Initializing AMReX (23.11-5-gd36463103dae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-5-gd36463103dae) initialized Starting run at 06:21:51 UTC on 2023-11-09. Successfully read inputs file ... Castro git describe: 23.11-3-g640a8312a AMReX git describe: 23.11-5-gd36463103 Microphysics git describe: 23.11-1-g39a0f401 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013876168 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352180377 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357773391 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330059129 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328510679 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329783851 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354158001 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315546789 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307024041 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309086969 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307792978 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010089925 seconds Ending run at 06:21:55 UTC on 2023-11-09. Run time = 3.491276504 Run time without initialization = 3.307696523 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.49 ... 3.491 ... 3.491 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2703 2.3402 2.3812 68.20% Gravity::make_radial_gravity() 21 0.2906 0.3027 0.3242 9.29% check_for_negative_density() 10 0.02161 0.0658 0.1391 3.98% Castro::initData() 1 0.04782 0.08686 0.1201 3.44% Castro::estTimeStep() 21 0.03761 0.06818 0.1117 3.20% FabArray::ParallelCopy_finish() 41 0.03815 0.06061 0.1058 3.03% amrex::Copy() 193 0.06301 0.08242 0.09961 2.85% FabArray::setVal() 143 0.06021 0.06977 0.07848 2.25% Castro::reset_internal_energy(Fab) 1008 0.04592 0.04767 0.04925 1.41% FabArray::ParallelCopy_nowait() 41 0.03358 0.04105 0.04316 1.24% Castro::normalize_species() 62 0.04072 0.04173 0.04303 1.23% FillPatchIterator::Initialize 41 0.02619 0.03329 0.03642 1.04% StateData::FillBoundary(geom) 41 0.02976 0.03296 0.03635 1.04% Gravity::interpolate_monopole_grav() 21 0.02835 0.02952 0.03214 0.92% Castro::construct_new_gravity_source() 10 0.02154 0.0251 0.03047 0.87% Castro::computeTemp() 63 0.0192 0.01984 0.02053 0.59% Castro::initialize_do_advance() 10 0.01092 0.01733 0.01905 0.55% Castro::initialize_advance() 10 0.00872 0.01204 0.01553 0.44% VisMF::Write(FabArray) 2 0.0118 0.01277 0.01509 0.43% FabArray::Saxpy() 20 0.01004 0.01239 0.01329 0.38% MultiFab::contains_nan() 20 0.01004 0.01126 0.01259 0.36% FabArray::setDomainBndry() 41 0.0067 0.01026 0.01253 0.36% Amr::writePlotFile() 2 0.006347 0.00863 0.01043 0.30% Castro::construct_old_gravity_source() 10 0.006498 0.009313 0.01007 0.29% Castro::enforce_min_density() 62 0.007072 0.007474 0.007887 0.23% Castro::initMFs() 1 0.00635 0.006847 0.007354 0.21% Castro::construct_new_source() 50 0.005455 0.006242 0.006741 0.19% StateData::define() 4 0.005253 0.005609 0.0059 0.17% main() 1 0.003202 0.004234 0.004939 0.14% Castro::swap_state_time_levels() 10 0.003147 0.004053 0.004373 0.13% Gravity::get_new_grav_vector() 11 0.00272 0.003582 0.004032 0.12% Amr::coarseTimeStep() 10 0.001013 0.002676 0.00347 0.10% Gravity::get_old_grav_vector() 10 0.001473 0.002113 0.002622 0.08% Castro::buildMetrics() 1 0.001522 0.001608 0.001692 0.05% Castro::finalize_do_advance() 10 0.000562 0.001029 0.001264 0.04% AmrLevel::FillPatch() 41 0.0006568 0.0007955 0.001019 0.03% Amr::InitAmr() 1 0.000282 0.0003247 0.0004583 0.01% Amr::timeStep() 10 0.000151 0.0002208 0.0004441 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002761 0.0002859 0.0002934 0.01% DistributionMapping::LeastUsedCPUs() 1 8.284e-06 0.0001439 0.0001937 0.01% Castro::do_advance_ctu() 10 0.0001055 0.0001434 0.0001755 0.01% Castro::clean_state() 62 0.0001349 0.0001518 0.0001656 0.00% StateDataPhysBCFunct::() 41 9.185e-05 0.0001146 0.0001596 0.00% FillPatchIterator::FillFromLevel0() 41 0.000104 0.000121 0.0001425 0.00% Castro::enforce_consistent_e() 1 7.671e-05 8.835e-05 0.0001151 0.00% Castro::finalize_advance() 10 7.382e-05 9.348e-05 0.0001145 0.00% Castro::do_old_sources() 10 6.651e-05 8.853e-05 0.0001063 0.00% Castro::construct_old_source() 50 4.565e-05 7.466e-05 0.0001038 0.00% Amr::FinalizeInit() 1 4.557e-06 1.707e-05 9.73e-05 0.00% Castro::Castro() 1 5.585e-05 7.219e-05 9.43e-05 0.00% Amr::writeSmallPlotFile() 1 3.651e-05 5.852e-05 8.977e-05 0.00% FillPatchSingleLevel 41 5.951e-05 6.899e-05 8.686e-05 0.00% FabArray::ParallelCopy() 41 6.532e-05 7.707e-05 8.467e-05 0.00% Castro::do_new_sources() 10 4.991e-05 6.336e-05 8.214e-05 0.00% FabArrayBase::getCPC() 41 3.761e-05 5.286e-05 6.641e-05 0.00% Castro::advance() 10 3.639e-05 4.578e-05 5.999e-05 0.00% Castro::subcycle_advance_ctu() 10 3.598e-05 4.756e-05 5.856e-05 0.00% Castro::apply_source_to_state() 20 2.996e-05 4.535e-05 5.607e-05 0.00% Castro::construct_new_gravity() 10 3.081e-05 3.887e-05 4.83e-05 0.00% Castro::construct_old_gravity() 10 2.997e-05 3.581e-05 4.143e-05 0.00% Castro::expand_state() 10 1.75e-05 2.67e-05 3.34e-05 0.00% Castro::enforce_speed_limit() 62 2.536e-05 2.793e-05 3.275e-05 0.00% Amr::defBaseLevel() 1 2.333e-05 2.648e-05 2.966e-05 0.00% Castro::check_for_nan() 20 2.27e-05 2.492e-05 2.936e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.84e-05 2.2e-05 2.918e-05 0.00% FabArrayBase::CPC::define() 2 2.213e-05 2.478e-05 2.88e-05 0.00% Castro::computeNewDt() 9 7.957e-06 1.487e-05 2.701e-05 0.00% Amr::initSubcycle() 1 9.966e-06 1.277e-05 2.545e-05 0.00% Castro::post_timestep() 10 1.275e-05 1.525e-05 2.278e-05 0.00% Castro::post_init() 1 1.428e-05 1.55e-05 1.776e-05 0.00% Gravity::set_mass_offset() 10 9.385e-06 1.148e-05 1.437e-05 0.00% Gravity::swapTimeLevels() 10 5.777e-06 1.06e-05 1.334e-05 0.00% Castro::create_source_corrector() 10 7.888e-06 9.043e-06 1.058e-05 0.00% Castro::FluxRegCrseInit 10 5.905e-06 7.265e-06 8.674e-06 0.00% Castro::retry_advance_ctu() 10 6.641e-06 7.396e-06 8.207e-06 0.00% Amr::init() 1 1.573e-06 2.632e-06 6.534e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.011e-06 4.844e-06 6.5e-06 0.00% Amr::InitializeInit() 1 1.827e-06 3.876e-06 6.117e-06 0.00% Castro::computeInitialDt() 2 2.675e-06 3.508e-06 4.471e-06 0.00% Castro::post_regrid() 1 1.862e-06 2.95e-06 3.897e-06 0.00% Amr::initialInit() 1 1.34e-06 1.878e-06 2.855e-06 0.00% Castro::FluxRegFineAdd() 10 1.993e-06 2.341e-06 2.678e-06 0.00% DistributionMapping::Distribute() 1 9.53e-07 1.116e-06 1.654e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.49 3.491 3.491 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 94.31% Amr::timeStep() 10 3.278 3.279 3.281 93.97% Castro::advance() 10 3.262 3.263 3.263 93.47% Castro::subcycle_advance_ctu() 10 3.18 3.186 3.197 91.57% Castro::do_advance_ctu() 10 3.18 3.186 3.197 91.57% Castro::construct_ctu_hydro_source() 10 2.424 2.427 2.434 69.71% Gravity::make_radial_gravity() 21 0.3077 0.3196 0.3377 9.67% AmrLevel::FillPatch() 41 0.1799 0.21 0.226 6.47% Gravity::get_new_grav_vector() 11 0.2144 0.2168 0.2179 6.24% Castro::construct_old_gravity() 10 0.1843 0.1919 0.2072 5.93% Gravity::get_old_grav_vector() 10 0.1837 0.1913 0.2066 5.92% FillPatchIterator::Initialize 41 0.1518 0.1786 0.2024 5.80% Castro::construct_new_gravity() 10 0.1913 0.1931 0.1943 5.57% Amr::init() 1 0.183 0.1831 0.1831 5.25% Castro::initialize_do_advance() 10 0.154 0.1661 0.1733 4.96% FillPatchIterator::FillFromLevel0() 41 0.1158 0.1351 0.1695 4.86% FillPatchSingleLevel 41 0.1156 0.135 0.1694 4.85% Amr::initialInit() 1 0.1689 0.1692 0.1693 4.85% Amr::InitializeInit() 1 0.06799 0.1075 0.1416 4.06% Amr::defBaseLevel() 1 0.06798 0.1075 0.1416 4.06% FabArray::ParallelCopy() 41 0.08127 0.1018 0.1395 4.00% check_for_negative_density() 10 0.02161 0.0658 0.1391 3.98% Castro::initData() 1 0.05196 0.09081 0.1241 3.55% Castro::clean_state() 62 0.1136 0.1163 0.1202 3.44% Castro::expand_state() 10 0.09941 0.1113 0.1168 3.35% Castro::estTimeStep() 21 0.03761 0.06818 0.1117 3.20% Castro::do_old_sources() 10 0.09135 0.1021 0.1099 3.15% FabArray::ParallelCopy_finish() 41 0.03815 0.06061 0.1058 3.03% Amr::FinalizeInit() 1 0.02757 0.06168 0.1012 2.90% amrex::Copy() 193 0.06301 0.08242 0.09961 2.85% Castro::initialize_advance() 10 0.06178 0.07289 0.07919 2.27% FabArray::setVal() 143 0.06021 0.06977 0.07848 2.25% Castro::computeInitialDt() 2 0.002229 0.03646 0.07596 2.18% Castro::do_new_sources() 10 0.05899 0.06419 0.07372 2.11% Castro::computeTemp() 63 0.06549 0.06779 0.07 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04621 0.04796 0.04955 1.42% Castro::reset_internal_energy(Fab) 1008 0.04592 0.04767 0.04925 1.41% FabArray::ParallelCopy_nowait() 41 0.03364 0.04113 0.04325 1.24% Castro::normalize_species() 62 0.04072 0.04173 0.04303 1.23% Castro::construct_new_source() 50 0.027 0.03134 0.03712 1.06% StateDataPhysBCFunct::() 41 0.02985 0.03308 0.03646 1.04% StateData::FillBoundary(geom) 41 0.02976 0.03296 0.03635 1.04% Gravity::interpolate_monopole_grav() 21 0.02835 0.02952 0.03214 0.92% Castro::construct_new_gravity_source() 10 0.02154 0.0251 0.03047 0.87% Castro::finalize_do_advance() 10 0.01256 0.02292 0.02831 0.81% Castro::post_init() 1 0.02447 0.02474 0.02498 0.72% Amr::writePlotFile() 2 0.02396 0.02413 0.0244 0.70% Castro::post_timestep() 10 0.01542 0.01604 0.01721 0.49% VisMF::Write(FabArray) 2 0.0118 0.01277 0.01509 0.43% Castro::apply_source_to_state() 20 0.01007 0.01244 0.01334 0.38% FabArray::Saxpy() 20 0.01004 0.01239 0.01329 0.38% Castro::check_for_nan() 20 0.01006 0.01129 0.01261 0.36% MultiFab::contains_nan() 20 0.01004 0.01126 0.01259 0.36% FabArray::setDomainBndry() 41 0.0067 0.01026 0.01253 0.36% Castro::Castro() 1 0.01004 0.01085 0.01159 0.33% Castro::construct_old_source() 50 0.006544 0.009387 0.01018 0.29% Castro::construct_old_gravity_source() 10 0.006498 0.009313 0.01007 0.29% Castro::computeNewDt() 9 0.009811 0.009845 0.009866 0.28% Castro::enforce_min_density() 62 0.007072 0.007474 0.007887 0.23% Castro::initMFs() 1 0.00635 0.006847 0.007354 0.21% AmrLevel::AmrLevel(dm) 1 0.005276 0.005631 0.00592 0.17% StateData::define() 4 0.005253 0.005609 0.0059 0.17% Castro::swap_state_time_levels() 10 0.003147 0.004053 0.004373 0.13% Castro::finalize_advance() 10 0.003095 0.00336 0.003716 0.11% Castro::buildMetrics() 1 0.00164 0.001751 0.001863 0.05% Castro::post_regrid() 1 0.00157 0.001637 0.001702 0.05% Amr::InitAmr() 1 0.0002926 0.0003375 0.0004698 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.332e-05 0.0001499 0.0002013 0.01% DistributionMapping::LeastUsedCPUs() 1 8.284e-06 0.0001439 0.0001937 0.01% Castro::enforce_consistent_e() 1 7.671e-05 8.835e-05 0.0001151 0.00% FabArrayBase::getCPC() 41 6.206e-05 7.764e-05 9.482e-05 0.00% Amr::writeSmallPlotFile() 1 3.651e-05 5.852e-05 8.977e-05 0.00% Castro::enforce_speed_limit() 62 2.536e-05 2.793e-05 3.275e-05 0.00% FabArrayBase::CPC::define() 2 2.213e-05 2.478e-05 2.88e-05 0.00% Amr::initSubcycle() 1 9.966e-06 1.277e-05 2.545e-05 0.00% Gravity::set_mass_offset() 10 9.385e-06 1.148e-05 1.437e-05 0.00% Gravity::swapTimeLevels() 10 5.777e-06 1.06e-05 1.334e-05 0.00% Castro::create_source_corrector() 10 7.888e-06 9.043e-06 1.058e-05 0.00% Castro::FluxRegCrseInit 10 5.905e-06 7.265e-06 8.674e-06 0.00% Castro::retry_advance_ctu() 10 6.641e-06 7.396e-06 8.207e-06 0.00% Castro::FluxRegFineAdd() 10 1.993e-06 2.341e-06 2.678e-06 0.00% DistributionMapping::Distribute() 1 9.53e-07 1.116e-06 1.654e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-5-gd36463103dae) finalized