Initializing AMReX (23.11-4-ga7afcba3cffd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-4-ga7afcba3cffd) initialized Starting run at 05:35:56 UTC on 2023-11-03. Successfully read inputs file ... Castro git describe: 23.11-2-gda3e4b7d9 AMReX git describe: 23.11-4-ga7afcba3c Microphysics git describe: 23.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014356339 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354901202 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348746162 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332889675 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334130752 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332928109 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.370315306 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316246337 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308966359 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309300877 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310279076 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009922601 seconds Ending run at 05:36:00 UTC on 2023-11-03. Run time = 3.523306605 Run time without initialization = 3.334046341 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.523 ... 3.523 ... 3.523 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2590 2.3601 2.4067 68.31% Gravity::make_radial_gravity() 21 0.2845 0.3079 0.3307 9.39% check_for_negative_density() 10 0.02044 0.06948 0.1743 4.95% Castro::initData() 1 0.04791 0.08673 0.127 3.60% Castro::estTimeStep() 21 0.02486 0.06822 0.1098 3.12% amrex::Copy() 193 0.07459 0.08336 0.1004 2.85% FabArray::setVal() 143 0.06818 0.07405 0.08187 2.32% FabArray::ParallelCopy_finish() 41 0.04012 0.05408 0.07215 2.05% Castro::reset_internal_energy(Fab) 1008 0.0471 0.04856 0.05283 1.50% FabArray::ParallelCopy_nowait() 41 0.0369 0.04211 0.04444 1.26% Castro::normalize_species() 62 0.04085 0.04181 0.0428 1.21% StateData::FillBoundary(geom) 41 0.02942 0.03288 0.03792 1.08% FillPatchIterator::Initialize 41 0.02701 0.03394 0.03738 1.06% Gravity::interpolate_monopole_grav() 21 0.02765 0.02917 0.03002 0.85% Castro::construct_new_gravity_source() 10 0.02307 0.02438 0.02611 0.74% Castro::computeTemp() 63 0.01943 0.0203 0.02362 0.67% Castro::initialize_do_advance() 10 0.01159 0.01738 0.01901 0.54% Castro::initialize_advance() 10 0.01041 0.01307 0.01585 0.45% MultiFab::contains_nan() 20 0.01007 0.01228 0.01563 0.44% VisMF::Write(FabArray) 2 0.01232 0.01276 0.01512 0.43% FabArray::Saxpy() 20 0.01172 0.01311 0.01425 0.40% FabArray::setDomainBndry() 41 0.006578 0.009858 0.01117 0.32% Castro::construct_old_gravity_source() 10 0.007171 0.009658 0.01058 0.30% Amr::writePlotFile() 2 0.00643 0.008617 0.009176 0.26% Castro::initMFs() 1 0.006306 0.006782 0.008118 0.23% Castro::enforce_min_density() 62 0.007279 0.007454 0.007626 0.22% Castro::construct_new_source() 50 0.005939 0.006498 0.006945 0.20% StateData::define() 4 0.00528 0.005482 0.006034 0.17% main() 1 0.003996 0.004417 0.004753 0.13% Castro::swap_state_time_levels() 10 0.003148 0.004463 0.004669 0.13% Gravity::get_new_grav_vector() 11 0.002686 0.003638 0.004021 0.11% Gravity::get_old_grav_vector() 10 0.001372 0.002318 0.004012 0.11% Amr::coarseTimeStep() 10 0.001032 0.001746 0.002176 0.06% Castro::buildMetrics() 1 0.001476 0.001548 0.001722 0.05% Castro::finalize_do_advance() 10 0.0005881 0.001297 0.001632 0.05% AmrLevel::FillPatch() 41 0.0007088 0.0009849 0.001228 0.03% Amr::InitAmr() 1 0.0002687 0.000292 0.0003944 0.01% Amr::timeStep() 10 0.000142 0.0002051 0.0003911 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002575 0.0002853 0.0003567 0.01% Castro::do_advance_ctu() 10 0.000113 0.0001431 0.0001823 0.01% Castro::clean_state() 62 0.0001453 0.0001533 0.0001702 0.00% FillPatchIterator::FillFromLevel0() 41 0.000102 0.0001189 0.0001559 0.00% StateDataPhysBCFunct::() 41 8.417e-05 0.0001072 0.0001233 0.00% Castro::do_old_sources() 10 7.283e-05 9.209e-05 0.0001163 0.00% Castro::finalize_advance() 10 6.864e-05 9.186e-05 0.000116 0.00% DistributionMapping::LeastUsedCPUs() 1 6.932e-06 9.749e-05 0.0001159 0.00% Castro::construct_old_gravity() 10 2.997e-05 4.575e-05 0.0001061 0.00% Castro::do_new_sources() 10 4.885e-05 6.432e-05 0.0001028 0.00% Amr::FinalizeInit() 1 3.987e-06 1.707e-05 0.0001021 0.00% Castro::enforce_consistent_e() 1 7.595e-05 8.548e-05 9.196e-05 0.00% Castro::construct_old_source() 50 4.825e-05 6.991e-05 8.562e-05 0.00% FabArray::ParallelCopy() 41 6.517e-05 7.305e-05 7.911e-05 0.00% Castro::Castro() 1 5.51e-05 6.501e-05 7.815e-05 0.00% Amr::writeSmallPlotFile() 1 3.154e-05 5.131e-05 7.389e-05 0.00% FillPatchSingleLevel 41 6.122e-05 6.642e-05 7.08e-05 0.00% Castro::check_for_nan() 20 2.131e-05 3.095e-05 6.071e-05 0.00% FabArrayBase::getCPC() 41 3.931e-05 4.929e-05 6.064e-05 0.00% Castro::subcycle_advance_ctu() 10 4.195e-05 4.806e-05 5.674e-05 0.00% Castro::advance() 10 3.022e-05 4.332e-05 5.51e-05 0.00% Castro::apply_source_to_state() 20 3.262e-05 4.48e-05 5.239e-05 0.00% Amr::defBaseLevel() 1 2.53e-05 3.452e-05 4.605e-05 0.00% Castro::construct_new_gravity() 10 2.685e-05 3.243e-05 3.846e-05 0.00% Castro::expand_state() 10 1.885e-05 2.47e-05 3.202e-05 0.00% Castro::enforce_speed_limit() 62 2.331e-05 2.667e-05 3.17e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.503e-05 2.991e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.307e-05 2.148e-05 2.914e-05 0.00% Castro::post_init() 1 1.312e-05 1.566e-05 1.998e-05 0.00% Castro::post_timestep() 10 1.133e-05 1.392e-05 1.601e-05 0.00% Gravity::swapTimeLevels() 10 7.88e-06 1.17e-05 1.278e-05 0.00% Gravity::set_mass_offset() 10 8.576e-06 1.045e-05 1.244e-05 0.00% Amr::initSubcycle() 1 9.652e-06 1.053e-05 1.192e-05 0.00% Castro::create_source_corrector() 10 6.367e-06 8.838e-06 1.039e-05 0.00% Castro::computeNewDt() 9 7.504e-06 8.371e-06 9.458e-06 0.00% Castro::FluxRegCrseInit 10 6.979e-06 7.83e-06 8.671e-06 0.00% Castro::retry_advance_ctu() 10 6.161e-06 7.037e-06 7.81e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.739e-06 5.573e-06 6.696e-06 0.00% Castro::computeInitialDt() 2 3.247e-06 3.947e-06 4.922e-06 0.00% Amr::InitializeInit() 1 1.743e-06 2.331e-06 4.504e-06 0.00% Castro::post_regrid() 1 1.735e-06 2.905e-06 4.208e-06 0.00% Castro::FluxRegFineAdd() 10 1.848e-06 2.478e-06 2.926e-06 0.00% Amr::init() 1 1.814e-06 2.271e-06 2.832e-06 0.00% Amr::initialInit() 1 1.668e-06 1.932e-06 2.177e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.109e-06 1.266e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.523 3.523 3.523 100.00% Amr::coarseTimeStep() 10 3.319 3.319 3.319 94.21% Amr::timeStep() 10 3.307 3.307 3.308 93.89% Castro::advance() 10 3.291 3.291 3.292 93.43% Castro::subcycle_advance_ctu() 10 3.207 3.21 3.213 91.20% Castro::do_advance_ctu() 10 3.207 3.21 3.213 91.20% Castro::construct_ctu_hydro_source() 10 2.447 2.451 2.455 69.67% Gravity::make_radial_gravity() 21 0.3003 0.3244 0.3455 9.81% Castro::construct_old_gravity() 10 0.1828 0.2031 0.2222 6.31% Gravity::get_old_grav_vector() 10 0.1817 0.2023 0.2215 6.29% AmrLevel::FillPatch() 41 0.1808 0.2061 0.2185 6.20% Gravity::get_new_grav_vector() 11 0.2054 0.2076 0.2086 5.92% Amr::init() 1 0.1887 0.1888 0.1888 5.36% Castro::initialize_do_advance() 10 0.1496 0.1692 0.1872 5.31% Castro::construct_new_gravity() 10 0.1839 0.185 0.1855 5.26% FillPatchIterator::Initialize 41 0.1517 0.1733 0.1854 5.26% Amr::initialInit() 1 0.1742 0.1745 0.1746 4.96% check_for_negative_density() 10 0.02044 0.06948 0.1743 4.95% Amr::InitializeInit() 1 0.06775 0.107 0.1482 4.20% Amr::defBaseLevel() 1 0.06775 0.107 0.1482 4.20% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1295 0.1389 3.94% FillPatchSingleLevel 41 0.1148 0.1294 0.1388 3.94% Castro::initData() 1 0.05184 0.09063 0.1304 3.70% Castro::clean_state() 62 0.1147 0.1177 0.1257 3.57% Castro::expand_state() 10 0.1007 0.1117 0.1256 3.57% Castro::estTimeStep() 21 0.02486 0.06822 0.1098 3.12% FabArray::ParallelCopy() 41 0.08188 0.09634 0.1092 3.10% Castro::do_old_sources() 10 0.0934 0.1026 0.1079 3.06% Amr::FinalizeInit() 1 0.02619 0.06744 0.1068 3.03% amrex::Copy() 193 0.07459 0.08336 0.1004 2.85% Castro::computeInitialDt() 2 0.002154 0.04329 0.08257 2.34% FabArray::setVal() 143 0.06818 0.07405 0.08187 2.32% Castro::initialize_advance() 10 0.07517 0.07762 0.0808 2.29% Castro::computeTemp() 63 0.06689 0.06915 0.07674 2.18% FabArray::ParallelCopy_finish() 41 0.04012 0.05408 0.07215 2.05% Castro::do_new_sources() 10 0.0609 0.06463 0.06921 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04741 0.04885 0.05312 1.51% Castro::reset_internal_energy(Fab) 1008 0.0471 0.04856 0.05283 1.50% FabArray::ParallelCopy_nowait() 41 0.03697 0.04218 0.0445 1.26% Castro::normalize_species() 62 0.04085 0.04181 0.0428 1.21% StateDataPhysBCFunct::() 41 0.02951 0.03299 0.03803 1.08% StateData::FillBoundary(geom) 41 0.02942 0.03288 0.03792 1.08% Castro::construct_new_source() 50 0.02908 0.03088 0.03302 0.94% Gravity::interpolate_monopole_grav() 21 0.02765 0.02917 0.03002 0.85% Castro::construct_new_gravity_source() 10 0.02307 0.02438 0.02611 0.74% Amr::writePlotFile() 2 0.02423 0.02436 0.02453 0.70% Castro::post_init() 1 0.02346 0.0237 0.0238 0.68% Castro::finalize_do_advance() 10 0.01199 0.01719 0.02166 0.61% Castro::post_timestep() 10 0.01555 0.01579 0.01611 0.46% Castro::check_for_nan() 20 0.01009 0.01231 0.01567 0.44% MultiFab::contains_nan() 20 0.01007 0.01228 0.01563 0.44% VisMF::Write(FabArray) 2 0.01232 0.01276 0.01512 0.43% Castro::apply_source_to_state() 20 0.01177 0.01316 0.01429 0.41% FabArray::Saxpy() 20 0.01172 0.01311 0.01425 0.40% Castro::Castro() 1 0.01041 0.01075 0.01161 0.33% FabArray::setDomainBndry() 41 0.006578 0.009858 0.01117 0.32% Castro::construct_old_source() 50 0.007219 0.009728 0.01066 0.30% Castro::construct_old_gravity_source() 10 0.007171 0.009658 0.01058 0.30% Castro::computeNewDt() 9 0.009043 0.009049 0.009057 0.26% Castro::initMFs() 1 0.006306 0.006782 0.008118 0.23% Castro::enforce_min_density() 62 0.007279 0.007454 0.007626 0.22% AmrLevel::AmrLevel(dm) 1 0.005294 0.005503 0.006064 0.17% StateData::define() 4 0.00528 0.005482 0.006034 0.17% Castro::swap_state_time_levels() 10 0.003148 0.004463 0.004669 0.13% Castro::finalize_advance() 10 0.003121 0.003334 0.003526 0.10% Castro::buildMetrics() 1 0.001601 0.001683 0.001883 0.05% Castro::post_regrid() 1 0.001489 0.001564 0.001634 0.05% Amr::InitAmr() 1 0.0002787 0.0003026 0.0004045 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.151e-05 0.0001042 0.0001236 0.00% DistributionMapping::LeastUsedCPUs() 1 6.932e-06 9.749e-05 0.0001159 0.00% Castro::enforce_consistent_e() 1 7.595e-05 8.548e-05 9.196e-05 0.00% FabArrayBase::getCPC() 41 6.833e-05 7.432e-05 8.937e-05 0.00% Amr::writeSmallPlotFile() 1 3.154e-05 5.131e-05 7.389e-05 0.00% Castro::enforce_speed_limit() 62 2.331e-05 2.667e-05 3.17e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.503e-05 2.991e-05 0.00% Gravity::swapTimeLevels() 10 7.88e-06 1.17e-05 1.278e-05 0.00% Gravity::set_mass_offset() 10 8.576e-06 1.045e-05 1.244e-05 0.00% Amr::initSubcycle() 1 9.652e-06 1.053e-05 1.192e-05 0.00% Castro::create_source_corrector() 10 6.367e-06 8.838e-06 1.039e-05 0.00% Castro::FluxRegCrseInit 10 6.979e-06 7.83e-06 8.671e-06 0.00% Castro::retry_advance_ctu() 10 6.161e-06 7.037e-06 7.81e-06 0.00% Castro::FluxRegFineAdd() 10 1.848e-06 2.478e-06 2.926e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.109e-06 1.266e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-4-ga7afcba3cffd) finalized