Initializing AMReX (23.11-8-gb7408ea6e8fe)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-8-gb7408ea6e8fe) initialized Starting run at 06:35:40 UTC on 2023-11-14. Successfully read inputs file ... Castro git describe: 23.11-5-gedad6c8f7 AMReX git describe: 23.11-8-gb7408ea6e Microphysics git describe: 23.11-5-g3fe63e82 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014113969 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356375786 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34397308 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33171495 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333199121 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333026293 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360554839 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315529706 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306237631 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.327387155 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307897295 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009680863 seconds Ending run at 06:35:44 UTC on 2023-11-14. Run time = 3.513038973 Run time without initialization = 3.331230844 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.512 ... 3.513 ... 3.513 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2806 2.3588 2.3957 68.19% Gravity::make_radial_gravity() 21 0.294 0.3026 0.3179 9.05% check_for_negative_density() 10 0.02639 0.0697 0.1547 4.40% Castro::initData() 1 0.05872 0.09507 0.1211 3.45% FabArray::ParallelCopy_finish() 41 0.03707 0.0619 0.1039 2.96% amrex::Copy() 193 0.06222 0.08216 0.09901 2.82% Castro::estTimeStep() 21 0.02525 0.05629 0.09005 2.56% FabArray::setVal() 143 0.06126 0.06994 0.07799 2.22% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04793 0.04942 1.41% FabArray::ParallelCopy_nowait() 41 0.03378 0.04128 0.04345 1.24% Castro::normalize_species() 62 0.04121 0.04184 0.0425 1.21% StateData::FillBoundary(geom) 41 0.03051 0.03321 0.03784 1.08% FillPatchIterator::Initialize 41 0.02633 0.03353 0.03705 1.05% Gravity::interpolate_monopole_grav() 21 0.02744 0.0296 0.03125 0.89% Castro::construct_new_gravity_source() 10 0.02193 0.02451 0.02827 0.80% Castro::computeTemp() 63 0.01968 0.02011 0.02054 0.58% Castro::initialize_do_advance() 10 0.0111 0.01747 0.01904 0.54% Castro::initialize_advance() 10 0.008702 0.01213 0.01558 0.44% VisMF::Write(FabArray) 2 0.0116 0.0125 0.0149 0.42% FabArray::Saxpy() 20 0.01003 0.01244 0.01398 0.40% MultiFab::contains_nan() 20 0.01067 0.01168 0.01304 0.37% FabArray::setDomainBndry() 41 0.006966 0.009976 0.01199 0.34% Amr::writePlotFile() 2 0.006303 0.00875 0.01038 0.30% Castro::construct_old_gravity_source() 10 0.006491 0.009297 0.01021 0.29% Castro::initMFs() 1 0.006298 0.007478 0.009856 0.28% StateData::define() 4 0.005221 0.006115 0.008012 0.23% Castro::enforce_min_density() 62 0.007132 0.007494 0.007809 0.22% Castro::construct_new_source() 50 0.005779 0.00631 0.006742 0.19% main() 1 0.004056 0.004668 0.004981 0.14% Castro::swap_state_time_levels() 10 0.003073 0.00409 0.004439 0.13% Gravity::get_new_grav_vector() 11 0.002762 0.003581 0.003949 0.11% Gravity::get_old_grav_vector() 10 0.001491 0.002038 0.00248 0.07% Castro::buildMetrics() 1 0.001516 0.001775 0.002343 0.07% Amr::coarseTimeStep() 10 0.001007 0.001715 0.002162 0.06% Castro::finalize_do_advance() 10 0.0005192 0.001104 0.001411 0.04% AmrLevel::FillPatch() 41 0.0007827 0.0009604 0.001285 0.04% Amr::InitAmr() 1 0.000269 0.000347 0.0004859 0.01% Amr::timeStep() 10 0.0001461 0.0002091 0.0003997 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002779 0.0002917 0.0003093 0.01% DistributionMapping::LeastUsedCPUs() 1 8.604e-06 0.0001688 0.0002565 0.01% Castro::do_advance_ctu() 10 0.0001246 0.0001445 0.0001624 0.00% Castro::clean_state() 62 0.0001345 0.0001504 0.0001614 0.00% Castro::enforce_consistent_e() 1 8.245e-05 9.748e-05 0.0001418 0.00% Castro::finalize_advance() 10 7.809e-05 9.542e-05 0.0001221 0.00% FillPatchIterator::FillFromLevel0() 41 9.536e-05 0.0001098 0.0001199 0.00% StateDataPhysBCFunct::() 41 9.294e-05 0.0001073 0.0001173 0.00% Castro::do_old_sources() 10 6.572e-05 8.49e-05 9.382e-05 0.00% Castro::do_new_sources() 10 5.182e-05 6.578e-05 9.215e-05 0.00% FabArray::ParallelCopy() 41 6.966e-05 8.151e-05 8.89e-05 0.00% Castro::construct_old_source() 50 4.307e-05 6.908e-05 8.757e-05 0.00% Castro::Castro() 1 5.366e-05 6.358e-05 8.438e-05 0.00% Amr::FinalizeInit() 1 4.152e-06 1.414e-05 7.502e-05 0.00% Castro::apply_source_to_state() 20 3.604e-05 4.581e-05 7.371e-05 0.00% FillPatchSingleLevel 41 6.131e-05 6.669e-05 7.304e-05 0.00% Castro::advance() 10 2.942e-05 4.696e-05 6.842e-05 0.00% FabArrayBase::getCPC() 41 4.078e-05 5.109e-05 6.811e-05 0.00% Amr::writeSmallPlotFile() 1 3.086e-05 5.016e-05 6.563e-05 0.00% Castro::construct_old_gravity() 10 2.996e-05 4.07e-05 5.685e-05 0.00% Castro::subcycle_advance_ctu() 10 3.863e-05 4.603e-05 5.039e-05 0.00% Amr::defBaseLevel() 1 2.448e-05 3.312e-05 4.889e-05 0.00% Castro::construct_new_gravity() 10 3.162e-05 3.635e-05 4.471e-05 0.00% FabArrayBase::CPC::define() 2 2.251e-05 2.636e-05 3.519e-05 0.00% Castro::expand_state() 10 1.812e-05 2.647e-05 3.299e-05 0.00% Castro::enforce_speed_limit() 62 2.554e-05 2.826e-05 3.112e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.568e-05 2.324e-05 3.063e-05 0.00% Castro::check_for_nan() 20 2.317e-05 2.541e-05 2.845e-05 0.00% Castro::post_timestep() 10 1.229e-05 1.555e-05 2.644e-05 0.00% Castro::post_init() 1 1.526e-05 1.721e-05 1.935e-05 0.00% Castro::create_source_corrector() 10 7.208e-06 1.021e-05 1.738e-05 0.00% Amr::initSubcycle() 1 9.8e-06 1.207e-05 1.639e-05 0.00% Gravity::set_mass_offset() 10 8.473e-06 1.056e-05 1.309e-05 0.00% Castro::computeNewDt() 9 7.664e-06 8.997e-06 1.139e-05 0.00% Gravity::swapTimeLevels() 10 7.885e-06 9.598e-06 1.11e-05 0.00% Castro::FluxRegCrseInit 10 6.171e-06 7.659e-06 1.065e-05 0.00% Castro::retry_advance_ctu() 10 6.373e-06 7.233e-06 8.325e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.607e-06 4.462e-06 6.453e-06 0.00% Castro::computeInitialDt() 2 3.274e-06 4.241e-06 5.81e-06 0.00% Amr::InitializeInit() 1 1.676e-06 2.427e-06 5.157e-06 0.00% Castro::post_regrid() 1 1.553e-06 2.869e-06 4.514e-06 0.00% Amr::init() 1 1.939e-06 2.357e-06 2.881e-06 0.00% Castro::FluxRegFineAdd() 10 1.866e-06 2.158e-06 2.573e-06 0.00% Amr::initialInit() 1 1.569e-06 1.842e-06 2.05e-06 0.00% DistributionMapping::Distribute() 1 8.23e-07 1.069e-06 1.346e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.513 3.513 100.00% Amr::coarseTimeStep() 10 3.317 3.317 3.317 94.41% Amr::timeStep() 10 3.304 3.305 3.305 94.09% Castro::advance() 10 3.288 3.289 3.289 93.62% Castro::subcycle_advance_ctu() 10 3.207 3.212 3.222 91.70% Castro::do_advance_ctu() 10 3.207 3.212 3.222 91.70% Castro::construct_ctu_hydro_source() 10 2.443 2.45 2.456 69.91% Gravity::make_radial_gravity() 21 0.3106 0.319 0.3308 9.42% AmrLevel::FillPatch() 41 0.1886 0.2116 0.2267 6.45% Gravity::get_new_grav_vector() 11 0.2146 0.2157 0.2171 6.18% FillPatchIterator::Initialize 41 0.1598 0.1803 0.2036 5.79% Castro::construct_old_gravity() 10 0.1855 0.1929 0.2023 5.76% Gravity::get_old_grav_vector() 10 0.1848 0.1923 0.2016 5.74% Castro::construct_new_gravity() 10 0.1913 0.1926 0.1934 5.50% Amr::init() 1 0.1811 0.1813 0.1814 5.16% Castro::initialize_do_advance() 10 0.1571 0.1679 0.1749 4.98% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1368 0.1688 4.80% FillPatchSingleLevel 41 0.1127 0.1367 0.1686 4.80% Amr::initialInit() 1 0.1668 0.167 0.1672 4.76% check_for_negative_density() 10 0.02639 0.0697 0.1547 4.40% Amr::InitializeInit() 1 0.07988 0.1167 0.1403 3.99% Amr::defBaseLevel() 1 0.07987 0.1167 0.1403 3.99% FabArray::ParallelCopy() 41 0.07953 0.1033 0.1379 3.92% Castro::initData() 1 0.06287 0.09913 0.1249 3.55% Castro::clean_state() 62 0.1149 0.1168 0.1198 3.41% Castro::expand_state() 10 0.1008 0.1123 0.1195 3.40% Castro::do_old_sources() 10 0.09462 0.1029 0.1093 3.11% FabArray::ParallelCopy_finish() 41 0.03707 0.0619 0.1039 2.96% amrex::Copy() 193 0.06222 0.08216 0.09901 2.82% Castro::estTimeStep() 21 0.02525 0.05629 0.09005 2.56% Amr::FinalizeInit() 1 0.02698 0.05038 0.08706 2.48% Castro::initialize_advance() 10 0.06302 0.07356 0.07807 2.22% FabArray::setVal() 143 0.06126 0.06994 0.07799 2.22% Castro::do_new_sources() 10 0.06014 0.06391 0.07185 2.05% Castro::computeTemp() 63 0.06686 0.06833 0.07027 2.00% Castro::computeInitialDt() 2 0.002158 0.02569 0.06238 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04697 0.04822 0.04973 1.42% Castro::reset_internal_energy(Fab) 1008 0.04666 0.04793 0.04942 1.41% FabArray::ParallelCopy_nowait() 41 0.03387 0.04135 0.04352 1.24% Castro::normalize_species() 62 0.04121 0.04184 0.0425 1.21% StateDataPhysBCFunct::() 41 0.03061 0.03332 0.03794 1.08% StateData::FillBoundary(geom) 41 0.03051 0.03321 0.03784 1.08% Castro::construct_new_source() 50 0.02771 0.03082 0.03501 1.00% Gravity::interpolate_monopole_grav() 21 0.02744 0.0296 0.03125 0.89% Castro::construct_new_gravity_source() 10 0.02193 0.02451 0.02827 0.80% Castro::finalize_do_advance() 10 0.01334 0.02265 0.02749 0.78% Castro::post_init() 1 0.02409 0.02423 0.02447 0.70% Amr::writePlotFile() 2 0.02388 0.02401 0.02417 0.69% Castro::post_timestep() 10 0.01564 0.01587 0.0162 0.46% VisMF::Write(FabArray) 2 0.0116 0.0125 0.0149 0.42% Castro::apply_source_to_state() 20 0.01008 0.01248 0.01406 0.40% Castro::Castro() 1 0.009866 0.01118 0.01402 0.40% FabArray::Saxpy() 20 0.01003 0.01244 0.01398 0.40% Castro::check_for_nan() 20 0.0107 0.01171 0.01306 0.37% MultiFab::contains_nan() 20 0.01067 0.01168 0.01304 0.37% FabArray::setDomainBndry() 41 0.006966 0.009976 0.01199 0.34% Castro::construct_old_source() 50 0.006534 0.009366 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006491 0.009297 0.01021 0.29% Castro::initMFs() 1 0.006298 0.007478 0.009856 0.28% Castro::computeNewDt() 9 0.009059 0.00907 0.009076 0.26% AmrLevel::AmrLevel(dm) 1 0.005237 0.006138 0.008039 0.23% StateData::define() 4 0.005221 0.006115 0.008012 0.23% Castro::enforce_min_density() 62 0.007132 0.007494 0.007809 0.22% Castro::swap_state_time_levels() 10 0.003073 0.00409 0.004439 0.13% Castro::finalize_advance() 10 0.003146 0.003336 0.003561 0.10% Castro::buildMetrics() 1 0.001628 0.00192 0.002553 0.07% Castro::post_regrid() 1 0.001492 0.001594 0.001658 0.05% Amr::InitAmr() 1 0.0002793 0.0003591 0.0005023 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.416e-05 0.0001743 0.0002642 0.01% DistributionMapping::LeastUsedCPUs() 1 8.604e-06 0.0001688 0.0002565 0.01% Castro::enforce_consistent_e() 1 8.245e-05 9.748e-05 0.0001418 0.00% FabArrayBase::getCPC() 41 6.585e-05 7.745e-05 0.0001018 0.00% Amr::writeSmallPlotFile() 1 3.086e-05 5.016e-05 6.563e-05 0.00% FabArrayBase::CPC::define() 2 2.251e-05 2.636e-05 3.519e-05 0.00% Castro::enforce_speed_limit() 62 2.554e-05 2.826e-05 3.112e-05 0.00% Castro::create_source_corrector() 10 7.208e-06 1.021e-05 1.738e-05 0.00% Amr::initSubcycle() 1 9.8e-06 1.207e-05 1.639e-05 0.00% Gravity::set_mass_offset() 10 8.473e-06 1.056e-05 1.309e-05 0.00% Gravity::swapTimeLevels() 10 7.885e-06 9.598e-06 1.11e-05 0.00% Castro::FluxRegCrseInit 10 6.171e-06 7.659e-06 1.065e-05 0.00% Castro::retry_advance_ctu() 10 6.373e-06 7.233e-06 8.325e-06 0.00% Castro::FluxRegFineAdd() 10 1.866e-06 2.158e-06 2.573e-06 0.00% DistributionMapping::Distribute() 1 8.23e-07 1.069e-06 1.346e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-8-gb7408ea6e8fe) finalized