Initializing AMReX (23.11-4-ga7afcba3cffd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-4-ga7afcba3cffd) initialized Starting run at 06:25:05 UTC on 2023-11-06. Successfully read inputs file ... Castro git describe: 23.11-3-g640a8312a AMReX git describe: 23.11-4-ga7afcba3c Microphysics git describe: 23.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014017249 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372725451 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.383956314 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.348678089 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327364103 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348654195 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351836321 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338137359 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339711755 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33921249 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339448953 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009777346 seconds Ending run at 06:25:09 UTC on 2023-11-06. Run time = 3.688806605 Run time without initialization = 3.50520662 Average number of zones advanced per microsecond: 0.748 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.688 ... 3.689 ... 3.689 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3974 2.4549 2.5598 69.39% Gravity::make_radial_gravity() 21 0.3026 0.3133 0.3246 8.80% check_for_negative_density() 10 0.03459 0.1421 0.2025 5.49% Castro::initData() 1 0.04743 0.08513 0.1197 3.24% Castro::estTimeStep() 21 0.02246 0.0695 0.1143 3.10% FabArray::ParallelCopy_finish() 41 0.03588 0.06088 0.09589 2.60% amrex::Copy() 193 0.06382 0.07808 0.08914 2.42% FabArray::setVal() 143 0.06238 0.07187 0.08521 2.31% Castro::reset_internal_energy(Fab) 1008 0.04487 0.04699 0.04875 1.32% Castro::normalize_species() 62 0.04103 0.0424 0.04402 1.19% FabArray::ParallelCopy_nowait() 41 0.03447 0.04114 0.04356 1.18% StateData::FillBoundary(geom) 41 0.03159 0.03309 0.03824 1.04% FillPatchIterator::Initialize 41 0.02677 0.03312 0.03721 1.01% Gravity::interpolate_monopole_grav() 21 0.0281 0.02962 0.03227 0.87% Castro::construct_new_gravity_source() 10 0.02235 0.02549 0.02953 0.80% Castro::initialize_do_advance() 10 0.01121 0.01755 0.02152 0.58% Castro::computeTemp() 63 0.01725 0.01909 0.02035 0.55% VisMF::Write(FabArray) 2 0.01225 0.01288 0.0155 0.42% FabArray::Saxpy() 20 0.01117 0.01302 0.01368 0.37% Castro::initialize_advance() 10 0.00411 0.009943 0.01354 0.37% MultiFab::contains_nan() 20 0.01014 0.0113 0.01206 0.33% FabArray::setDomainBndry() 41 0.007819 0.009771 0.01197 0.32% Castro::construct_old_gravity_source() 10 0.0079 0.009517 0.01026 0.28% Amr::writePlotFile() 2 0.006496 0.008529 0.009055 0.25% Castro::enforce_min_density() 62 0.007117 0.00745 0.007811 0.21% Castro::initMFs() 1 0.006368 0.006523 0.007054 0.19% Castro::construct_new_source() 50 0.005488 0.006066 0.006282 0.17% StateData::define() 4 0.005401 0.005502 0.00576 0.16% main() 1 0.003942 0.004528 0.004925 0.13% Castro::swap_state_time_levels() 10 0.002011 0.004173 0.004882 0.13% Amr::coarseTimeStep() 10 0.001484 0.002879 0.004077 0.11% Gravity::get_new_grav_vector() 11 0.002772 0.003453 0.003834 0.10% Gravity::get_old_grav_vector() 10 0.001591 0.001999 0.002352 0.06% Castro::buildMetrics() 1 0.001559 0.001645 0.00197 0.05% Castro::finalize_do_advance() 10 0.000487 0.001363 0.001746 0.05% AmrLevel::FillPatch() 41 0.0006902 0.0009786 0.001446 0.04% Amr::InitAmr() 1 0.0002733 0.0002948 0.0004022 0.01% Amr::timeStep() 10 0.0001677 0.0002087 0.0003769 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002748 0.0002878 0.0003092 0.01% Castro::do_advance_ctu() 10 0.0001247 0.000148 0.0002008 0.01% Castro::clean_state() 62 0.0001421 0.0001559 0.000166 0.00% StateDataPhysBCFunct::() 41 0.0001 0.0001176 0.000151 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001268 0.0001493 0.00% DistributionMapping::LeastUsedCPUs() 1 6.862e-06 0.0001122 0.0001275 0.00% Castro::finalize_advance() 10 6.535e-05 8.715e-05 0.0001122 0.00% Castro::do_old_sources() 10 7.492e-05 9.08e-05 9.921e-05 0.00% Castro::enforce_consistent_e() 1 7.549e-05 8.846e-05 9.916e-05 0.00% Castro::Castro() 1 6.011e-05 8.279e-05 9.711e-05 0.00% FabArray::ParallelCopy() 41 7.11e-05 8.068e-05 8.745e-05 0.00% FillPatchSingleLevel 41 6.635e-05 7.187e-05 8.52e-05 0.00% Castro::construct_old_source() 50 5.429e-05 7.106e-05 8.181e-05 0.00% Castro::apply_source_to_state() 20 3.869e-05 4.968e-05 7.7e-05 0.00% Amr::FinalizeInit() 1 3.801e-06 1.349e-05 7.613e-05 0.00% Castro::do_new_sources() 10 5.472e-05 6.17e-05 6.972e-05 0.00% FabArrayBase::getCPC() 41 4.246e-05 5.023e-05 6.889e-05 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.562e-05 6.475e-05 0.00% Castro::advance() 10 3.547e-05 4.876e-05 6.458e-05 0.00% Castro::subcycle_advance_ctu() 10 4.249e-05 4.934e-05 5.773e-05 0.00% Amr::defBaseLevel() 1 2.719e-05 3.774e-05 5.614e-05 0.00% Castro::construct_new_gravity() 10 3.052e-05 3.617e-05 4.877e-05 0.00% Castro::construct_old_gravity() 10 3.295e-05 3.769e-05 4.521e-05 0.00% Castro::enforce_speed_limit() 62 2.604e-05 2.949e-05 4.031e-05 0.00% FabArrayBase::CPC::define() 2 2.137e-05 2.798e-05 3.866e-05 0.00% Castro::expand_state() 10 2.064e-05 2.66e-05 3.243e-05 0.00% Castro::post_timestep() 10 1.332e-05 1.641e-05 2.852e-05 0.00% Castro::check_for_nan() 20 2.257e-05 2.491e-05 2.788e-05 0.00% Castro::post_init() 1 1.556e-05 1.723e-05 2.191e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.34e-05 1.898e-05 2.178e-05 0.00% Gravity::set_mass_offset() 10 9.647e-06 1.144e-05 1.423e-05 0.00% Gravity::swapTimeLevels() 10 7.742e-06 9.89e-06 1.324e-05 0.00% Amr::initSubcycle() 1 9.671e-06 1.021e-05 1.104e-05 0.00% Castro::create_source_corrector() 10 7.446e-06 8.611e-06 1.03e-05 0.00% Castro::FluxRegCrseInit 10 5.652e-06 7.774e-06 9.814e-06 0.00% Castro::computeNewDt() 9 7.394e-06 8.276e-06 9.363e-06 0.00% Castro::retry_advance_ctu() 10 6.756e-06 7.377e-06 8.788e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.693e-06 6.541e-06 7.977e-06 0.00% Amr::InitializeInit() 1 1.897e-06 3.319e-06 5.982e-06 0.00% Castro::post_regrid() 1 1.723e-06 3.176e-06 5.772e-06 0.00% Castro::computeInitialDt() 2 3.312e-06 4.136e-06 5.199e-06 0.00% Amr::init() 1 1.522e-06 2.137e-06 3.068e-06 0.00% Castro::FluxRegFineAdd() 10 2.044e-06 2.34e-06 2.813e-06 0.00% Amr::initialInit() 1 1.418e-06 1.641e-06 1.813e-06 0.00% DistributionMapping::Distribute() 1 9.94e-07 1.266e-06 1.477e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.688 3.689 3.689 100.00% Amr::coarseTimeStep() 10 3.491 3.491 3.491 94.62% Amr::timeStep() 10 3.476 3.477 3.479 94.31% Castro::advance() 10 3.461 3.462 3.463 93.87% Castro::subcycle_advance_ctu() 10 3.376 3.386 3.396 92.06% Castro::do_advance_ctu() 10 3.376 3.386 3.396 92.06% Castro::construct_ctu_hydro_source() 10 2.613 2.618 2.622 71.08% Gravity::make_radial_gravity() 21 0.319 0.3298 0.3374 9.15% AmrLevel::FillPatch() 41 0.1903 0.2098 0.2252 6.10% Gravity::get_new_grav_vector() 11 0.2176 0.2199 0.2217 6.01% Castro::construct_old_gravity() 10 0.1887 0.1971 0.2046 5.55% Gravity::get_old_grav_vector() 10 0.1876 0.1963 0.2039 5.53% check_for_negative_density() 10 0.03459 0.1421 0.2025 5.49% FillPatchIterator::Initialize 41 0.1613 0.1785 0.1976 5.36% Castro::construct_new_gravity() 10 0.1934 0.1951 0.1964 5.32% Amr::init() 1 0.183 0.1832 0.1832 4.97% Castro::initialize_do_advance() 10 0.1568 0.1723 0.1809 4.90% Amr::initialInit() 1 0.1688 0.1689 0.1691 4.58% FillPatchIterator::FillFromLevel0() 41 0.1144 0.1356 0.1628 4.41% FillPatchSingleLevel 41 0.1143 0.1355 0.1627 4.41% Amr::InitializeInit() 1 0.06812 0.106 0.1405 3.81% Amr::defBaseLevel() 1 0.06812 0.106 0.1405 3.81% FabArray::ParallelCopy() 41 0.07824 0.1022 0.1305 3.54% Castro::expand_state() 10 0.1019 0.1176 0.1277 3.46% Castro::initData() 1 0.05143 0.08912 0.1238 3.36% Castro::clean_state() 62 0.1102 0.1155 0.1191 3.23% Castro::estTimeStep() 21 0.02246 0.0695 0.1143 3.10% Amr::FinalizeInit() 1 0.02838 0.06293 0.1009 2.74% Castro::do_old_sources() 10 0.09281 0.09572 0.09869 2.68% FabArray::ParallelCopy_finish() 41 0.03588 0.06088 0.09589 2.60% amrex::Copy() 193 0.06382 0.07808 0.08914 2.42% FabArray::setVal() 143 0.06238 0.07187 0.08521 2.31% Castro::initialize_advance() 10 0.06092 0.07168 0.08243 2.23% Castro::do_new_sources() 10 0.05935 0.06671 0.07869 2.13% Castro::computeInitialDt() 2 0.002134 0.03669 0.07456 2.02% Castro::computeTemp() 63 0.0624 0.06637 0.06937 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04516 0.04728 0.04902 1.33% Castro::reset_internal_energy(Fab) 1008 0.04487 0.04699 0.04875 1.32% Castro::normalize_species() 62 0.04103 0.0424 0.04402 1.19% FabArray::ParallelCopy_nowait() 41 0.03455 0.04122 0.04363 1.18% StateDataPhysBCFunct::() 41 0.0317 0.03321 0.03834 1.04% StateData::FillBoundary(geom) 41 0.03159 0.03309 0.03824 1.04% Castro::construct_new_source() 50 0.02852 0.03156 0.03581 0.97% Castro::finalize_do_advance() 10 0.01253 0.02507 0.0335 0.91% Gravity::interpolate_monopole_grav() 21 0.0281 0.02962 0.03227 0.87% Castro::construct_new_gravity_source() 10 0.02235 0.02549 0.02953 0.80% Castro::post_init() 1 0.02537 0.02573 0.02592 0.70% Amr::writePlotFile() 2 0.02392 0.02412 0.02426 0.66% Castro::post_timestep() 10 0.01511 0.01575 0.01644 0.45% VisMF::Write(FabArray) 2 0.01225 0.01288 0.0155 0.42% Castro::apply_source_to_state() 20 0.01121 0.01307 0.01371 0.37% FabArray::Saxpy() 20 0.01117 0.01302 0.01368 0.37% Castro::check_for_nan() 20 0.01017 0.01133 0.01208 0.33% MultiFab::contains_nan() 20 0.01014 0.0113 0.01206 0.33% FabArray::setDomainBndry() 41 0.007819 0.009771 0.01197 0.32% Castro::Castro() 1 0.01086 0.01117 0.0118 0.32% Castro::construct_old_source() 50 0.007955 0.009588 0.01034 0.28% Castro::construct_old_gravity_source() 10 0.0079 0.009517 0.01026 0.28% Castro::computeNewDt() 9 0.009108 0.009115 0.009123 0.25% Castro::enforce_min_density() 62 0.007117 0.00745 0.007811 0.21% Castro::initMFs() 1 0.006368 0.006523 0.007054 0.19% AmrLevel::AmrLevel(dm) 1 0.005414 0.005521 0.005779 0.16% StateData::define() 4 0.005401 0.005502 0.00576 0.16% Castro::swap_state_time_levels() 10 0.002011 0.004173 0.004882 0.13% Castro::finalize_advance() 10 0.002999 0.003732 0.004547 0.12% Castro::buildMetrics() 1 0.001684 0.001779 0.002124 0.06% Castro::post_regrid() 1 0.001489 0.001611 0.001967 0.05% Amr::InitAmr() 1 0.0002836 0.000305 0.0004119 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.155e-05 0.00012 0.0001363 0.00% DistributionMapping::LeastUsedCPUs() 1 6.862e-06 0.0001122 0.0001275 0.00% Castro::enforce_consistent_e() 1 7.549e-05 8.846e-05 9.916e-05 0.00% FabArrayBase::getCPC() 41 6.559e-05 7.82e-05 9.68e-05 0.00% Amr::writeSmallPlotFile() 1 3.037e-05 4.562e-05 6.475e-05 0.00% Castro::enforce_speed_limit() 62 2.604e-05 2.949e-05 4.031e-05 0.00% FabArrayBase::CPC::define() 2 2.137e-05 2.798e-05 3.866e-05 0.00% Gravity::set_mass_offset() 10 9.647e-06 1.144e-05 1.423e-05 0.00% Gravity::swapTimeLevels() 10 7.742e-06 9.89e-06 1.324e-05 0.00% Amr::initSubcycle() 1 9.671e-06 1.021e-05 1.104e-05 0.00% Castro::create_source_corrector() 10 7.446e-06 8.611e-06 1.03e-05 0.00% Castro::FluxRegCrseInit 10 5.652e-06 7.774e-06 9.814e-06 0.00% Castro::retry_advance_ctu() 10 6.756e-06 7.377e-06 8.788e-06 0.00% Castro::FluxRegFineAdd() 10 2.044e-06 2.34e-06 2.813e-06 0.00% DistributionMapping::Distribute() 1 9.94e-07 1.266e-06 1.477e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-4-ga7afcba3cffd) finalized