Initializing AMReX (23.10-22-gbe6c6415467d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-22-gbe6c6415467d) initialized Starting run at 05:23:02 UTC on 2023-10-31. Successfully read inputs file ... Castro git describe: 23.10-47-gebd2255bc AMReX git describe: 23.10-22-gbe6c64154 Microphysics git describe: 23.10-28-g153fbf87 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014797504 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367425543 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.41212477 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.417141867 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.389789484 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.420145105 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.403931187 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.398322367 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.392888042 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.394015789 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.419024811 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.015867229 seconds Ending run at 05:23:06 UTC on 2023-10-31. Run time = 4.22249744 Run time without initialization = 4.038649843 Average number of zones advanced per microsecond: 0.649 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.222 ... 4.222 ... 4.223 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5084 2.7265 2.9344 69.49% check_for_negative_density() 10 0.04834 0.2627 0.4859 11.51% Gravity::make_radial_gravity() 21 0.2916 0.3133 0.3315 7.85% Castro::initData() 1 0.04754 0.0852 0.1218 2.88% amrex::Copy() 193 0.09883 0.1081 0.1164 2.76% Castro::estTimeStep() 21 0.02512 0.07162 0.1161 2.75% FabArray::setVal() 143 0.07965 0.0889 0.09637 2.28% FabArray::ParallelCopy_finish() 41 0.05411 0.05932 0.06841 1.62% FabArray::ParallelCopy_nowait() 41 0.05619 0.05809 0.06086 1.44% FillPatchIterator::Initialize 41 0.04535 0.05045 0.05791 1.37% Castro::reset_internal_energy(Fab) 1008 0.04764 0.05083 0.05437 1.29% StateData::FillBoundary(geom) 41 0.03401 0.03893 0.04797 1.14% Castro::normalize_species() 62 0.04222 0.04317 0.04454 1.05% Castro::construct_new_gravity_source() 10 0.02601 0.02975 0.03554 0.84% Gravity::interpolate_monopole_grav() 21 0.02803 0.02946 0.03003 0.71% Castro::initialize_do_advance() 10 0.02292 0.02541 0.02694 0.64% Castro::computeTemp() 63 0.01894 0.02095 0.02231 0.53% FabArray::setDomainBndry() 41 0.0141 0.01789 0.0202 0.48% FabArray::Saxpy() 20 0.0164 0.0175 0.01892 0.45% VisMF::Write(FabArray) 2 0.01235 0.01348 0.0172 0.41% MultiFab::contains_nan() 20 0.01272 0.01452 0.01698 0.40% Amr::writePlotFile() 2 0.01014 0.01374 0.01543 0.37% Castro::initialize_advance() 10 0.009044 0.01353 0.01538 0.36% Castro::construct_old_gravity_source() 10 0.01191 0.01397 0.01452 0.34% Castro::construct_new_source() 50 0.006961 0.007483 0.008019 0.19% Castro::enforce_min_density() 62 0.006614 0.007088 0.007821 0.19% main() 1 0.006836 0.006969 0.007137 0.17% Castro::initMFs() 1 0.006154 0.006287 0.006665 0.16% Gravity::get_new_grav_vector() 11 0.003726 0.004849 0.00583 0.14% StateData::define() 4 0.005087 0.005157 0.005446 0.13% Amr::coarseTimeStep() 10 0.001163 0.003206 0.004911 0.12% Castro::swap_state_time_levels() 10 0.00268 0.004151 0.004382 0.10% Gravity::get_old_grav_vector() 10 0.002702 0.002982 0.003199 0.08% Castro::finalize_do_advance() 10 0.001163 0.001442 0.001798 0.04% Castro::buildMetrics() 1 0.001416 0.001448 0.001554 0.04% AmrLevel::FillPatch() 41 0.0007668 0.001075 0.001248 0.03% Amr::InitAmr() 1 0.0002644 0.0002955 0.0003995 0.01% Amr::timeStep() 10 0.0001528 0.0002332 0.000354 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002906 0.0003074 0.0003288 0.01% Castro::clean_state() 62 0.0001555 0.0001774 0.0002117 0.01% Castro::do_advance_ctu() 10 0.0001282 0.0001592 0.0001864 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001309 0.0001535 0.0001793 0.00% StateDataPhysBCFunct::() 41 8.53e-05 0.0001148 0.0001724 0.00% Castro::finalize_advance() 10 7.542e-05 0.0001076 0.0001434 0.00% Castro::do_old_sources() 10 7.797e-05 0.0001109 0.0001387 0.00% DistributionMapping::LeastUsedCPUs() 1 6.688e-06 9.899e-05 0.0001132 0.00% FabArray::ParallelCopy() 41 8.028e-05 9.328e-05 0.0001109 0.00% Castro::Castro() 1 6.058e-05 8.354e-05 0.0001084 0.00% Castro::construct_old_source() 50 5.04e-05 8.537e-05 0.0001049 0.00% FillPatchSingleLevel 41 7.188e-05 8.684e-05 9.779e-05 0.00% Castro::enforce_consistent_e() 1 7.755e-05 8.385e-05 9.669e-05 0.00% Amr::FinalizeInit() 1 3.873e-06 1.629e-05 8.7e-05 0.00% Castro::do_new_sources() 10 6.101e-05 7.571e-05 8.45e-05 0.00% FabArrayBase::getCPC() 41 4.322e-05 6.034e-05 7.726e-05 0.00% Castro::subcycle_advance_ctu() 10 4.657e-05 6.296e-05 7.24e-05 0.00% Castro::apply_source_to_state() 20 3.444e-05 5.235e-05 6.809e-05 0.00% Amr::writeSmallPlotFile() 1 3.218e-05 4.276e-05 6.594e-05 0.00% Castro::advance() 10 4.183e-05 5.354e-05 6.482e-05 0.00% Castro::construct_old_gravity() 10 3.4e-05 4.432e-05 5.216e-05 0.00% Castro::construct_new_gravity() 10 3.083e-05 3.882e-05 5.112e-05 0.00% Amr::defBaseLevel() 1 2.677e-05 3.924e-05 4.777e-05 0.00% Castro::expand_state() 10 2.714e-05 3.581e-05 4.541e-05 0.00% Castro::enforce_speed_limit() 62 2.525e-05 3.342e-05 4.477e-05 0.00% FabArrayBase::CPC::define() 2 2.054e-05 2.618e-05 3.136e-05 0.00% Castro::check_for_nan() 20 2.266e-05 2.687e-05 3.115e-05 0.00% Castro::post_timestep() 10 1.319e-05 1.8e-05 2.834e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.208e-05 1.833e-05 2.784e-05 0.00% Castro::post_init() 1 1.406e-05 1.67e-05 2.452e-05 0.00% Gravity::set_mass_offset() 10 8.822e-06 1.188e-05 1.726e-05 0.00% Gravity::swapTimeLevels() 10 7.005e-06 1.188e-05 1.699e-05 0.00% Castro::create_source_corrector() 10 7.178e-06 1.082e-05 1.27e-05 0.00% Amr::initSubcycle() 1 9.63e-06 1.018e-05 1.077e-05 0.00% Castro::computeNewDt() 9 7.394e-06 8.366e-06 1.05e-05 0.00% Castro::FluxRegCrseInit 10 6.219e-06 7.704e-06 8.706e-06 0.00% Castro::retry_advance_ctu() 10 5.611e-06 7.234e-06 7.997e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.856e-06 5.84e-06 7.235e-06 0.00% Castro::computeInitialDt() 2 3.173e-06 3.904e-06 5.288e-06 0.00% Amr::InitializeInit() 1 1.808e-06 2.422e-06 4.763e-06 0.00% Castro::post_regrid() 1 2.368e-06 3.549e-06 4.506e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.586e-06 3.362e-06 0.00% Amr::init() 1 1.826e-06 2.28e-06 2.708e-06 0.00% Amr::initialInit() 1 1.353e-06 1.668e-06 1.871e-06 0.00% DistributionMapping::Distribute() 1 8.58e-07 9.879e-07 1.125e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.222 4.222 4.223 100.00% Amr::coarseTimeStep() 10 4.016 4.016 4.016 95.10% Amr::timeStep() 10 4 4.002 4.004 94.81% Castro::advance() 10 3.985 3.986 3.986 94.41% Castro::subcycle_advance_ctu() 10 3.889 3.893 3.906 92.51% Castro::do_advance_ctu() 10 3.889 3.893 3.906 92.51% Castro::construct_ctu_hydro_source() 10 3.006 3.011 3.017 71.45% check_for_negative_density() 10 0.04834 0.2627 0.4859 11.51% Gravity::make_radial_gravity() 21 0.3136 0.3372 0.3569 8.45% AmrLevel::FillPatch() 41 0.2531 0.2692 0.2869 6.79% Castro::initialize_do_advance() 10 0.2083 0.2236 0.2402 5.69% FillPatchIterator::Initialize 41 0.2128 0.2252 0.2398 5.68% Castro::construct_old_gravity() 10 0.1935 0.2135 0.2283 5.41% Gravity::get_old_grav_vector() 10 0.1926 0.2127 0.2275 5.39% Gravity::get_new_grav_vector() 11 0.221 0.2232 0.2251 5.33% Castro::construct_new_gravity() 10 0.1993 0.2007 0.2017 4.78% Amr::init() 1 0.1833 0.1834 0.1834 4.34% Castro::expand_state() 10 0.1388 0.1538 0.1724 4.08% Amr::initialInit() 1 0.1683 0.1686 0.1687 4.00% FillPatchIterator::FillFromLevel0() 41 0.148 0.1569 0.1644 3.89% FillPatchSingleLevel 41 0.1478 0.1567 0.1642 3.89% Amr::InitializeInit() 1 0.06791 0.1053 0.1422 3.37% Amr::defBaseLevel() 1 0.0679 0.1053 0.1422 3.37% Castro::do_old_sources() 10 0.121 0.1259 0.1298 3.07% Castro::clean_state() 62 0.1162 0.1217 0.1278 3.03% Castro::initData() 1 0.05094 0.08915 0.1257 2.98% FabArray::ParallelCopy() 41 0.1127 0.1176 0.1251 2.96% amrex::Copy() 193 0.09883 0.1081 0.1164 2.76% Castro::estTimeStep() 21 0.02512 0.07162 0.1161 2.75% Amr::FinalizeInit() 1 0.02635 0.06329 0.1007 2.39% FabArray::setVal() 143 0.07965 0.0889 0.09637 2.28% Castro::initialize_advance() 10 0.07506 0.08773 0.09248 2.19% Castro::do_new_sources() 10 0.0674 0.07417 0.08476 2.01% Castro::computeTemp() 63 0.06701 0.07209 0.07687 1.82% Castro::computeInitialDt() 2 0.002185 0.0391 0.0765 1.81% FabArray::ParallelCopy_finish() 41 0.05411 0.05932 0.06841 1.62% FabArray::ParallelCopy_nowait() 41 0.05629 0.05817 0.06093 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04793 0.05114 0.05468 1.30% Castro::reset_internal_energy(Fab) 1008 0.04764 0.05083 0.05437 1.29% StateDataPhysBCFunct::() 41 0.03418 0.03905 0.04807 1.14% StateData::FillBoundary(geom) 41 0.03401 0.03893 0.04797 1.14% Castro::normalize_species() 62 0.04222 0.04317 0.04454 1.05% Castro::construct_new_source() 50 0.03331 0.03723 0.04352 1.03% Castro::construct_new_gravity_source() 10 0.02601 0.02975 0.03554 0.84% Castro::finalize_do_advance() 10 0.01237 0.02423 0.03216 0.76% Amr::writePlotFile() 2 0.03065 0.03078 0.03095 0.73% Gravity::interpolate_monopole_grav() 21 0.02803 0.02946 0.03003 0.71% Castro::post_init() 1 0.02352 0.02379 0.02396 0.57% FabArray::setDomainBndry() 41 0.0141 0.01789 0.0202 0.48% Castro::apply_source_to_state() 20 0.01644 0.01755 0.01899 0.45% FabArray::Saxpy() 20 0.0164 0.0175 0.01892 0.45% VisMF::Write(FabArray) 2 0.01235 0.01348 0.0172 0.41% Castro::post_timestep() 10 0.01486 0.0158 0.01711 0.41% Castro::check_for_nan() 20 0.01275 0.01454 0.017 0.40% MultiFab::contains_nan() 20 0.01272 0.01452 0.01698 0.40% Castro::construct_old_source() 50 0.01196 0.01406 0.01462 0.35% Castro::construct_old_gravity_source() 10 0.01191 0.01397 0.01452 0.34% Castro::Castro() 1 0.0106 0.01083 0.01135 0.27% Castro::computeNewDt() 9 0.009736 0.009743 0.009749 0.23% Castro::enforce_min_density() 62 0.006614 0.007088 0.007821 0.19% Castro::initMFs() 1 0.006154 0.006287 0.006665 0.16% AmrLevel::AmrLevel(dm) 1 0.005105 0.005175 0.005461 0.13% StateData::define() 4 0.005087 0.005157 0.005446 0.13% Castro::finalize_advance() 10 0.003877 0.004461 0.005089 0.12% Castro::swap_state_time_levels() 10 0.00268 0.004151 0.004382 0.10% Castro::buildMetrics() 1 0.001537 0.001586 0.001721 0.04% Castro::post_regrid() 1 0.001466 0.001548 0.001654 0.04% Amr::InitAmr() 1 0.0002747 0.0003057 0.0004096 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.145e-05 0.0001058 0.0001211 0.00% DistributionMapping::LeastUsedCPUs() 1 6.688e-06 9.899e-05 0.0001132 0.00% FabArrayBase::getCPC() 41 6.673e-05 8.652e-05 0.0001043 0.00% Castro::enforce_consistent_e() 1 7.755e-05 8.385e-05 9.669e-05 0.00% Amr::writeSmallPlotFile() 1 3.218e-05 4.276e-05 6.594e-05 0.00% Castro::enforce_speed_limit() 62 2.525e-05 3.342e-05 4.477e-05 0.00% FabArrayBase::CPC::define() 2 2.054e-05 2.618e-05 3.136e-05 0.00% Gravity::set_mass_offset() 10 8.822e-06 1.188e-05 1.726e-05 0.00% Gravity::swapTimeLevels() 10 7.005e-06 1.188e-05 1.699e-05 0.00% Castro::create_source_corrector() 10 7.178e-06 1.082e-05 1.27e-05 0.00% Amr::initSubcycle() 1 9.63e-06 1.018e-05 1.077e-05 0.00% Castro::FluxRegCrseInit 10 6.219e-06 7.704e-06 8.706e-06 0.00% Castro::retry_advance_ctu() 10 5.611e-06 7.234e-06 7.997e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.586e-06 3.362e-06 0.00% DistributionMapping::Distribute() 1 8.58e-07 9.879e-07 1.125e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 26 B 29 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-22-gbe6c6415467d) finalized