Initializing AMReX (23.10-23-g601cc4ee80e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.10-23-g601cc4ee80e0) initialized Starting run at 05:20:17 UTC on 2023-11-01. Successfully read inputs file ... Castro git describe: 23.10-47-gebd2255bc AMReX git describe: 23.10-23-g601cc4ee8 Microphysics git describe: 23.10-28-g153fbf87 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017024316 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352716599 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.333925283 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.349616078 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32967843 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330125175 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358516688 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314877486 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307918383 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30815861 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30824378 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010148291 seconds Ending run at 05:20:20 UTC on 2023-11-01. Run time = 3.496506844 Run time without initialization = 3.309326108 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.495 ... 3.496 ... 3.497 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3128 2.3503 2.4099 68.92% Gravity::make_radial_gravity() 21 0.2871 0.2947 0.3096 8.85% Castro::initData() 1 0.04832 0.08901 0.1216 3.48% check_for_negative_density() 10 0.01443 0.07881 0.12 3.43% Castro::estTimeStep() 21 0.02283 0.05914 0.1009 2.89% FabArray::ParallelCopy_finish() 41 0.03797 0.06169 0.09974 2.85% amrex::Copy() 193 0.06442 0.08209 0.09803 2.80% FabArray::setVal() 143 0.06291 0.07202 0.08085 2.31% Castro::reset_internal_energy(Fab) 1008 0.04544 0.04753 0.04845 1.39% FabArray::ParallelCopy_nowait() 41 0.03547 0.04107 0.04619 1.32% Castro::normalize_species() 62 0.0408 0.0417 0.04234 1.21% FillPatchIterator::Initialize 41 0.02716 0.03195 0.03571 1.02% StateData::FillBoundary(geom) 41 0.02864 0.03129 0.03511 1.00% Gravity::interpolate_monopole_grav() 21 0.02821 0.02996 0.03247 0.93% Castro::construct_new_gravity_source() 10 0.02158 0.02428 0.0263 0.75% Castro::computeTemp() 63 0.01754 0.01926 0.02058 0.59% Castro::initialize_do_advance() 10 0.01166 0.01654 0.01765 0.50% VisMF::Write(FabArray) 2 0.0124 0.01344 0.01588 0.45% Castro::initialize_advance() 10 0.009917 0.01252 0.01579 0.45% FabArray::Saxpy() 20 0.0105 0.01287 0.01423 0.41% FabArray::setDomainBndry() 41 0.006939 0.009857 0.0125 0.36% MultiFab::contains_nan() 20 0.009682 0.0106 0.01204 0.34% Castro::construct_old_gravity_source() 10 0.006471 0.009423 0.01044 0.30% Amr::writePlotFile() 2 0.008632 0.009342 0.01009 0.29% Castro::initMFs() 1 0.006312 0.006852 0.00771 0.22% Castro::construct_new_source() 50 0.005367 0.006331 0.006678 0.19% Castro::enforce_min_density() 62 0.005698 0.006036 0.006478 0.19% StateData::define() 4 0.00513 0.005393 0.005809 0.17% main() 1 0.003274 0.004273 0.00471 0.13% Castro::swap_state_time_levels() 10 0.003163 0.004148 0.004402 0.13% Gravity::get_new_grav_vector() 11 0.002835 0.003627 0.004065 0.12% Amr::coarseTimeStep() 10 0.001201 0.00179 0.002535 0.07% Gravity::get_old_grav_vector() 10 0.001625 0.002012 0.002463 0.07% Castro::buildMetrics() 1 0.00148 0.001577 0.001727 0.05% Castro::finalize_do_advance() 10 0.0004769 0.001021 0.001291 0.04% AmrLevel::FillPatch() 41 0.0007601 0.0008677 0.001009 0.03% Amr::timeStep() 10 0.0001656 0.0002317 0.0004746 0.01% Amr::InitAmr() 1 0.000271 0.0003016 0.0004526 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002688 0.0002853 0.0003085 0.01% DistributionMapping::LeastUsedCPUs() 1 6.918e-06 0.0001617 0.0001951 0.01% Castro::clean_state() 62 0.0001419 0.0001547 0.0001809 0.01% Castro::do_advance_ctu() 10 0.0001376 0.0001526 0.0001782 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001117 0.000126 0.0001398 0.00% Castro::finalize_advance() 10 9.2e-05 0.0001059 0.0001241 0.00% StateDataPhysBCFunct::() 41 9.794e-05 0.0001041 0.000122 0.00% Castro::enforce_consistent_e() 1 7.766e-05 9.068e-05 0.0001106 0.00% Castro::do_old_sources() 10 8.071e-05 9.393e-05 0.0001055 0.00% FabArray::ParallelCopy() 41 7.89e-05 8.67e-05 9.859e-05 0.00% Castro::Castro() 1 5.873e-05 8.046e-05 9.688e-05 0.00% Castro::do_new_sources() 10 5.882e-05 7.024e-05 8.955e-05 0.00% Castro::construct_old_source() 50 5.774e-05 7.165e-05 8.349e-05 0.00% Amr::writeSmallPlotFile() 1 3.194e-05 5.036e-05 8.138e-05 0.00% FillPatchSingleLevel 41 6.931e-05 7.536e-05 8.084e-05 0.00% Amr::FinalizeInit() 1 4.049e-06 1.291e-05 6.936e-05 0.00% FabArrayBase::getCPC() 41 4.597e-05 5.59e-05 6.885e-05 0.00% Castro::subcycle_advance_ctu() 10 4.166e-05 5.113e-05 6.129e-05 0.00% Castro::advance() 10 3.497e-05 5.043e-05 5.862e-05 0.00% Castro::apply_source_to_state() 20 4.202e-05 4.578e-05 5.205e-05 0.00% FabArrayBase::CPC::define() 2 2.498e-05 3.069e-05 5.027e-05 0.00% Castro::construct_new_gravity() 10 3.013e-05 3.531e-05 4.05e-05 0.00% Castro::construct_old_gravity() 10 3.206e-05 3.797e-05 4.024e-05 0.00% Castro::enforce_speed_limit() 62 2.52e-05 2.987e-05 3.646e-05 0.00% Amr::defBaseLevel() 1 2.541e-05 3.117e-05 3.539e-05 0.00% Castro::expand_state() 10 2.349e-05 2.6e-05 2.85e-05 0.00% Castro::check_for_nan() 20 2.114e-05 2.372e-05 2.542e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.584e-05 1.769e-05 1.927e-05 0.00% Gravity::swapTimeLevels() 10 7.732e-06 1.06e-05 1.863e-05 0.00% Castro::post_init() 1 1.353e-05 1.533e-05 1.816e-05 0.00% Castro::post_timestep() 10 1.287e-05 1.547e-05 1.736e-05 0.00% Castro::computeNewDt() 9 7.141e-06 1.005e-05 1.476e-05 0.00% Gravity::set_mass_offset() 10 9.102e-06 1.188e-05 1.372e-05 0.00% Castro::FluxRegCrseInit 10 5.639e-06 8.179e-06 1.365e-05 0.00% Amr::initSubcycle() 1 1.004e-05 1.085e-05 1.181e-05 0.00% Castro::create_source_corrector() 10 6.139e-06 8.657e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.485e-06 7.179e-06 8.593e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.234e-06 5.341e-06 6.884e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.757e-06 6.246e-06 0.00% Amr::init() 1 1.95e-06 3.163e-06 6.159e-06 0.00% Amr::InitializeInit() 1 1.815e-06 2.386e-06 5.499e-06 0.00% Castro::computeInitialDt() 2 2.989e-06 4.022e-06 5.302e-06 0.00% Castro::post_regrid() 1 1.75e-06 3.095e-06 4.654e-06 0.00% Castro::FluxRegFineAdd() 10 1.978e-06 2.261e-06 2.647e-06 0.00% Amr::initialInit() 1 1.357e-06 1.845e-06 2.44e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.495 3.496 3.497 100.00% Amr::coarseTimeStep() 10 3.295 3.295 3.295 94.22% Amr::timeStep() 10 3.282 3.282 3.283 93.89% Castro::advance() 10 3.266 3.267 3.267 93.43% Castro::subcycle_advance_ctu() 10 3.184 3.188 3.197 91.43% Castro::do_advance_ctu() 10 3.184 3.188 3.197 91.43% Castro::construct_ctu_hydro_source() 10 2.444 2.449 2.453 70.15% Gravity::make_radial_gravity() 21 0.3033 0.3112 0.3227 9.23% AmrLevel::FillPatch() 41 0.1845 0.208 0.225 6.44% Gravity::get_new_grav_vector() 11 0.2054 0.2094 0.2109 6.03% FillPatchIterator::Initialize 41 0.1543 0.1763 0.2012 5.75% Castro::construct_old_gravity() 10 0.1818 0.191 0.1989 5.69% Gravity::get_old_grav_vector() 10 0.1812 0.1903 0.1983 5.67% Amr::init() 1 0.1866 0.1867 0.1868 5.34% Castro::construct_new_gravity() 10 0.1822 0.1835 0.1857 5.31% Amr::initialInit() 1 0.1694 0.1713 0.1721 4.92% Castro::initialize_do_advance() 10 0.152 0.161 0.1672 4.78% FillPatchIterator::FillFromLevel0() 41 0.1187 0.1345 0.1663 4.76% FillPatchSingleLevel 41 0.1186 0.1344 0.1661 4.75% Amr::InitializeInit() 1 0.06977 0.1097 0.1418 4.06% Amr::defBaseLevel() 1 0.06977 0.1097 0.1418 4.06% FabArray::ParallelCopy() 41 0.08433 0.1029 0.1354 3.87% Castro::initData() 1 0.05187 0.09311 0.1258 3.60% check_for_negative_density() 10 0.01443 0.07881 0.12 3.43% Castro::clean_state() 62 0.1103 0.114 0.1171 3.35% Castro::expand_state() 10 0.09816 0.1077 0.1151 3.29% Castro::do_old_sources() 10 0.09647 0.1043 0.1105 3.16% Amr::FinalizeInit() 1 0.02972 0.06162 0.102 2.92% Castro::estTimeStep() 21 0.02283 0.05914 0.1009 2.89% FabArray::ParallelCopy_finish() 41 0.03797 0.06169 0.09974 2.85% amrex::Copy() 193 0.06442 0.08209 0.09803 2.80% FabArray::setVal() 143 0.06291 0.07202 0.08085 2.31% Castro::initialize_advance() 10 0.06591 0.07517 0.07933 2.27% Castro::computeInitialDt() 2 0.00233 0.0344 0.07436 2.13% Castro::computeTemp() 63 0.06327 0.06707 0.0692 1.98% Castro::do_new_sources() 10 0.05851 0.06335 0.06863 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04573 0.04782 0.04873 1.39% Castro::reset_internal_energy(Fab) 1008 0.04544 0.04753 0.04845 1.39% FabArray::ParallelCopy_nowait() 41 0.03558 0.04116 0.04626 1.32% Castro::normalize_species() 62 0.0408 0.0417 0.04234 1.21% StateDataPhysBCFunct::() 41 0.02874 0.0314 0.03522 1.01% StateData::FillBoundary(geom) 41 0.02864 0.03129 0.03511 1.00% Castro::construct_new_source() 50 0.02694 0.03061 0.03298 0.94% Gravity::interpolate_monopole_grav() 21 0.02821 0.02996 0.03247 0.93% Castro::post_init() 1 0.025 0.02686 0.02758 0.79% Amr::writePlotFile() 2 0.0248 0.0256 0.02739 0.78% Castro::construct_new_gravity_source() 10 0.02158 0.02428 0.0263 0.75% Castro::finalize_do_advance() 10 0.01182 0.01662 0.02118 0.61% VisMF::Write(FabArray) 2 0.0124 0.01344 0.01588 0.45% Castro::post_timestep() 10 0.01497 0.01531 0.01572 0.45% Castro::apply_source_to_state() 20 0.01054 0.01291 0.01427 0.41% FabArray::Saxpy() 20 0.0105 0.01287 0.01423 0.41% FabArray::setDomainBndry() 41 0.006939 0.009857 0.0125 0.36% Castro::check_for_nan() 20 0.009707 0.01063 0.01206 0.34% MultiFab::contains_nan() 20 0.009682 0.0106 0.01204 0.34% Castro::Castro() 1 0.01029 0.01099 0.01187 0.34% Castro::construct_old_source() 50 0.006533 0.009494 0.01053 0.30% Castro::construct_old_gravity_source() 10 0.006471 0.009423 0.01044 0.30% Castro::computeNewDt() 9 0.009136 0.009145 0.00915 0.26% Castro::initMFs() 1 0.006312 0.006852 0.00771 0.22% Castro::enforce_min_density() 62 0.005698 0.006036 0.006478 0.19% AmrLevel::AmrLevel(dm) 1 0.005149 0.005411 0.005828 0.17% StateData::define() 4 0.00513 0.005393 0.005809 0.17% Castro::swap_state_time_levels() 10 0.003163 0.004148 0.004402 0.13% Castro::finalize_advance() 10 0.00314 0.003436 0.003651 0.10% Castro::post_regrid() 1 0.001557 0.001644 0.001915 0.05% Castro::buildMetrics() 1 0.001598 0.00171 0.001876 0.05% Amr::InitAmr() 1 0.000282 0.0003125 0.0004644 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.234e-05 0.0001688 0.000203 0.01% DistributionMapping::LeastUsedCPUs() 1 6.918e-06 0.0001617 0.0001951 0.01% FabArrayBase::getCPC() 41 7.184e-05 8.659e-05 0.0001174 0.00% Castro::enforce_consistent_e() 1 7.766e-05 9.068e-05 0.0001106 0.00% Amr::writeSmallPlotFile() 1 3.194e-05 5.036e-05 8.138e-05 0.00% FabArrayBase::CPC::define() 2 2.498e-05 3.069e-05 5.027e-05 0.00% Castro::enforce_speed_limit() 62 2.52e-05 2.987e-05 3.646e-05 0.00% Gravity::swapTimeLevels() 10 7.732e-06 1.06e-05 1.863e-05 0.00% Gravity::set_mass_offset() 10 9.102e-06 1.188e-05 1.372e-05 0.00% Castro::FluxRegCrseInit 10 5.639e-06 8.179e-06 1.365e-05 0.00% Amr::initSubcycle() 1 1.004e-05 1.085e-05 1.181e-05 0.00% Castro::create_source_corrector() 10 6.139e-06 8.657e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.485e-06 7.179e-06 8.593e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.757e-06 6.246e-06 0.00% Castro::FluxRegFineAdd() 10 1.978e-06 2.261e-06 2.647e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.10-23-g601cc4ee80e0) finalized