Initializing AMReX (23.11-3-g606a94c69d64)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-3-g606a94c69d64) initialized Starting run at 05:35:35 UTC on 2023-11-02. Successfully read inputs file ... Castro git describe: 23.11-1-g445a2ee3c AMReX git describe: 23.11-3-g606a94c69 Microphysics git describe: 23.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014804735 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362471316 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344668666 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32681844 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328297077 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.32788792 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.368433278 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312248124 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306736882 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.306121457 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30598302 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010268578 seconds Ending run at 05:35:39 UTC on 2023-11-02. Run time = 3.515527357 Run time without initialization = 3.30572086 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.515 ... 3.515 ... 3.516 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3021 2.3433 2.3808 67.72% Gravity::make_radial_gravity() 21 0.2915 0.31 0.3278 9.33% Castro::initData() 1 0.04776 0.08889 0.1437 4.09% Castro::estTimeStep() 21 0.02384 0.08535 0.1293 3.68% check_for_negative_density() 10 0.03859 0.08081 0.1222 3.48% amrex::Copy() 193 0.06359 0.07979 0.09916 2.82% FabArray::ParallelCopy_finish() 41 0.0358 0.05165 0.09557 2.72% FabArray::setVal() 143 0.0555 0.06903 0.07648 2.18% Castro::reset_internal_energy(Fab) 1008 0.04724 0.04857 0.05274 1.50% Castro::normalize_species() 62 0.04123 0.0422 0.04635 1.32% FabArray::ParallelCopy_nowait() 41 0.0343 0.0399 0.04223 1.20% StateData::FillBoundary(geom) 41 0.02864 0.03105 0.03492 0.99% FillPatchIterator::Initialize 41 0.02691 0.03113 0.03386 0.96% Gravity::interpolate_monopole_grav() 21 0.02788 0.02949 0.03009 0.86% Castro::construct_new_gravity_source() 10 0.02105 0.02401 0.02623 0.75% Castro::computeTemp() 63 0.01864 0.01974 0.02065 0.59% Castro::initialize_do_advance() 10 0.01176 0.01634 0.01753 0.50% VisMF::Write(FabArray) 2 0.01312 0.01384 0.01641 0.47% MultiFab::contains_nan() 20 0.009863 0.0117 0.01459 0.41% Castro::initialize_advance() 10 0.003908 0.01072 0.01437 0.41% FabArray::Saxpy() 20 0.01053 0.01259 0.01403 0.40% FabArray::setDomainBndry() 41 0.006963 0.009721 0.01204 0.34% Castro::construct_old_gravity_source() 10 0.006465 0.00921 0.01016 0.29% Amr::writePlotFile() 2 0.006173 0.009098 0.009995 0.28% Castro::initMFs() 1 0.006268 0.006718 0.008074 0.23% Castro::construct_new_source() 50 0.005618 0.006303 0.006661 0.19% Castro::enforce_min_density() 62 0.005644 0.006063 0.006447 0.18% StateData::define() 4 0.005249 0.005437 0.005874 0.17% main() 1 0.004056 0.004503 0.005054 0.14% Castro::swap_state_time_levels() 10 0.003135 0.004183 0.004887 0.14% Gravity::get_new_grav_vector() 11 0.002883 0.003429 0.003846 0.11% Gravity::get_old_grav_vector() 10 0.001636 0.002109 0.003314 0.09% Amr::coarseTimeStep() 10 0.0009521 0.001761 0.002174 0.06% Castro::buildMetrics() 1 0.001494 0.001556 0.001726 0.05% Castro::finalize_do_advance() 10 0.0005808 0.001087 0.001353 0.04% AmrLevel::FillPatch() 41 0.0007844 0.0008886 0.001007 0.03% Amr::InitAmr() 1 0.0002606 0.0002958 0.0004536 0.01% Amr::timeStep() 10 0.0001737 0.0002218 0.0003926 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002678 0.0003131 0.0003706 0.01% Castro::clean_state() 62 0.0001472 0.0001598 0.0002078 0.01% DistributionMapping::LeastUsedCPUs() 1 7.941e-06 0.0001641 0.0001947 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001052 0.0001358 0.0001814 0.01% Castro::do_advance_ctu() 10 0.0001405 0.0001579 0.0001775 0.01% StateDataPhysBCFunct::() 41 8.628e-05 0.0001034 0.0001329 0.00% Castro::finalize_advance() 10 7.759e-05 9.921e-05 0.0001192 0.00% Castro::do_old_sources() 10 6.833e-05 8.853e-05 0.000104 0.00% Castro::do_new_sources() 10 5.559e-05 7.528e-05 0.0001027 0.00% Amr::writeSmallPlotFile() 1 3.831e-05 7.111e-05 9.654e-05 0.00% FabArray::ParallelCopy() 41 6.88e-05 8.028e-05 9.419e-05 0.00% Castro::enforce_consistent_e() 1 7.54e-05 8.272e-05 9.278e-05 0.00% FillPatchSingleLevel 41 6.008e-05 7.131e-05 9.089e-05 0.00% Castro::construct_old_source() 50 5.249e-05 6.959e-05 9.051e-05 0.00% Castro::Castro() 1 5.875e-05 6.743e-05 7.851e-05 0.00% FabArrayBase::getCPC() 41 4.299e-05 5.614e-05 7.676e-05 0.00% Castro::apply_source_to_state() 20 3.992e-05 5.092e-05 7.064e-05 0.00% Amr::FinalizeInit() 1 3.946e-06 1.271e-05 6.555e-05 0.00% Castro::construct_old_gravity() 10 3.307e-05 4.747e-05 6.503e-05 0.00% Castro::subcycle_advance_ctu() 10 3.712e-05 5.047e-05 6.345e-05 0.00% Amr::defBaseLevel() 1 3.298e-05 4.452e-05 6.179e-05 0.00% Castro::advance() 10 3.575e-05 4.434e-05 5.078e-05 0.00% Castro::check_for_nan() 20 2.236e-05 2.726e-05 4.511e-05 0.00% Castro::construct_new_gravity() 10 2.997e-05 3.493e-05 4.11e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.992e-05 3.637e-05 0.00% FabArrayBase::CPC::define() 2 2.336e-05 2.638e-05 3.177e-05 0.00% Castro::expand_state() 10 1.796e-05 2.517e-05 3.05e-05 0.00% Castro::create_source_corrector() 10 5.96e-06 1.034e-05 2.732e-05 0.00% Castro::post_timestep() 10 1.199e-05 1.591e-05 2.417e-05 0.00% Castro::computeNewDt() 9 7.2e-06 1.037e-05 2.413e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.26e-05 1.82e-05 2.273e-05 0.00% Castro::post_init() 1 1.356e-05 1.524e-05 1.899e-05 0.00% Gravity::set_mass_offset() 10 9.461e-06 1.116e-05 1.351e-05 0.00% Amr::initSubcycle() 1 9.747e-06 1.062e-05 1.166e-05 0.00% Gravity::swapTimeLevels() 10 5.954e-06 9.059e-06 1.126e-05 0.00% Castro::FluxRegCrseInit 10 5.902e-06 7.341e-06 8.957e-06 0.00% Castro::retry_advance_ctu() 10 6.05e-06 6.875e-06 8.197e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.065e-06 4.64e-06 6.205e-06 0.00% Amr::InitializeInit() 1 1.708e-06 2.602e-06 5.845e-06 0.00% Castro::post_regrid() 1 2.41e-06 3.571e-06 5.822e-06 0.00% Castro::computeInitialDt() 2 3.156e-06 3.939e-06 4.708e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.416e-06 3.307e-06 0.00% Amr::init() 1 1.779e-06 2.131e-06 2.308e-06 0.00% Amr::initialInit() 1 1.453e-06 1.804e-06 2.219e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 9.63e-07 1.034e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.515 3.515 3.516 100.00% Amr::coarseTimeStep() 10 3.29 3.29 3.29 93.60% Amr::timeStep() 10 3.276 3.277 3.278 93.23% Castro::advance() 10 3.261 3.261 3.261 92.77% Castro::subcycle_advance_ctu() 10 3.182 3.187 3.205 91.16% Castro::do_advance_ctu() 10 3.182 3.187 3.205 91.16% Castro::construct_ctu_hydro_source() 10 2.441 2.445 2.448 69.63% Gravity::make_radial_gravity() 21 0.3068 0.3262 0.3406 9.69% AmrLevel::FillPatch() 41 0.1727 0.1961 0.2193 6.24% Castro::construct_old_gravity() 10 0.1878 0.2024 0.2154 6.13% Gravity::get_old_grav_vector() 10 0.1868 0.2017 0.2148 6.11% Amr::init() 1 0.2092 0.2094 0.2094 5.96% Gravity::get_new_grav_vector() 11 0.2048 0.2069 0.2085 5.93% FillPatchIterator::Initialize 41 0.1441 0.1639 0.1956 5.56% Amr::initialInit() 1 0.1939 0.1942 0.1946 5.53% Castro::construct_new_gravity() 10 0.1803 0.182 0.1829 5.20% Castro::initialize_do_advance() 10 0.1572 0.164 0.1749 4.97% Amr::InitializeInit() 1 0.06768 0.1092 0.1654 4.70% Amr::defBaseLevel() 1 0.06767 0.1092 0.1654 4.70% FillPatchIterator::FillFromLevel0() 41 0.1102 0.1231 0.1607 4.57% FillPatchSingleLevel 41 0.1101 0.1229 0.1605 4.56% Castro::initData() 1 0.05177 0.09285 0.1477 4.20% FabArray::ParallelCopy() 41 0.07685 0.09171 0.1301 3.70% Castro::estTimeStep() 21 0.02384 0.08535 0.1293 3.68% Amr::FinalizeInit() 1 0.02919 0.08492 0.1266 3.60% Castro::clean_state() 62 0.1127 0.1162 0.1255 3.57% check_for_negative_density() 10 0.03859 0.08081 0.1222 3.48% Castro::expand_state() 10 0.09859 0.1083 0.1202 3.42% Castro::do_old_sources() 10 0.08849 0.09703 0.1003 2.85% Castro::computeInitialDt() 2 0.002485 0.0586 0.1002 2.85% amrex::Copy() 193 0.06359 0.07979 0.09916 2.82% FabArray::ParallelCopy_finish() 41 0.0358 0.05165 0.09557 2.72% FabArray::setVal() 143 0.0555 0.06903 0.07648 2.18% Castro::initialize_advance() 10 0.05226 0.07052 0.07556 2.15% Castro::computeTemp() 63 0.06624 0.06862 0.07351 2.09% Castro::do_new_sources() 10 0.05951 0.06322 0.0685 1.95% Castro::reset_internal_energy(MultiFab) 63 0.0476 0.04889 0.05303 1.51% Castro::reset_internal_energy(Fab) 1008 0.04724 0.04857 0.05274 1.50% Castro::normalize_species() 62 0.04123 0.0422 0.04635 1.32% FabArray::ParallelCopy_nowait() 41 0.0344 0.03998 0.0423 1.20% StateDataPhysBCFunct::() 41 0.02874 0.03116 0.035 1.00% StateData::FillBoundary(geom) 41 0.02864 0.03105 0.03492 0.99% Castro::construct_new_source() 50 0.02667 0.03032 0.03278 0.93% Gravity::interpolate_monopole_grav() 21 0.02788 0.02949 0.03009 0.86% Castro::construct_new_gravity_source() 10 0.02105 0.02401 0.02623 0.75% Castro::post_init() 1 0.02538 0.02593 0.02621 0.75% Amr::writePlotFile() 2 0.02516 0.02554 0.02587 0.74% Castro::finalize_do_advance() 10 0.01197 0.01724 0.0203 0.58% VisMF::Write(FabArray) 2 0.01312 0.01384 0.01641 0.47% Castro::post_timestep() 10 0.01515 0.01559 0.01607 0.46% Castro::check_for_nan() 20 0.009909 0.01173 0.01461 0.42% MultiFab::contains_nan() 20 0.009863 0.0117 0.01459 0.41% Castro::apply_source_to_state() 20 0.01059 0.01264 0.0141 0.40% FabArray::Saxpy() 20 0.01053 0.01259 0.01403 0.40% FabArray::setDomainBndry() 41 0.006963 0.009721 0.01204 0.34% Castro::Castro() 1 0.01036 0.01073 0.01169 0.33% Castro::computeNewDt() 9 0.01058 0.01061 0.01062 0.30% Castro::construct_old_source() 50 0.006523 0.009279 0.01025 0.29% Castro::construct_old_gravity_source() 10 0.006465 0.00921 0.01016 0.29% Castro::initMFs() 1 0.006268 0.006718 0.008074 0.23% Castro::enforce_min_density() 62 0.005644 0.006063 0.006447 0.18% AmrLevel::AmrLevel(dm) 1 0.005265 0.005455 0.005888 0.17% StateData::define() 4 0.005249 0.005437 0.005874 0.17% Castro::swap_state_time_levels() 10 0.003135 0.004183 0.004887 0.14% Castro::finalize_advance() 10 0.003131 0.003356 0.003543 0.10% Castro::post_regrid() 1 0.001519 0.001642 0.001937 0.06% Castro::buildMetrics() 1 0.001617 0.001688 0.001881 0.05% Amr::InitAmr() 1 0.0002707 0.0003064 0.0004652 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.315e-05 0.0001697 0.0002017 0.01% DistributionMapping::LeastUsedCPUs() 1 7.941e-06 0.0001641 0.0001947 0.01% FabArrayBase::getCPC() 41 6.84e-05 8.252e-05 0.0001074 0.00% Amr::writeSmallPlotFile() 1 3.831e-05 7.111e-05 9.654e-05 0.00% Castro::enforce_consistent_e() 1 7.54e-05 8.272e-05 9.278e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 2.992e-05 3.637e-05 0.00% FabArrayBase::CPC::define() 2 2.336e-05 2.638e-05 3.177e-05 0.00% Castro::create_source_corrector() 10 5.96e-06 1.034e-05 2.732e-05 0.00% Gravity::set_mass_offset() 10 9.461e-06 1.116e-05 1.351e-05 0.00% Amr::initSubcycle() 1 9.747e-06 1.062e-05 1.166e-05 0.00% Gravity::swapTimeLevels() 10 5.954e-06 9.059e-06 1.126e-05 0.00% Castro::FluxRegCrseInit 10 5.902e-06 7.341e-06 8.957e-06 0.00% Castro::retry_advance_ctu() 10 6.05e-06 6.875e-06 8.197e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.416e-06 3.307e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 9.63e-07 1.034e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-3-g606a94c69d64) finalized