Initializing AMReX (23.11-13-gd93f34416da3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.11-13-gd93f34416da3) initialized Starting run at 06:33:45 UTC on 2023-11-17. Successfully read inputs file ... Castro git describe: 23.11-6-gb720d68fa AMReX git describe: 23.11-13-gd93f34416 Microphysics git describe: 23.11-8-gbbb78e68 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016282102 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35249921 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.376430515 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.323221447 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.322837363 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342655291 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334285552 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.306989716 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307691751 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30635025 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310045945 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009867213 seconds Ending run at 06:33:48 UTC on 2023-11-17. Run time = 3.552863531 Run time without initialization = 3.298545985 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.553 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2777 2.3331 2.3802 66.99% Gravity::make_radial_gravity() 21 0.3036 0.3095 0.323 9.09% Castro::estTimeStep() 21 0.04118 0.1133 0.1716 4.83% Castro::initData() 1 0.0472 0.09656 0.1683 4.74% check_for_negative_density() 10 0.02862 0.08051 0.1384 3.90% FabArray::ParallelCopy_finish() 41 0.03352 0.05801 0.09728 2.74% amrex::Copy() 193 0.06197 0.07643 0.09276 2.61% FabArray::setVal() 143 0.06141 0.07093 0.08438 2.37% Castro::reset_internal_energy(Fab) 1008 0.046 0.04817 0.05044 1.42% Castro::normalize_species() 62 0.04104 0.04217 0.04328 1.22% FabArray::ParallelCopy_nowait() 41 0.0351 0.04028 0.04186 1.18% FillPatchIterator::Initialize 41 0.02677 0.03185 0.0344 0.97% StateData::FillBoundary(geom) 41 0.0294 0.03179 0.03434 0.97% Gravity::interpolate_monopole_grav() 21 0.02703 0.0293 0.03027 0.85% Castro::construct_new_gravity_source() 10 0.02261 0.0253 0.02946 0.83% Castro::initialize_do_advance() 10 0.01164 0.01711 0.021 0.59% Castro::computeTemp() 63 0.01929 0.01996 0.02086 0.59% VisMF::Write(FabArray) 2 0.01192 0.01316 0.01798 0.51% Castro::initialize_advance() 10 0.004195 0.0102 0.01374 0.39% FabArray::Saxpy() 20 0.01095 0.01272 0.01357 0.38% Amr::writePlotFile() 2 0.006564 0.01101 0.01296 0.36% MultiFab::contains_nan() 20 0.01019 0.0111 0.01241 0.35% FabArray::setDomainBndry() 41 0.007821 0.009663 0.01181 0.33% Castro::initMFs() 1 0.006346 0.007395 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007175 0.009629 0.0104 0.29% Castro::enforce_min_density() 62 0.007191 0.007606 0.008136 0.23% StateData::define() 4 0.005255 0.006004 0.00806 0.23% Castro::construct_new_source() 50 0.005439 0.006128 0.006534 0.18% Castro::swap_state_time_levels() 10 0.002039 0.004266 0.006136 0.17% main() 1 0.003602 0.00447 0.004885 0.14% Gravity::get_new_grav_vector() 11 0.003032 0.003576 0.00412 0.12% Amr::coarseTimeStep() 10 0.001756 0.002924 0.003878 0.11% Castro::buildMetrics() 1 0.001492 0.001713 0.002304 0.06% Gravity::get_old_grav_vector() 10 0.001617 0.001923 0.002265 0.06% Castro::finalize_do_advance() 10 0.0004985 0.001108 0.001412 0.04% AmrLevel::FillPatch() 41 0.0006883 0.0008938 0.001141 0.03% Amr::InitAmr() 1 0.0002687 0.0003412 0.0004765 0.01% Amr::timeStep() 10 0.0001481 0.0002 0.0003612 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002665 0.0002857 0.0003134 0.01% DistributionMapping::LeastUsedCPUs() 1 6.865e-06 0.0001672 0.0002396 0.01% Castro::clean_state() 62 0.0001384 0.0001689 0.0002099 0.01% Castro::do_advance_ctu() 10 0.000112 0.000138 0.0001952 0.01% Castro::enforce_consistent_e() 1 7.745e-05 0.0001029 0.0001521 0.00% Castro::finalize_advance() 10 8.159e-05 9.829e-05 0.0001346 0.00% StateDataPhysBCFunct::() 41 8.781e-05 0.0001072 0.0001318 0.00% FillPatchIterator::FillFromLevel0() 41 9.16e-05 0.0001079 0.0001214 0.00% Castro::do_old_sources() 10 7.313e-05 8.571e-05 0.0001042 0.00% Amr::FinalizeInit() 1 4.51e-06 1.705e-05 9.493e-05 0.00% Castro::construct_old_source() 50 5.534e-05 6.994e-05 9.276e-05 0.00% FabArray::ParallelCopy() 41 7.148e-05 7.941e-05 8.904e-05 0.00% Castro::Castro() 1 6.481e-05 7.525e-05 8.74e-05 0.00% FillPatchSingleLevel 41 5.633e-05 6.534e-05 7.876e-05 0.00% Castro::do_new_sources() 10 5.281e-05 6.045e-05 7.182e-05 0.00% FabArrayBase::getCPC() 41 4.329e-05 4.886e-05 6.889e-05 0.00% Amr::writeSmallPlotFile() 1 3.163e-05 4.887e-05 6.66e-05 0.00% Castro::apply_source_to_state() 20 3.775e-05 4.711e-05 5.681e-05 0.00% Castro::subcycle_advance_ctu() 10 4.134e-05 4.608e-05 5.334e-05 0.00% Castro::advance() 10 3.183e-05 4.027e-05 4.931e-05 0.00% Amr::defBaseLevel() 1 2.825e-05 3.503e-05 4.209e-05 0.00% Castro::construct_old_gravity() 10 3.279e-05 3.589e-05 3.909e-05 0.00% Castro::construct_new_gravity() 10 2.733e-05 3.415e-05 3.652e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 2.69e-05 2.924e-05 0.00% FabArrayBase::CPC::define() 2 2.369e-05 2.591e-05 2.917e-05 0.00% Castro::expand_state() 10 2.04e-05 2.455e-05 2.787e-05 0.00% Castro::check_for_nan() 20 2.259e-05 2.417e-05 2.591e-05 0.00% Castro::post_timestep() 10 1.234e-05 1.639e-05 2.492e-05 0.00% Gravity::swapTimeLevels() 10 8.426e-06 1.135e-05 2.473e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.188e-05 1.661e-05 2.334e-05 0.00% Castro::post_init() 1 1.35e-05 1.624e-05 2.106e-05 0.00% Amr::initSubcycle() 1 9.642e-06 1.173e-05 1.744e-05 0.00% Gravity::set_mass_offset() 10 8.27e-06 1.024e-05 1.163e-05 0.00% Castro::computeNewDt() 9 7.468e-06 8.946e-06 1.051e-05 0.00% Castro::create_source_corrector() 10 6.798e-06 8.128e-06 9.486e-06 0.00% Castro::retry_advance_ctu() 10 6.362e-06 7.424e-06 9.349e-06 0.00% Castro::FluxRegCrseInit 10 5.997e-06 7.125e-06 8.754e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.852e-06 4.971e-06 7.407e-06 0.00% Castro::post_regrid() 1 2.346e-06 3.505e-06 7.033e-06 0.00% Castro::computeInitialDt() 2 3.383e-06 4.527e-06 5.397e-06 0.00% Amr::InitializeInit() 1 1.871e-06 2.547e-06 4.898e-06 0.00% Castro::FluxRegFineAdd() 10 2.14e-06 2.362e-06 2.611e-06 0.00% Amr::init() 1 1.915e-06 2.238e-06 2.533e-06 0.00% Amr::initialInit() 1 1.428e-06 1.946e-06 2.299e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.043e-06 1.339e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.552 3.553 100.00% Amr::coarseTimeStep() 10 3.284 3.284 3.284 92.43% Amr::timeStep() 10 3.269 3.27 3.271 92.07% Castro::advance() 10 3.253 3.254 3.255 91.60% Castro::subcycle_advance_ctu() 10 3.167 3.177 3.188 89.73% Castro::do_advance_ctu() 10 3.167 3.177 3.188 89.73% Castro::construct_ctu_hydro_source() 10 2.43 2.435 2.44 68.67% Gravity::make_radial_gravity() 21 0.3206 0.3259 0.3357 9.45% Amr::init() 1 0.2536 0.2538 0.2539 7.15% Amr::initialInit() 1 0.2364 0.2372 0.2378 6.69% Gravity::get_new_grav_vector() 11 0.2228 0.2272 0.2292 6.45% AmrLevel::FillPatch() 41 0.1845 0.2022 0.2215 6.24% FillPatchIterator::Initialize 41 0.1511 0.172 0.1976 5.56% Amr::InitializeInit() 1 0.06691 0.1186 0.1968 5.54% Amr::defBaseLevel() 1 0.06691 0.1186 0.1968 5.54% Castro::construct_new_gravity() 10 0.1876 0.1916 0.194 5.46% Castro::construct_old_gravity() 10 0.179 0.1832 0.19 5.35% Gravity::get_old_grav_vector() 10 0.1784 0.1825 0.1893 5.33% Castro::initialize_do_advance() 10 0.1591 0.1702 0.1801 5.07% Castro::initData() 1 0.051 0.1009 0.1741 4.90% Castro::estTimeStep() 21 0.04118 0.1133 0.1716 4.83% Amr::FinalizeInit() 1 0.04105 0.1186 0.1695 4.77% FillPatchIterator::FillFromLevel0() 41 0.1072 0.1305 0.1622 4.57% FillPatchSingleLevel 41 0.1071 0.1304 0.1621 4.56% check_for_negative_density() 10 0.02862 0.08051 0.1384 3.90% Castro::computeInitialDt() 2 0.003471 0.08176 0.1336 3.76% FabArray::ParallelCopy() 41 0.07438 0.09844 0.1326 3.73% Castro::expand_state() 10 0.1003 0.1157 0.1265 3.56% Castro::clean_state() 62 0.1132 0.1173 0.1217 3.43% FabArray::ParallelCopy_finish() 41 0.03352 0.05801 0.09728 2.74% Castro::do_old_sources() 10 0.08843 0.09168 0.09405 2.65% amrex::Copy() 193 0.06197 0.07643 0.09276 2.61% FabArray::setVal() 143 0.06141 0.07093 0.08438 2.37% Castro::initialize_advance() 10 0.06128 0.0727 0.08289 2.33% Castro::do_new_sources() 10 0.05936 0.06578 0.07571 2.13% Castro::computeTemp() 63 0.06556 0.06842 0.07158 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04627 0.04846 0.05072 1.43% Castro::reset_internal_energy(Fab) 1008 0.046 0.04817 0.05044 1.42% Castro::normalize_species() 62 0.04104 0.04217 0.04328 1.22% FabArray::ParallelCopy_nowait() 41 0.03519 0.04035 0.04194 1.18% Castro::post_init() 1 0.03609 0.03662 0.03718 1.05% Castro::construct_new_source() 50 0.0287 0.03143 0.03592 1.01% StateDataPhysBCFunct::() 41 0.02951 0.03189 0.03445 0.97% StateData::FillBoundary(geom) 41 0.0294 0.03179 0.03434 0.97% Gravity::interpolate_monopole_grav() 21 0.02703 0.0293 0.03027 0.85% Castro::finalize_do_advance() 10 0.01292 0.02332 0.03017 0.85% Castro::construct_new_gravity_source() 10 0.02261 0.0253 0.02946 0.83% Amr::writePlotFile() 2 0.02576 0.02653 0.02742 0.77% VisMF::Write(FabArray) 2 0.01192 0.01316 0.01798 0.51% Castro::post_timestep() 10 0.0155 0.01591 0.01627 0.46% Castro::Castro() 1 0.01036 0.01148 0.01456 0.41% Castro::apply_source_to_state() 20 0.01099 0.01277 0.01362 0.38% FabArray::Saxpy() 20 0.01095 0.01272 0.01357 0.38% Castro::check_for_nan() 20 0.01022 0.01112 0.01244 0.35% MultiFab::contains_nan() 20 0.01019 0.0111 0.01241 0.35% FabArray::setDomainBndry() 41 0.007821 0.009663 0.01181 0.33% Castro::construct_old_source() 50 0.007234 0.009698 0.01049 0.30% Castro::initMFs() 1 0.006346 0.007395 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007175 0.009629 0.0104 0.29% Castro::computeNewDt() 9 0.009331 0.00934 0.009346 0.26% Castro::enforce_min_density() 62 0.007191 0.007606 0.008136 0.23% AmrLevel::AmrLevel(dm) 1 0.005269 0.00602 0.008081 0.23% StateData::define() 4 0.005255 0.006004 0.00806 0.23% Castro::swap_state_time_levels() 10 0.002039 0.004266 0.006136 0.17% Castro::finalize_advance() 10 0.002987 0.003851 0.00465 0.13% Castro::post_regrid() 1 0.00154 0.001949 0.002839 0.08% Castro::buildMetrics() 1 0.001621 0.001861 0.002525 0.07% Amr::InitAmr() 1 0.0002793 0.000353 0.0004939 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.227e-05 0.0001732 0.0002472 0.01% DistributionMapping::LeastUsedCPUs() 1 6.865e-06 0.0001672 0.0002396 0.01% Castro::enforce_consistent_e() 1 7.745e-05 0.0001029 0.0001521 0.00% FabArrayBase::getCPC() 41 6.812e-05 7.477e-05 9.442e-05 0.00% Amr::writeSmallPlotFile() 1 3.163e-05 4.887e-05 6.66e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 2.69e-05 2.924e-05 0.00% FabArrayBase::CPC::define() 2 2.369e-05 2.591e-05 2.917e-05 0.00% Gravity::swapTimeLevels() 10 8.426e-06 1.135e-05 2.473e-05 0.00% Amr::initSubcycle() 1 9.642e-06 1.173e-05 1.744e-05 0.00% Gravity::set_mass_offset() 10 8.27e-06 1.024e-05 1.163e-05 0.00% Castro::create_source_corrector() 10 6.798e-06 8.128e-06 9.486e-06 0.00% Castro::retry_advance_ctu() 10 6.362e-06 7.424e-06 9.349e-06 0.00% Castro::FluxRegCrseInit 10 5.997e-06 7.125e-06 8.754e-06 0.00% Castro::FluxRegFineAdd() 10 2.14e-06 2.362e-06 2.611e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.043e-06 1.339e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.11-13-gd93f34416da3) finalized