Initializing AMReX (23.11-11-ga9da2a54de5d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-11-ga9da2a54de5d) initialized Starting run at 06:20:58 UTC on 2023-11-16. Successfully read inputs file ... Castro git describe: 23.11-6-gb720d68fa AMReX git describe: 23.11-11-ga9da2a54d Microphysics git describe: 23.11-8-gbbb78e68 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015254815 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360010387 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.371212058 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327767766 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332877137 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360522287 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330441369 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308909451 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310935237 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309774567 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310764359 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.511566896 seconds Ending run at 06:21:02 UTC on 2023-11-16. Run time = 4.083725952 Run time without initialization = 3.840839523 Average number of zones advanced per microsecond: 0.683 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.083 ... 4.083 ... 4.084 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3487 2.3805 2.4082 58.97% Amr::writePlotFile() 2 0.5084 0.5106 0.5113 12.52% Gravity::make_radial_gravity() 21 0.3032 0.3169 0.3296 8.07% Castro::initData() 1 0.04883 0.09748 0.1649 4.04% Castro::estTimeStep() 21 0.0252 0.106 0.1496 3.66% check_for_negative_density() 10 0.0342 0.0642 0.09847 2.41% amrex::Copy() 193 0.06301 0.07671 0.08713 2.13% FabArray::ParallelCopy_finish() 41 0.03578 0.05381 0.08692 2.13% FabArray::setVal() 143 0.05989 0.06823 0.07783 1.91% Castro::reset_internal_energy(Fab) 1008 0.04534 0.0485 0.05043 1.23% Castro::normalize_species() 62 0.04178 0.04249 0.04375 1.07% FabArray::ParallelCopy_nowait() 41 0.03649 0.04125 0.04319 1.06% StateData::FillBoundary(geom) 41 0.02902 0.033 0.03561 0.87% FillPatchIterator::Initialize 41 0.02768 0.03288 0.03525 0.86% Gravity::interpolate_monopole_grav() 21 0.02732 0.02935 0.03075 0.75% Castro::construct_new_gravity_source() 10 0.02231 0.02485 0.02794 0.68% Castro::computeTemp() 63 0.01778 0.01998 0.02116 0.52% Castro::initialize_do_advance() 10 0.01226 0.01799 0.02107 0.52% VisMF::Write(FabArray) 2 0.01292 0.01348 0.01597 0.39% Castro::initialize_advance() 10 0.004189 0.0102 0.01393 0.34% FabArray::Saxpy() 20 0.01124 0.01257 0.0136 0.33% MultiFab::contains_nan() 20 0.01004 0.01136 0.01223 0.30% FabArray::setDomainBndry() 41 0.006786 0.009684 0.01182 0.29% Castro::construct_old_gravity_source() 10 0.007833 0.009627 0.01046 0.26% Castro::initMFs() 1 0.006351 0.007532 0.01026 0.25% StateData::define() 4 0.005221 0.006066 0.007996 0.20% Castro::enforce_min_density() 62 0.007193 0.007547 0.007882 0.19% Castro::construct_new_source() 50 0.005676 0.006204 0.006391 0.16% Gravity::get_new_grav_vector() 11 0.003063 0.004102 0.006018 0.15% main() 1 0.004362 0.004964 0.005326 0.13% Castro::swap_state_time_levels() 10 0.003114 0.004225 0.004982 0.12% Amr::coarseTimeStep() 10 0.001513 0.002384 0.003672 0.09% Gravity::get_old_grav_vector() 10 0.001586 0.00206 0.002349 0.06% Castro::buildMetrics() 1 0.001469 0.001725 0.002311 0.06% Castro::finalize_do_advance() 10 0.0005182 0.001206 0.00157 0.04% AmrLevel::FillPatch() 41 0.0008139 0.0009398 0.001035 0.03% Amr::InitAmr() 1 0.0002675 0.0003461 0.0004939 0.01% Amr::timeStep() 10 0.0001658 0.0002152 0.0003761 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002697 0.000295 0.000357 0.01% DistributionMapping::LeastUsedCPUs() 1 6.462e-06 0.000178 0.0002625 0.01% Castro::clean_state() 62 0.0001442 0.0001528 0.0001714 0.00% StateDataPhysBCFunct::() 41 9.534e-05 0.0001173 0.0001473 0.00% Castro::do_advance_ctu() 10 0.0001266 0.0001381 0.0001462 0.00% Castro::enforce_consistent_e() 1 7.885e-05 9.907e-05 0.0001384 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001078 0.0001156 0.0001317 0.00% Castro::finalize_advance() 10 7.587e-05 9.125e-05 0.000112 0.00% Castro::do_old_sources() 10 7.958e-05 9.249e-05 0.0001115 0.00% Castro::construct_old_source() 50 5.338e-05 7.481e-05 0.0001112 0.00% FabArray::ParallelCopy() 41 7.176e-05 8.476e-05 0.0001011 0.00% Castro::Castro() 1 5.284e-05 6.679e-05 8.662e-05 0.00% FabArrayBase::getCPC() 41 4.119e-05 5.287e-05 7.784e-05 0.00% FillPatchSingleLevel 41 6.116e-05 6.873e-05 7.775e-05 0.00% Castro::do_new_sources() 10 6.012e-05 6.633e-05 7.241e-05 0.00% Amr::FinalizeInit() 1 4.096e-06 1.327e-05 7.002e-05 0.00% Castro::apply_source_to_state() 20 3.737e-05 4.832e-05 6.26e-05 0.00% Amr::writeSmallPlotFile() 1 3.689e-05 4.756e-05 6.196e-05 0.00% Castro::subcycle_advance_ctu() 10 3.958e-05 4.772e-05 5.162e-05 0.00% Castro::advance() 10 3.553e-05 4.193e-05 4.68e-05 0.00% Castro::construct_old_gravity() 10 3.244e-05 3.819e-05 4.596e-05 0.00% Castro::construct_new_gravity() 10 3.193e-05 3.69e-05 4.094e-05 0.00% Castro::enforce_speed_limit() 62 2.612e-05 2.849e-05 3.667e-05 0.00% Amr::defBaseLevel() 1 2.322e-05 3.126e-05 3.551e-05 0.00% Castro::expand_state() 10 2.193e-05 2.603e-05 3.135e-05 0.00% Castro::check_for_nan() 20 2.355e-05 2.557e-05 2.84e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.479e-05 2.77e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.379e-05 1.908e-05 2.633e-05 0.00% Castro::post_init() 1 1.46e-05 1.825e-05 2.257e-05 0.00% Amr::initSubcycle() 1 9.923e-06 1.206e-05 1.762e-05 0.00% Castro::post_timestep() 10 1.23e-05 1.373e-05 1.577e-05 0.00% Gravity::set_mass_offset() 10 8.364e-06 1.108e-05 1.421e-05 0.00% Gravity::swapTimeLevels() 10 7.405e-06 9.764e-06 1.385e-05 0.00% Castro::create_source_corrector() 10 7.406e-06 9.115e-06 1.116e-05 0.00% Castro::computeNewDt() 9 7.87e-06 8.785e-06 1.108e-05 0.00% Castro::FluxRegCrseInit 10 6.594e-06 7.482e-06 8.88e-06 0.00% Castro::retry_advance_ctu() 10 6.666e-06 7.196e-06 7.616e-06 0.00% Amr::InitializeInit() 1 1.806e-06 3.219e-06 7.488e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.26e-06 5.217e-06 7.33e-06 0.00% Castro::post_regrid() 1 2.558e-06 3.719e-06 5.575e-06 0.00% Castro::computeInitialDt() 2 3.537e-06 4.431e-06 5.516e-06 0.00% Amr::init() 1 1.834e-06 2.284e-06 2.693e-06 0.00% Castro::FluxRegFineAdd() 10 1.947e-06 2.247e-06 2.581e-06 0.00% Amr::initialInit() 1 1.47e-06 1.904e-06 2.449e-06 0.00% DistributionMapping::Distribute() 1 8.89e-07 1.172e-06 1.761e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.083 4.083 4.084 100.00% Amr::coarseTimeStep() 10 3.324 3.324 3.324 81.39% Amr::timeStep() 10 3.31 3.311 3.312 81.10% Castro::advance() 10 3.294 3.295 3.296 80.70% Castro::subcycle_advance_ctu() 10 3.214 3.221 3.232 79.14% Castro::do_advance_ctu() 10 3.214 3.221 3.232 79.14% Castro::construct_ctu_hydro_source() 10 2.464 2.466 2.469 60.47% Amr::writePlotFile() 2 0.5263 0.5268 0.5271 12.91% Gravity::make_radial_gravity() 21 0.3192 0.3326 0.3424 8.38% Amr::init() 1 0.2422 0.2424 0.2425 5.94% Gravity::get_new_grav_vector() 11 0.2251 0.2285 0.2318 5.68% Amr::initialInit() 1 0.2269 0.2273 0.2276 5.57% AmrLevel::FillPatch() 41 0.1827 0.2021 0.2151 5.27% Castro::construct_new_gravity() 10 0.197 0.1985 0.2006 4.91% Castro::construct_old_gravity() 10 0.1808 0.1879 0.1964 4.81% Gravity::get_old_grav_vector() 10 0.1801 0.1873 0.1958 4.80% Amr::InitializeInit() 1 0.06808 0.1193 0.1923 4.71% Amr::defBaseLevel() 1 0.06807 0.1193 0.1923 4.71% FillPatchIterator::Initialize 41 0.1536 0.1711 0.1911 4.68% Castro::initialize_do_advance() 10 0.1593 0.1704 0.1796 4.40% Castro::initData() 1 0.05256 0.1017 0.1698 4.16% Amr::FinalizeInit() 1 0.03451 0.108 0.1589 3.89% FillPatchIterator::FillFromLevel0() 41 0.1104 0.1285 0.1567 3.84% FillPatchSingleLevel 41 0.1103 0.1284 0.1565 3.83% Castro::estTimeStep() 21 0.0252 0.106 0.1496 3.66% Castro::computeInitialDt() 2 0.002943 0.07615 0.1273 3.12% FabArray::ParallelCopy() 41 0.07731 0.09522 0.1236 3.03% Castro::expand_state() 10 0.1027 0.1148 0.1233 3.02% Castro::clean_state() 62 0.1123 0.1179 0.1217 2.98% check_for_negative_density() 10 0.0342 0.0642 0.09847 2.41% Castro::do_old_sources() 10 0.09082 0.09526 0.09723 2.38% amrex::Copy() 193 0.06301 0.07671 0.08713 2.13% FabArray::ParallelCopy_finish() 41 0.03578 0.05381 0.08692 2.13% FabArray::setVal() 143 0.05989 0.06823 0.07783 1.91% Castro::initialize_advance() 10 0.05885 0.07004 0.07776 1.90% Castro::do_new_sources() 10 0.05945 0.06538 0.07374 1.81% Castro::computeTemp() 63 0.06339 0.06877 0.07152 1.75% Castro::reset_internal_energy(MultiFab) 63 0.04561 0.04879 0.05072 1.24% Castro::reset_internal_energy(Fab) 1008 0.04534 0.0485 0.05043 1.23% Castro::normalize_species() 62 0.04178 0.04249 0.04375 1.07% FabArray::ParallelCopy_nowait() 41 0.0366 0.04133 0.04328 1.06% StateDataPhysBCFunct::() 41 0.02912 0.03312 0.0357 0.87% StateData::FillBoundary(geom) 41 0.02902 0.033 0.03561 0.87% Castro::construct_new_source() 50 0.02863 0.03106 0.0342 0.84% Castro::post_init() 1 0.03006 0.03114 0.03172 0.78% Gravity::interpolate_monopole_grav() 21 0.02732 0.02935 0.03075 0.75% Castro::finalize_do_advance() 10 0.0121 0.02176 0.02901 0.71% Castro::construct_new_gravity_source() 10 0.02231 0.02485 0.02794 0.68% Castro::post_timestep() 10 0.01531 0.01599 0.01643 0.40% VisMF::Write(FabArray) 2 0.01292 0.01348 0.01597 0.39% Castro::Castro() 1 0.01009 0.01133 0.01443 0.35% Castro::apply_source_to_state() 20 0.01128 0.01262 0.01366 0.33% FabArray::Saxpy() 20 0.01124 0.01257 0.0136 0.33% Castro::check_for_nan() 20 0.01006 0.01138 0.01225 0.30% MultiFab::contains_nan() 20 0.01004 0.01136 0.01223 0.30% FabArray::setDomainBndry() 41 0.006786 0.009684 0.01182 0.29% Castro::construct_old_source() 50 0.007886 0.009702 0.01052 0.26% Castro::construct_old_gravity_source() 10 0.007833 0.009627 0.01046 0.26% Castro::initMFs() 1 0.006351 0.007532 0.01026 0.25% Castro::computeNewDt() 9 0.009341 0.009351 0.009357 0.23% AmrLevel::AmrLevel(dm) 1 0.005238 0.006085 0.008022 0.20% StateData::define() 4 0.005221 0.006066 0.007996 0.20% Castro::enforce_min_density() 62 0.007193 0.007547 0.007882 0.19% Castro::swap_state_time_levels() 10 0.003114 0.004225 0.004982 0.12% Castro::finalize_advance() 10 0.002913 0.003423 0.00389 0.10% Castro::post_regrid() 1 0.001533 0.001942 0.002846 0.07% Castro::buildMetrics() 1 0.001582 0.001873 0.00253 0.06% Amr::InitAmr() 1 0.0002781 0.0003582 0.0005115 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.238e-05 0.0001844 0.0002709 0.01% DistributionMapping::LeastUsedCPUs() 1 6.462e-06 0.000178 0.0002625 0.01% Castro::enforce_consistent_e() 1 7.885e-05 9.907e-05 0.0001384 0.00% FabArrayBase::getCPC() 41 6.728e-05 7.767e-05 0.0001055 0.00% Amr::writeSmallPlotFile() 1 3.689e-05 4.756e-05 6.196e-05 0.00% Castro::enforce_speed_limit() 62 2.612e-05 2.849e-05 3.667e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.479e-05 2.77e-05 0.00% Amr::initSubcycle() 1 9.923e-06 1.206e-05 1.762e-05 0.00% Gravity::set_mass_offset() 10 8.364e-06 1.108e-05 1.421e-05 0.00% Gravity::swapTimeLevels() 10 7.405e-06 9.764e-06 1.385e-05 0.00% Castro::create_source_corrector() 10 7.406e-06 9.115e-06 1.116e-05 0.00% Castro::FluxRegCrseInit 10 6.594e-06 7.482e-06 8.88e-06 0.00% Castro::retry_advance_ctu() 10 6.666e-06 7.196e-06 7.616e-06 0.00% Castro::FluxRegFineAdd() 10 1.947e-06 2.247e-06 2.581e-06 0.00% DistributionMapping::Distribute() 1 8.89e-07 1.172e-06 1.761e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-11-ga9da2a54de5d) finalized