Initializing AMReX (23.11-5-gd36463103dae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-5-gd36463103dae) initialized Starting run at 06:23:31 UTC on 2023-11-08. Successfully read inputs file ... Castro git describe: 23.11-3-g640a8312a AMReX git describe: 23.11-5-gd36463103 Microphysics git describe: 23.11-1-g39a0f401 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017398105 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.380583333 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353711178 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324931797 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327760519 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342892806 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35214963 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309153636 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308999772 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30979909 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310388093 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009756763 seconds Ending run at 06:23:34 UTC on 2023-11-08. Run time = 3.543814859 Run time without initialization = 3.335678688 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3028 2.3436 2.3988 67.69% Gravity::make_radial_gravity() 21 0.3042 0.318 0.3316 9.36% Castro::initData() 1 0.05774 0.09698 0.1281 3.61% check_for_negative_density() 10 0.01858 0.07771 0.121 3.41% FabArray::ParallelCopy_finish() 41 0.04933 0.0725 0.09955 2.81% Castro::estTimeStep() 21 0.0404 0.06671 0.09943 2.81% amrex::Copy() 193 0.06691 0.07593 0.08631 2.44% FabArray::setVal() 143 0.06372 0.07228 0.08516 2.40% Castro::reset_internal_energy(Fab) 1008 0.04512 0.04864 0.05127 1.45% Castro::normalize_species() 62 0.04081 0.04326 0.04575 1.29% FabArray::ParallelCopy_nowait() 41 0.03421 0.03953 0.04216 1.19% FillPatchIterator::Initialize 41 0.0273 0.03224 0.03776 1.07% StateData::FillBoundary(geom) 41 0.03087 0.03296 0.03772 1.06% Gravity::interpolate_monopole_grav() 21 0.02864 0.02952 0.03113 0.88% Castro::construct_new_gravity_source() 10 0.02135 0.02451 0.0292 0.82% Castro::initialize_do_advance() 10 0.01208 0.01831 0.02307 0.65% Castro::computeTemp() 63 0.01846 0.02012 0.0219 0.62% VisMF::Write(FabArray) 2 0.01235 0.01313 0.01648 0.46% Castro::initialize_advance() 10 0.008811 0.01145 0.01479 0.42% FabArray::Saxpy() 20 0.01023 0.01258 0.01434 0.40% Amr::writePlotFile() 2 0.008479 0.01264 0.0142 0.40% MultiFab::contains_nan() 20 0.01036 0.01097 0.01172 0.33% FabArray::setDomainBndry() 41 0.006793 0.008875 0.01134 0.32% Castro::construct_old_gravity_source() 10 0.00686 0.009304 0.01003 0.28% Castro::initMFs() 1 0.006237 0.007616 0.009649 0.27% StateData::define() 4 0.005217 0.006296 0.008012 0.23% Castro::enforce_min_density() 62 0.007189 0.007518 0.00801 0.23% Castro::construct_new_source() 50 0.005527 0.006193 0.006791 0.19% Castro::swap_state_time_levels() 10 0.003766 0.0044 0.006114 0.17% main() 1 0.003167 0.004367 0.004834 0.14% Amr::coarseTimeStep() 10 0.001372 0.003141 0.004419 0.12% Gravity::get_new_grav_vector() 11 0.002823 0.003524 0.004176 0.12% Castro::buildMetrics() 1 0.001502 0.001824 0.002285 0.06% Gravity::get_old_grav_vector() 10 0.001488 0.001898 0.002215 0.06% Castro::finalize_do_advance() 10 0.0004625 0.001091 0.001362 0.04% AmrLevel::FillPatch() 41 0.0006676 0.0008222 0.001128 0.03% Amr::InitAmr() 1 0.0002723 0.0003562 0.0006417 0.02% Amr::timeStep() 10 0.0001437 0.0002127 0.0004586 0.01% DistributionMapping::LeastUsedCPUs() 1 7.931e-06 0.0003169 0.0004074 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002646 0.0002911 0.0003393 0.01% Castro::do_advance_ctu() 10 0.0001131 0.0001425 0.0002048 0.01% Castro::clean_state() 62 0.0001342 0.0001551 0.000179 0.01% FillPatchIterator::FillFromLevel0() 41 9.917e-05 0.0001211 0.0001555 0.00% Castro::enforce_consistent_e() 1 8.948e-05 0.0001097 0.000144 0.00% StateDataPhysBCFunct::() 41 8.768e-05 0.000108 0.0001245 0.00% Castro::do_new_sources() 10 4.697e-05 6.729e-05 0.0001119 0.00% Castro::do_old_sources() 10 5.934e-05 8.832e-05 0.0001109 0.00% Castro::finalize_advance() 10 7.397e-05 9.005e-05 0.0001094 0.00% FabArray::ParallelCopy() 41 5.924e-05 7.554e-05 9.645e-05 0.00% FillPatchSingleLevel 41 5.462e-05 7.224e-05 8.715e-05 0.00% Castro::construct_old_source() 50 4.455e-05 6.795e-05 8.414e-05 0.00% Amr::FinalizeInit() 1 4.628e-06 1.53e-05 8.115e-05 0.00% Castro::Castro() 1 5.813e-05 6.504e-05 7.933e-05 0.00% FabArrayBase::getCPC() 41 3.481e-05 5.442e-05 7.016e-05 0.00% Castro::apply_source_to_state() 20 3.668e-05 5.056e-05 6.458e-05 0.00% Amr::writeSmallPlotFile() 1 2.991e-05 4.701e-05 6e-05 0.00% Castro::advance() 10 3.836e-05 4.336e-05 5.115e-05 0.00% Castro::subcycle_advance_ctu() 10 3.644e-05 4.382e-05 5.039e-05 0.00% Castro::construct_new_gravity() 10 2.959e-05 3.703e-05 4.761e-05 0.00% Amr::defBaseLevel() 1 2.719e-05 3.495e-05 4.584e-05 0.00% FabArrayBase::CPC::define() 2 2.035e-05 2.845e-05 4.567e-05 0.00% Castro::construct_old_gravity() 10 2.94e-05 3.611e-05 4.206e-05 0.00% Castro::expand_state() 10 2.22e-05 2.639e-05 3.773e-05 0.00% Castro::enforce_speed_limit() 62 2.03e-05 2.75e-05 3.478e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.377e-05 2.158e-05 3.367e-05 0.00% Castro::check_for_nan() 20 2.203e-05 2.537e-05 2.912e-05 0.00% Castro::post_timestep() 10 1.302e-05 1.653e-05 2.344e-05 0.00% Castro::post_init() 1 1.619e-05 1.802e-05 2.057e-05 0.00% Gravity::set_mass_offset() 10 9.034e-06 1.376e-05 1.955e-05 0.00% Amr::initSubcycle() 1 1.031e-05 1.233e-05 1.66e-05 0.00% Castro::retry_advance_ctu() 10 6.314e-06 8.431e-06 1.396e-05 0.00% Gravity::swapTimeLevels() 10 6.479e-06 1.057e-05 1.365e-05 0.00% Castro::computeNewDt() 9 7.695e-06 8.564e-06 1.082e-05 0.00% Castro::create_source_corrector() 10 6.838e-06 8.873e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 6.866e-06 7.838e-06 8.685e-06 0.00% Amr::InitializeInit() 1 1.848e-06 3.647e-06 6.411e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.96e-06 4.925e-06 6.258e-06 0.00% Castro::post_regrid() 1 2.114e-06 3.59e-06 6.096e-06 0.00% Castro::computeInitialDt() 2 2.916e-06 4.317e-06 5.304e-06 0.00% Castro::FluxRegFineAdd() 10 2.269e-06 2.594e-06 3.097e-06 0.00% Amr::init() 1 1.912e-06 2.325e-06 2.913e-06 0.00% Amr::initialInit() 1 1.571e-06 1.87e-06 2.63e-06 0.00% DistributionMapping::Distribute() 1 9.48e-07 1.141e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 93.72% Amr::timeStep() 10 3.306 3.307 3.309 93.37% Castro::advance() 10 3.29 3.291 3.293 92.91% Castro::subcycle_advance_ctu() 10 3.202 3.211 3.218 90.81% Castro::do_advance_ctu() 10 3.201 3.211 3.218 90.81% Castro::construct_ctu_hydro_source() 10 2.437 2.442 2.445 68.99% Gravity::make_radial_gravity() 21 0.3187 0.3335 0.3457 9.76% AmrLevel::FillPatch() 41 0.1948 0.216 0.2341 6.61% Gravity::get_new_grav_vector() 11 0.2186 0.2201 0.2209 6.23% Castro::construct_old_gravity() 10 0.1881 0.2 0.2091 5.90% Gravity::get_old_grav_vector() 10 0.1875 0.1992 0.2085 5.88% Amr::init() 1 0.2073 0.2076 0.2077 5.86% FillPatchIterator::Initialize 41 0.1659 0.1866 0.2017 5.69% Castro::initialize_do_advance() 10 0.1696 0.18 0.1965 5.54% Amr::initialInit() 1 0.1884 0.1893 0.1898 5.36% Castro::construct_new_gravity() 10 0.1833 0.1843 0.1848 5.22% FillPatchIterator::FillFromLevel0() 41 0.1212 0.1455 0.1654 4.67% FillPatchSingleLevel 41 0.1211 0.1453 0.1653 4.66% Amr::InitializeInit() 1 0.07951 0.1191 0.1494 4.22% Amr::defBaseLevel() 1 0.07951 0.1191 0.1494 4.22% Castro::expand_state() 10 0.1083 0.1241 0.1377 3.89% FabArray::ParallelCopy() 41 0.08885 0.1122 0.1339 3.78% Castro::initData() 1 0.06199 0.1012 0.1319 3.72% Castro::clean_state() 62 0.1113 0.1189 0.126 3.56% check_for_negative_density() 10 0.01858 0.07771 0.121 3.41% Amr::FinalizeInit() 1 0.03999 0.07016 0.1097 3.09% Castro::do_old_sources() 10 0.0933 0.09746 0.1015 2.86% FabArray::ParallelCopy_finish() 41 0.04933 0.0725 0.09955 2.81% Castro::estTimeStep() 21 0.0404 0.06671 0.09943 2.81% amrex::Copy() 193 0.06691 0.07593 0.08631 2.44% Castro::initialize_advance() 10 0.06902 0.07611 0.08526 2.41% FabArray::setVal() 143 0.06372 0.07228 0.08516 2.40% Castro::do_new_sources() 10 0.05895 0.06561 0.07714 2.18% Castro::computeTemp() 63 0.06386 0.06906 0.07351 2.07% Castro::computeInitialDt() 2 0.002833 0.03308 0.07272 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04539 0.04893 0.05161 1.46% Castro::reset_internal_energy(Fab) 1008 0.04512 0.04864 0.05127 1.45% Castro::normalize_species() 62 0.04081 0.04326 0.04575 1.29% FabArray::ParallelCopy_nowait() 41 0.03427 0.03962 0.04225 1.19% StateDataPhysBCFunct::() 41 0.03097 0.03307 0.03783 1.07% StateData::FillBoundary(geom) 41 0.03087 0.03296 0.03772 1.06% Castro::post_init() 1 0.03623 0.03679 0.03763 1.06% Castro::construct_new_source() 50 0.02688 0.03071 0.03542 1.00% Castro::finalize_do_advance() 10 0.01384 0.0255 0.03278 0.93% Gravity::interpolate_monopole_grav() 21 0.02864 0.02952 0.03113 0.88% Castro::construct_new_gravity_source() 10 0.02135 0.02451 0.0292 0.82% Amr::writePlotFile() 2 0.02744 0.02817 0.02906 0.82% VisMF::Write(FabArray) 2 0.01235 0.01313 0.01648 0.46% Castro::post_timestep() 10 0.01522 0.01572 0.01622 0.46% Castro::apply_source_to_state() 20 0.01027 0.01263 0.0144 0.41% FabArray::Saxpy() 20 0.01023 0.01258 0.01434 0.40% Castro::Castro() 1 0.009274 0.01123 0.01382 0.39% Castro::check_for_nan() 20 0.01038 0.011 0.01174 0.33% MultiFab::contains_nan() 20 0.01036 0.01097 0.01172 0.33% FabArray::setDomainBndry() 41 0.006793 0.008875 0.01134 0.32% Castro::construct_old_source() 50 0.006904 0.009372 0.01011 0.29% Castro::construct_old_gravity_source() 10 0.00686 0.009304 0.01003 0.28% Castro::initMFs() 1 0.006237 0.007616 0.009649 0.27% Castro::computeNewDt() 9 0.009233 0.009243 0.009247 0.26% AmrLevel::AmrLevel(dm) 1 0.005231 0.006318 0.008038 0.23% StateData::define() 4 0.005217 0.006296 0.008012 0.23% Castro::enforce_min_density() 62 0.007189 0.007518 0.00801 0.23% Castro::swap_state_time_levels() 10 0.003766 0.0044 0.006114 0.17% Castro::finalize_advance() 10 0.003002 0.00408 0.005399 0.15% Castro::post_regrid() 1 0.001535 0.002034 0.003046 0.09% Castro::buildMetrics() 1 0.001625 0.00198 0.002523 0.07% Amr::InitAmr() 1 0.0002827 0.0003685 0.0006583 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.364e-05 0.0003229 0.0004147 0.01% DistributionMapping::LeastUsedCPUs() 1 7.931e-06 0.0003169 0.0004074 0.01% Castro::enforce_consistent_e() 1 8.948e-05 0.0001097 0.000144 0.00% FabArrayBase::getCPC() 41 6.369e-05 8.287e-05 0.0001158 0.00% Amr::writeSmallPlotFile() 1 2.991e-05 4.701e-05 6e-05 0.00% FabArrayBase::CPC::define() 2 2.035e-05 2.845e-05 4.567e-05 0.00% Castro::enforce_speed_limit() 62 2.03e-05 2.75e-05 3.478e-05 0.00% Gravity::set_mass_offset() 10 9.034e-06 1.376e-05 1.955e-05 0.00% Amr::initSubcycle() 1 1.031e-05 1.233e-05 1.66e-05 0.00% Castro::retry_advance_ctu() 10 6.314e-06 8.431e-06 1.396e-05 0.00% Gravity::swapTimeLevels() 10 6.479e-06 1.057e-05 1.365e-05 0.00% Castro::create_source_corrector() 10 6.838e-06 8.873e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 6.866e-06 7.838e-06 8.685e-06 0.00% Castro::FluxRegFineAdd() 10 2.269e-06 2.594e-06 3.097e-06 0.00% DistributionMapping::Distribute() 1 9.48e-07 1.141e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-5-gd36463103dae) finalized