-05 0.00% FabArrayBase::CPC::define() 2 2.288e-05 2.861e-05 3.889e-05 0.00% Castro::enforce_speed_limit() 62 2.526e-05 2.886e-05 3.055e-05 0.00% Castro::retry_advance_ctu() 10 6.459e-06 1.151e-05 2.891e-05 0.00% Gravity::set_mass_offset() 10 8.935e-06 1.178e-05 2.152e-05 0.00% Castro::FluxRegCrseInit 10 7.077e-06 9.368e-06 1.351e-05 0.00% Amr::initSubcycle() 1 9.76e-06 1.023e-05 1.124e-05 0.00% Gravity::swapTimeLevels() 10 8.576e-06 9.566e-06 1.054e-05 0.00% Castro::create_source_corrector() 10 7.705e-06 8.577e-06 9.817e-06 0.00% Castro::FluxRegFineAdd() 10 2.039e-06 2.411e-06 2.907e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.083e-06 1.282e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-22-gbe6c6415467d) finalized